G61564 (msi1,LOC102299939,LOC108239862,LOC107687968,LOC107550984,LOC107712472)


Basic Information

Item Value
gene id G61564
gene name msi1,LOC102299939,LOC108239862,LOC107687968,LOC107550984,LOC107712472
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14411397 ~ 14418905 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU82488
CCTGGCTGAGCCTGTGGGGGACATCACCTCCTTGGGCTGAGCTTTCTTACACTCCACCATTTTGTTGTTGATCTCGTGGAAGTGGATCTCGCAGACTTTCTCCACCACGTCCTCGTTCTCAAACGTCACAAAGCCAAACCCTCTGTGTCTGTTGGTGGTCTTGTCGAACATGAGCATGGCATCGTCGACCTTCCCAAACTGGTCGAAGTACTGTTTCACGTCCTCGAtggttgtgttcactgacaggCCTCCCACAAAGATCTTCTTGGTTCGTGTCACTAACTTGGGCTGAGCTCTGCGAGGGAATGCAACCTTTGGGTCGATCTGTGGGAGAGAatacagaaaaagagagggcTGGTTAGTGTTGTGTCATGATACAGATGAACCAGCAACCTGTCGCCCTTTACCCTGGTGCTTTCTGAC

Function

symbol description
msi1 Enables identical protein binding activity. Predicted to be involved in nervous system development. Predicted to be located in nucleus. Predicted to be part of polysome. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: RNA-binding protein Musashi homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82488 True 423 lncRNA 0.51 5 14411397 14418905

Neighbor

gene id symbol gene type direction distance location
hnf1a hnf1a coding downstream 11430 14392607 ~ 14399967 (-)
pop5 pop5 coding downstream 34540 14374656 ~ 14376857 (-)
rnf10 rnf10,LOC102784202 coding downstream 37164 14365222 ~ 14374233 (-)
LOC120561371 crybb3,LOC103469711,LOC102784487 coding downstream 83885 14324930 ~ 14327512 (-)
crybb2 crybb2,LOC108234953,LOC100703162 coding downstream 91879 14317597 ~ 14319518 (-)
LOC120561207 NA coding upstream 26558 14445463 ~ 14448015 (-)
asgrl1 NA coding upstream 35183 14454088 ~ 14456312 (-)
LOC120559985 nacc2,LOC102304562,LOC102778489,LOC103397964,LOC101483941 coding upstream 96894 14515799 ~ 14532759 (-)
qsox2 qsox2,LOC102781541 coding upstream 116363 14535268 ~ 14547863 (-)
ddx31 ddx31,LOC102778005 coding upstream 147126 14566031 ~ 14580163 (-)
G61559 NA non-coding downstream 23658 14387523 ~ 14387739 (-)
G61425 NA non-coding downstream 97465 14313595 ~ 14313932 (-)
G61423 NA non-coding downstream 125510 14284175 ~ 14285887 (-)
G61422 NA non-coding downstream 129049 14281851 ~ 14282348 (-)
LOC120560401 atp5ib,atp5i,LOC106580450 non-coding downstream 156894 14252253 ~ 14254503 (-)
LOC120561033 NA non-coding upstream 42021 14460926 ~ 14466354 (-)
G61586 NA non-coding upstream 66337 14485242 ~ 14485537 (-)
LOC120560922 NA non-coding upstream 135298 14554203 ~ 14556499 (-)
LOC120560921 NA non-coding upstream 140181 14559086 ~ 14559729 (-)
G61601 NA non-coding upstream 210706 14629611 ~ 14630973 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other downstream 47071 14328151 ~ 14364326 (-)
G61264 NA other downstream 822065 13589039 ~ 13589332 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other downstream 1856112 12293707 ~ 12555285 (-)
LOC120561001 whrn,LOC102797690 other downstream 2349751 11901650 ~ 12061646 (-)
abca2 abca2 other downstream 2817737 11285385 ~ 11593660 (-)
trnaa-agc_14 NA other upstream 520070 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 525591 14944496 ~ 14944568 (-)
trnae-cuc_15 NA other upstream 529854 14948759 ~ 14948830 (-)
trnas-gcu NA other upstream 532597 14951502 ~ 14951583 (-)
trnas-gcu_1 NA other upstream 548774 14967679 ~ 14967760 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location