LOC120561033


Basic Information

Item Value
gene id LOC120561033
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14460926 ~ 14466354 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU82509
AtacagtcagagagagagacggacttTGTGAGGTTTAGTAGGTTGTAGAAGGACATTGTTATCCATTACTGAGGCTGACAACCAGTTCTGCTGTGTTTTGGCGTATTGGAATCGACAAGAGACGGACATCTGTGAGTGTAAAAGAGAGAGGATCGGGGAAACTCCTTTGGACCACACAGAGAGCGATCTTCCATCCTGCTGGTGTGATGTAGACTGTCGCTGCTGGTTTCTGTTCTGCTGATCTTCCTGCTGTGGTTTACCCGGTGCTCTGCCTGCTGCCATCGCCAAGTTGGCCTTTTTCATATATCCCCTTGGCTGGGATTCTGACTCCCCTCATCCGCTCCATCTACAACTTCCTGTAAGGGAGATCACATTCTCCGAAACAGTGCTGATCCAGTTCAACTTTTCCCGGGGAGGCTGCGGggtcatccattgttttgaaagGTGTCACTTGACTGTCAGCTCTCCATCGCAGCCCTGCATGGCAGTCAATAAAAGAACCTCCTGAACCATTCCTGCTTAACTCACCTCCACTGGACCTTGCACATTTGTTTCCATCTCTACATCAAACATATTGAACGATACTCTAAAATGTATATAGAAATTGCTTACTTACTTTTCCTGGCACATTTAACTTGTACGTAATACATCTTCATACACTGGAGTATCTCATGAGTACAGATGCCCATCAATACGCTGTTGCAGGAGAGGTAAATGACACCAAGATATGGcagttgaataaaaacaaatgtagagTATGTGATAACAGGACATGCAAGTCATCAATTATCAACAGTGTTATTTTTGTGGTGGTTAAGTATAGATTGATCACACAAGTAAGGTTAACTAGCAAGTTGTTCGTTAAGGGCTGATGGCTGGTTAACATTACGGACAAAACCTATTTGTTCCTCGTATTCTCTTGTGTGTATCACGTATccgtctcctctagctgttgtGGTTGATATGACATAGGTCCCCTAGCTTTGACCAGACACAAAAATGGTGACAGCAAAGCAATGTGATGTAACGTGGTCCTTATAAATATATACCAGAAACTATGCACAAAGGACT
>XR_005639560.1
ATGCAGAGATTCCCGTTTTGAGAGAtacagtcagagagagagacggacttTGTGAGGTTTAGTAGGTTGTAGAAGGACATTGTTATCCATTACTGAGGCTGACAACCAGTTCTGCTGTGTTTTGGCGTATTGGAATCGACAAGAGGAGACGGACATCTGTGAGTGTAAAAGAGAGAGGATCGGGGAAACTCCTTTGGACCACACAGAGAGCGATCTTCCATCCTGCTGGTGTGATGTAGACTGTCGCTGCTGGTTTCTGTTCTGCTGATCTTCCTGCTGTGGTTTACCCGGTGCTCTGCCTGCTGCCATCGCCAAGTTGGCCTTTTTCATATATCCCCTTGGCTGGGATTCTGACTCCCCTCATCCGCTCCATCTACAACTTCCTGTAAGGGAGATCACATTCTCCGAAACAGTGCTGATCCAGTTCAACTTTTCCCGGGGAGGCTGCGGggtcatccattgttttgaaagGTGTCACTTGACTGTCAGCTCTCCATCGCAGCCCTGCATGGCAGTCAATAAAAGAACCTCCTGAACCATTCCTGCTTAACTCACCTCCACTGGACCTTGCACATTTGTTTCCATCTCTACATCAAACATATTGAACGATACTCTAAAATGTATATAGAAATTGCTTACTTACTTTTCCTGGCACATTTAACTTGTACGTAATACATCTTCATACACTGGAGTATCTCATGAGTACAGATGCCCATCAATACGCTGTTGCAGGAGAGGTAAATGACACCAAGATATGGcagttgaataaaaacaaatgtagagTATGTGATAACAGGACATGCAAGTCATCAATTATCAACAGTGTTATTTTTGTGGTGGTTAAGTATAGATTGATCACACAAGTAAGGTTAACTAGCAAGTTGTTCGTTAAGGGCTGATGGCTGGTTAACATTACGGACAAAACCTATTTGTTCCTCGTATTCTCTTGTGTGTATCACGTATccgtctcctctagctgttgtGGTTGATATGACATAGGTCCCCTAGCTTTGACCAGACACAAAAATGGTGACAGCAAAGCAATGTGATGTAACGTGGTCCTTATAAATATATACCAGAAACTATGCACAAAGGACTACTTGCACCCTAGTGCTGCTGAATTTTTGatgttatttaataaatgtcatgttttatatctgtca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82509 False 1071 lncRNA 0.44 3 14460991 14466330
XR_005639560.1 True 1163 lncRNA 0.43 3 14460926 14466354

Neighbor

gene id symbol gene type direction distance location
asgrl1 NA coding downstream 4614 14454088 ~ 14456312 (-)
LOC120561207 NA coding downstream 12911 14445463 ~ 14448015 (-)
hnf1a hnf1a coding downstream 60959 14392607 ~ 14399967 (-)
pop5 pop5 coding downstream 84069 14374656 ~ 14376857 (-)
rnf10 rnf10,LOC102784202 coding downstream 86693 14365222 ~ 14374233 (-)
LOC120559985 nacc2,LOC102304562,LOC102778489,LOC103397964,LOC101483941 coding upstream 49445 14515799 ~ 14532759 (-)
qsox2 qsox2,LOC102781541 coding upstream 68914 14535268 ~ 14547863 (-)
ddx31 ddx31,LOC102778005 coding upstream 99677 14566031 ~ 14580163 (-)
ak8 NA coding upstream 115730 14582084 ~ 14599142 (-)
tsc1a tsc1 coding upstream 133907 14600261 ~ 14625197 (-)
G61566 NA non-coding downstream 37115 14417175 ~ 14423811 (-)
G61564 msi1,LOC102299939,LOC108239862,LOC107687968,LOC107550984,LOC107712472 non-coding downstream 42021 14411397 ~ 14418905 (-)
G61559 NA non-coding downstream 73187 14387523 ~ 14387739 (-)
G61425 NA non-coding downstream 146994 14313595 ~ 14313932 (-)
G61423 NA non-coding downstream 175039 14284175 ~ 14285887 (-)
G61586 NA non-coding upstream 18888 14485242 ~ 14485537 (-)
LOC120560922 NA non-coding upstream 87849 14554203 ~ 14556499 (-)
LOC120560921 NA non-coding upstream 92732 14559086 ~ 14559729 (-)
G61601 NA non-coding upstream 163257 14629611 ~ 14630973 (-)
G61647 NA non-coding upstream 332566 14798920 ~ 14799149 (-)
si:ch73-138n13.1 LOC102794857,LOC107084631 other downstream 96600 14328151 ~ 14364326 (-)
G61264 NA other downstream 871594 13589039 ~ 13589332 (-)
LOC120561038 LOC102778062,LOC101486272,LOC102199534,LOC108245630 other downstream 1905641 12293707 ~ 12555285 (-)
LOC120561001 whrn,LOC102797690 other downstream 2399280 11901650 ~ 12061646 (-)
abca2 abca2 other downstream 2867266 11285385 ~ 11593660 (-)
trnaa-agc_14 NA other upstream 472621 14938975 ~ 14939047 (-)
trnaa-agc_15 NA other upstream 478142 14944496 ~ 14944568 (-)
trnae-cuc_15 NA other upstream 482405 14948759 ~ 14948830 (-)
trnas-gcu NA other upstream 485148 14951502 ~ 14951583 (-)
trnas-gcu_1 NA other upstream 501325 14967679 ~ 14967760 (-)

Expression


Co-expression Network