nudt18 (nudt18,LOC104957221)


Basic Information

Item Value
gene id nudt18
gene name nudt18,LOC104957221
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15219137 ~ 15224015 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU82731
tTAAACAATATTGGCCCATTCTCAATCACTCAGAATAAAAGCCAATAGGTGCTCTACAGATTTACAGATACATATAAGTTAAAATaatcaatacatttaaataggcaaatatgtttaatgtatttctttaactgtctttaaaattaaaattagctTATCTTTGTTTAACCACAAACAAAACAGGTTGAAGGTATTTTAATATGACCAGAGGCTGCTGTTGATGTGGAGAGAGAACAAGCTGCAGGTGGGAATCCATTGACAGgtggttttattgttttcagAGATGAGGGAGAGGCACATCACACTCATGTTTGTTAAGGCGAAGTACCGCAGTGGATGGATATCTGTCTTCCACAAGCAGCCAGAACCTGTCTTGTTTTTATCTGCCAAGCAAACTTTGGCAGTAAGTTGTACATTAGCCAATtaaaaggaaggaggaggagatttttatttttgatgttatattttattgttatgGCTGATACCGTGGCAGGATcagcaaagagaaaaaagaaaagaatgctccgcataataaaaaaaaaaaagctgaaaggGACAGGGACAGAACACCATCGAAAACAATAGTCAATCTTCGGTCGGCCATTCAACAGATGCATAGAATTCATTTCAGGTATGTAAAAggtattttatttatgaaataCATTGTAAGACGTTATTTACAACAATATATGAATTTACATTGGTGGCTAAATCAAATTCACCATCATCATATTACAATTATTAATCTTACAGAGCCACAAATTAGATACATTACTTAAACGCTATGCATCCAGCAAAcatctctttaaaaaaagaaaaattgtatTTATGGTTGCGTCTTTCTTTCACTCACTTCcattattgggactttagcttattcactgtaacccccag
>XM_039803124.1
gtccAGAACCCATATTCAACatcgcctttattttgaaattcccgAACCTGAAGATTTTTATTTCCAGGTCAGCTTGAAGGTGTCAAATGTCaaaacagagcagcagcagccagcacAGTGGAAATGGAAACTTAACACGGTCGTTAATTACACACGACATGGAGGTGACGGAGAAGGGGTGGCAGCAGGTGGAGGAGCAGGTGGAGAGGCTGCTAAGTGGTCAGGGGTCAGAGGTAACCGCCTGTGACGTGGGCCTGGAGCAGAGCAAACCGGCGACTCTGAGGAAGACCGTCACCTACATTGTCTGCGCTGTCATCTTCAATGAGAAGGAGGAGGTGCTGATGGTGCAGGAGGCAAAGCCGGACTGTTATAAGCAGTGGTACCTGCCTGCCGGGAGGGTGGAGGTGGGGGAGAGCCTGGAGGAGGCGCTGAGGAGGgagGTGAAGGAGGAGGCGGGGTTTGACTGTGAGCCAATCACCTTGCTACTGATCCAGGAGCAGGGACCGCAGTGGATCCGCTTTAACTTCCTTGCTAAAgtcacaggtcagaggtcacacagaGCCTACACGCACGTTTGTACTTCTGTTCTTATGAGGACCCTCATGAACATAATTAACCAAACTGAGCATGACACTGTCGGATATCCCTCTGAAACATCTGGGGATGAGAGAGAACAAGAGGGTTTCACTAAATCTCTGACTGTTCTTACCAAACccacacatttttatatattgaaTACTGACCCTGACTCTGGCTGCTGTGATGCTTTCAGGTACCGTCAGGATCCCTGCCATCCTGTCACGTTACCTGTAGACCTGAGCTGCCGTCACGTGGTGCAGAGACTTGTCCTGGTCTTCACCAACGCTAAGGAACAGATCTGGGTCCTGCTTATCAAAGCCCCGGTGCTCCACCTTCCCACGGCGGCGGCGGTAAAGACTCACGCGGTGACGTGGGCGGCCAACATGGTGGTGCAGGAAGCCATGCCGTCAGCATATTATGACCAAGACGTCAACACGCTGGGCGTCTTCAGCCTGCAGCACAACGGGCGTCAGCATGGGAAGACAGACGGCGTGTGCTTCAACACGCTGGTGGCGCTGGTCCCTGACCACGTCCAACGCAATGAGGACGGAGAAAAGGTAGAGTGGACGGGGACGGGACAGCCTCCACCTGTAGAAAACCCTCGATACGTCTGGCACGAAGTCCAGAAACAAACACTGAAAGAGAAACTGCTGGAGAAGACCAAAAACACCTCCATTTTACCTATGCACAGCCTGTACTGACCACATTATATCACTGTATCATTCCCCAAGAGGACTCTTATTGTGTTAAGAACACTGTTGGCTTTTCTTAAAGgagattttattctgaaagtaAATGTCTTATTTAATTTATCAGTTGGATTGAAGAGTTTTAATGTCAACAGAACAATAAAATACTTATGTTATATCTGATTGATTCCATAAGAAAGATTCTAAACTttctttagagtgaaaaaaaacgCTTTAAATTAATACGCTTTAAATTAATACGCTTTAAATTAATACttcaatattttgggaaatacacttattctttttgtttcatatattatatacccAACCCCCAATATAACATGCATATATTAAACAGATGCTTATCGGTTTTAACAGTTTTAGAtgcaatattatattatatatggtTAAACAATATTGGCCCATTCTCAATCACTCAGAATAAAAGCCAATAGGTGCTCTACAGATTTACAGATACATATAAGTTAAAATaatcaatacatttaaataggcaaatatgtttaatgtatttctttaactgtctttaaaattaaaattagctTATCTTTGTTTAACCACAAACAAAACAGGTTGAAGGTATTTTAATATGACCAGAGGCTGCTGTTGATGTGGAGAGAGAACAAGCTGCAGGTGGGAATCCATTGACAGgtggttttattgttttcagAGATGAGGGAGAGGCACATCACACTCATGTTTGTTAAGGCGAAGTACCGCAGTGGATGGATATCTGTCTTCCACAAGCAGCCAGAACCTGTCTTGTTTTTATCTGCCAAGCAAACTTTGGCAGTAAGTTGTACATTAGCCAATtaaaaggaaggaggaggagatttttatttttgatgttatattttattgttatgGCTGATACCGTGGCAGGATcagcaaagagaaaaaagaaaagaatgctccgcataataaaaaaaaaaaa

Function

symbol description
nudt18 Predicted to enable magnesium ion binding activity and nucleoside-diphosphatase activity. Predicted to be involved in GDP catabolic process; dADP catabolic process; and dGDP catabolic process. Predicted to act upstream of or within nucleotide metabolic process. Orthologous to human NUDT18 (nudix hydrolase 18).

NR:

description
8-oxo-dGDP phosphatase NUDT18 isoform X1

GO: NA

KEGG:

id description
K17817 NUDT18, MTH3; 8-oxo-dGDP phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
TU82731 False 894 lncRNA 0.34 1 15223122 15224015
XM_039803124.1 True 2223 mRNA 0.44 6 15219137 15223666

Neighbor

gene id symbol gene type direction distance location
LOC120560530 NA coding upstream 237520 14979874 ~ 14981617 (+)
c5 NA coding upstream 294200 14891572 ~ 14924937 (+)
prdm12b LOC102306279,LOC102776562,LOC102208027,LOC101478941 coding upstream 332683 14878628 ~ 14886454 (+)
LOC120560087 LOC103371518 coding upstream 351482 14842071 ~ 14867655 (+)
kazald3 kazald1,LOC107097908 coding upstream 446985 14767716 ~ 14772152 (+)
lrrc2 LOC102210414 coding downstream 18835 15242850 ~ 15252339 (+)
mak16 mak16 coding downstream 74385 15298400 ~ 15306100 (+)
LOC120561495 NA coding downstream 74527 15298542 ~ 15298643 (+)
LOC120560841 ppp2cb,LOC100710281,LOC105920955,LOC101157601,LOC103131405 coding downstream 192441 15416456 ~ 15430582 (+)
LOC120560844 LOC104935222,LOC101481450,LOC102294942,LOC106534038,LOC108245882,LOC100710015,LOC107386134 coding downstream 211726 15435741 ~ 15467408 (+)
G61730 LOC102301232,LOC102776762,LOC101476977 non-coding upstream 66586 15146100 ~ 15152551 (+)
G61540 NA non-coding upstream 191319 15027605 ~ 15027818 (+)
G61539 NA non-coding upstream 191737 15026441 ~ 15027400 (+)
G61513 NA non-coding upstream 541765 14676137 ~ 14677372 (+)
G61468 NA non-coding upstream 719703 14499180 ~ 14499434 (+)
G61756 NA non-coding downstream 99 15224114 ~ 15224465 (+)
G61754 NA non-coding downstream 532 15224547 ~ 15224969 (+)
G61757 NA non-coding downstream 16401 15240416 ~ 15241442 (+)
G61770 LOC103398011,LOC102234551,LOC103373450,LOC107386141,LOC106527788 non-coding downstream 82432 15306447 ~ 15314578 (+)
G61782 LOC106527778 non-coding downstream 150762 15374777 ~ 15376002 (+)
G61535 LOC103368073 other upstream 135689 15078874 ~ 15083448 (+)
cntrl NA other upstream 239340 14928373 ~ 14979797 (+)
surf4l surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other upstream 423194 14774513 ~ 14795943 (+)
G61514 surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other upstream 424535 14699525 ~ 14794602 (+)
LOC120561401 NA other upstream 456588 14755450 ~ 14762549 (+)
spinb spin1,LOC103373448,LOC108245887,LOC101477468,LOC100698355,LOC106527790 other downstream 25729 15249744 ~ 15352625 (+)
zgc:101664 NA other downstream 207693 15431708 ~ 15434935 (+)
LOC120560526 NA other downstream 294765 15518780 ~ 15532796 (+)
mctp1a mctp1,LOC102782783 other downstream 412783 15636798 ~ 15777141 (+)
fam172a fam172a,LOC102785942 other downstream 719683 15943698 ~ 16099484 (+)

Expression


Co-expression Network