spinb (spin1,LOC103373448,LOC108245887,LOC101477468,LOC100698355,LOC106527790)


Basic Information

Item Value
gene id spinb
gene name spin1,LOC103373448,LOC108245887,LOC101477468,LOC100698355,LOC106527790
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15249744 ~ 15352625 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU82736
ACAATACTGTTTATTGTAATCATAAGAAAACCACTTATGACAGAGGAAACCTCTACAGTTCCAACATTCAGAGAGCAGACActgttgtttctttgtttcaGGTAGAAATGTTTGTTTGATCTGCTAGCTAGCTCTGCCTTGGTTCCCTCCTCGCTTTCTTCTATCTAATCTTTACTCCGGTCACCTAGGAAACGTCCAGAAGTTGTTGGACTGTTTGTCTTTCAGTCCCATTCAGAGAAAGCAGCCGGTGTCCGCTGATTTAGTCTCTGCTGCCGTTTAAACCGCCAAAGTTAACCTGgatacccacaatgcacctggCTTCAGTGGATGTTTAGACCGTAGTCAGGCTCCTGGGCGATGGATGGGGGGGTGGAGACCAGTGTCTGCGTGGATCTTCACCCTTCATGATGTGGACATCAGTAGTCGTCTGTTCCGGAGGCGACACCCTGTTCGTATTTTACAGAAAAACATTGATCTATTGTGtgcgtgtgtgtgtgcgtgcgtgcgtgcgtgc
>XM_039803705.1
CTTAGCGCAGCTAGCTTGTCGCAGCGAAGAACCAAACGGAGGCAGAGCGGATCAATTTGGAGCCACGGCGGTTGATCGGGATTATGCGGCGACACTGATTGCTGTATCGGCTGAACACACTGTTTCCTCATCGCGTCCATCAGCTGTGACGTCGCCTGAGTCTCCAGGGTTTAGTCTCTACCCAGCCTGTATGCAGCCTGTCCAGGGCCCAGCCTAATTCCTGGTGCTCCTTACTTTtccaccacctcctccctcctttccctaccctcctcccccctctgccCCCTCCCTCCATTTTcacccccacacccacacacacgcgcacgcacacacacacacacacacacccacacgcgcacacacatacacacacacacaaacagccccCGGCCTGGTGTCACGCAGACTGACTACCAGCATTTAACCCCGGACCGGCGGCCTGGCTGGCTGCCCCCCTACAGGTGGATGAATGAAGACCCCATTCAAGAGCCCAGCGCCCCACGGCCCCCCCGACCAGACGGGGgaCATTCAGGTGTGTCTGCAAAcatgatgaagaagaaaaactcaCACAAGAAACAGAGGACCAGTGTTGGTCCCAGTAAGACTCTGGCTCAGCCCAGAAGGAATATTGTGGGCTGCAGGATCCAGCACATCTGGAAGGAGGGCAGTAAGTCGTCTCAGTGGAAGGGGACGGTCCTGGACCAGGTCCCTGTGAACCCATCCCTCTACCTGATCAAATACGACGGCTTCGACTGCATCTACGGCCTGGAGCTGCACAGTGATGAGAGGGTGGTGGAGCTGGAGGTCCTTCCTGACAGAGTGGCTCCGGCCCGTGTCAGCGACTCGATGCTGGCTGAAACAATGATCGGTAAAGCGGTGGAGCACATGTTCGAGACGGAGGACGGGCCGAAGGAGGAGTGGAGGGGGATGGTGCTGGCTCGAGCTCCCATCATGACCGCCTGGTTCTACATCACCTACGAGAAAGACCCGGTCCTCTACATGTACCAGCTGCTGGACGACTACAAGGAGGGAGACCTGCGCATCATGCCCGACTCCAACGACAGCGTGGCGGCGGAGCGGGAACCCGGCGAGGTGGTCGACAGTCTGGTGGGCAAACAGGTGGAGTACGCCAAAGAGGACGGCGGGAAGCGGTCGGGTATGGTCATCCACCAGGTGGAGGCCAAGCCCTCCGTCTACTTCATCAAGTTCGACGACGACTTTCACATCTACGTCTACGACCTGGTCAAGACCTCCTAAGACCAGAACGCCGGTCCAGGACCCCCAAAAAGACTTATTGAGACCTGCCTAGACCCACCGAAATAACCCTACCGAAATCCCCCAGTGAAGGAAAACTACGGCTAGGGTTTTAAACATCCACGATCTATAGAGACGCCTGAGACAAACAATATCATTCTTTACTCTTTCGCCTTAAACACAAGAAAACAAATGCGGTTATGGAAGCCCAGCCCCTTGCCAAGACAGACAAAACTACAACCAGCTCCAAGTCTTCAGGTGTATCCAGTCATCTTATAATCCATCATTATTGTCCAGATTTCTTTTGACTCTGTTTGGATGCTTCCTTCGACACAAAACTGGTTTGTGGGCCCCAAAGAAGACCAGGGATCCTGTGTTATATGGAATAACTTAAACCTGTATTGTTAAATACTATTTTGGAACATTTGTGGCGGTAATACACAAAAACTTGGCTAAAATCGAAGAAGCGGAGACCGGATCCTGAGATCCtccagacaaaacaaaaacgttTTCTGACCCAAATATCATTTGTTCCAGAGTCAAAGCAGGTCTGAAACTATTAAGGTAAACAGAAAGACCTCATCCCCCCCTTTCCTGAAACCCTGTCAGACCGCTTAAGCTCTCCGTCGTCAGAGGAAGGGGGACAGACAGGTCTGAGTCTGCCGGGGTTAATGAAGGGATGGGACTTTAGGAAGACAGAAACCTGTTGATGAAGTGAAAGCTGACCCATCGTCTGTCTCCATCTGTATTTATAGAAAGTGTAGGTGGACTATTGTGCTATTAGAGGTCCAAATACAGAGGATTTTACTTAACCTGCCTACCTGCAGGTCACCTGTTCACAAACAAAGACGCTGAGTGGAATAAAGTGTGAAGGAAGCTGTGGAAAAACCAgaggatacagagacagactgttttctttttacattcttttagcatttggctttttttttttttttcctgatgcTGCTGATTCCTACATTACCCATAATGACTTGCATCAGACAGTGGGAGAGGCTCAGGTGTGTTTGTTTGGCTGCATCAGTTGGTCCAAAGTGGCCTGTTAGCATTGTTGGCTGTCCTCATAAACTGCTCGTGGTCGCCGCCCAGATTCAGTTTTCAGTAGGAATGCTAATGATGCTAACGAGCTACTTCCCAAGTGGTCTAGAACCTCGATAAGCAGGATGATGATTAACTATTGTTCGCACAAACTTTTCATGGATTCTGGTCCAGATGAGAACTAGTTCAGGTCAAAGAAACACTCTTGTTGGTCCTAGATTATTTAACATTTATAATCAGTATAGAACCATTACTTAATGGTTTATAACAAACTAGGATGTAGTTGTAAGTAGATATGGGTTTATTAATGTTAAGTATTTGTCAACAATTTTAACTTCTACTATGAAGACAATAATTCTACGAGTTATAGTTTTTAAgtaatacattaataaacactCACATGGTGTGTTATAAACCTTTATTACATGTTTATTACTGCTTATAAATGTTAAATAAGGTGTTGAGTTTAttttggagcaaagacaaaaTGTCTGAATGTTCCTTTAATGGCTTCCCTGGGACAGCTGATGCAGGATTGATCAGTTTAATAAAAGCCAAAATGCCGGCACAACTGACAAATCACTGAACCTGAAGGTAAAACTGTAGCAGTCGTGATGCCCCGCCCCCTGTCTGAGGCGCACttttctgattggttggactCAAGCACAGCTGTGGTTTGTTACGGTCCAAAccagtcatccagtgttcatCTGTTGGAAGTTgatttatatgtttttataaaagaaaatctTTTCCCTTCTTATCTCTTCTTCTGCTTTCCCATCAACGCCCTGTATAGTTACTTCTTTGTTTATATGAGCCGGCACATTCAGATCgccttgttttctttgtatATTATCTCTTTGTTGGTTTTATGTCACATCTCTTCTGAtctgtgtatactgtatatgaccCAGTTAGCTGTAGGCTTATGGCTGAAATTCACATTTCATCCAAAATGACTGAAGATTTTATCCAAACTGCACTCCACAGATCTGTTGGTGTGTAGGATTATTTTGTCTAACTGTTTGCTGACTGACAAATCTCTCCTTCCCTGAATGGAGTCTGGGTTGGGGCGCTCTTCCCTTGCAATCACTTCCTAGCTCCCTATAAACCACTCTTTTAACAGTTAGACCTCAGTCAGGGGTTGATGGAGGATACTCGATCTCCCACAATGCTGTGCTCTTACCTGATGTAGCTTCACCCACCACAGACATAACTTTAACATTAGCATAAACAGCCATGTTGCCTGATCCACGTCCCGTGTGCCTGAAGGGActcaaacatctgaaattcctttttttttttttttctttctttgtttttttttttaaaagagcgTAAATGTTTCCAAACCagtgctttttctttttggatGCCAACTGTTTTAAATCTAGGACACTCCTGGTTCAAGTCTATGATGTGGGTTCCACAACATTTCGTTCAGTTATGAATATGATGTGTTCTGATTCTAGAATTGAAAGCACCTGCATTATTGTTTTAGAATATGTTGTTTGATATTGTGGAACGTATTCCATCAACCTGCCAATTCTAGTTctagaacatgcaaactccggAATATGAAAGTTCATTCTGTGGAGTTTTTAATAACACAAAATTCTCACAGTGTAACCCACACATACTAAATTATCAGTGTCAGGCTGTGGTGTTCCAGAAACTTTTCTTCAAtttttttggaaaactttgATTTTGTGGAATGTGTCCCATCACAATGTGTGCAACATGTATAGAACCCTCCCAttctgacaaaaaaatgttgaaggaAGCACATGTTCGATTCATTAGATTTCCTAGAAcgcatcccaaaaaaaaaatcgtgtGAGCCATTTTTATACAAACACATGTTGAAGGGTGAACGCATTTGCTTTCAGCTTCAGATTCTAGAGAGACTGAGACTGGTTTTGTAATCTGGTTTGGATATGTGCATTCTCAAGTCTGGGGTCCGGGATTCTAGAATAATTTGACCACATTCCTTTTagaatctttatttttttgtgttgatttCCCTAAAAAACACAGCTACAAATTCTCGAACACTGAGACCAGAAACCCACGCGTTGTGATTCAGGAACACGTCTGGTTTCTCAATTGAAAATCTATTCAAAACATCTGCAGACGGAGAGGACAAAAAAGGGCAAACGTGATTTATTAACTACATAAAGATGTTGGCGTTAAGATGTCAAAACCGTAAACCACAATTAATAGTATTGTAATCATAAGAAAACCACTTATGACAGAGGAAACCTCTACAGTTCCAACATTCAGAGAGCAGACActgttgtttctttgtttcaGGTAGAAATGTTTGTTTGATCTGCTAGCTAGCTCTGCCTTGGTTCCCTCCTCGCTTTCTTCTATCTAATCTTTACTCCGGTCACCTAGGAAACGTCCAGAAGTTGTTGGACTGTTTGTCTTTCAGTCCCATTCAGAGAAAGCAGCCGGTGTCCGCTGATTTAGTCTCTGCTGCCGTTTAAACCGCCAAAGTTAACCTGgatacccacaatgcacctggCTTCAGTGGATGTTTAGACCGTAGTCAGGCTCCTGGGCGATGGATGGGGGGGTGGAGACCAGTGTCTGCGTGGATCTTCACCCTTCATGATGTGGACATCAGTAGTCGTCTGTTCCGGAGGCGACACCCTGTTCGTATTTTACAGAAAAACATTGATCTATTGTGTGCgcgtgagtgcgtgtgtgtgtgcgtgcgtgcgtgcgtgtgagaaTGAGTGTATGTGCTGTCGATCAGCCCCTGTTCAGAGAAGTGTTGTTTTTGCATGCCTATATAGCTCGGTGTAAATCGATGTGAGTTGCATGTCTGTGTAGTTTTCAGTTGTTTGGCTGACTTCTATCTGTTGTGGCTTTTGGTGCCTTTCGTTTGATTTCTCCGTTTTTCTTTCCCGGTTTGTTTGTACAGTGTGTTccagaggctgctgctgctgttttttggGGTTATTGAgcaaaaaatagaaaatgaaaacaaagaaaaatcctCCTCCAAACAGAATTGACAGCAGTTATTATCATGAGGTGATGACGGGTGTGAATTCAGTTTCTGGGTGGATTGTCCCTTTAAAGTGTGCCAACTACAGATGCCAGTGTTGTACAGCAGTGAAAAGCTTACACTATTTACTAAAATAAaccatttctctgtttttttca

Function

symbol description
spin1 Enables methylated histone binding activity. Involved in positive regulation of Wnt signaling pathway; positive regulation of transcription, DNA-templated; and rRNA transcription. Located in cytosol and nucleus.

NR:

description
spindlin-Z-like

GO:

id name namespace
GO:0007276 gamete generation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82736 False 514 lncRNA 0.47 3 15249744 15352625
XM_039803705.1 True 5490 mRNA 0.45 8 15281965 15296227

Neighbor

gene id symbol gene type direction distance location
LOC120560530 NA coding upstream 268127 14979874 ~ 14981617 (+)
c5 NA coding upstream 324807 14891572 ~ 14924937 (+)
prdm12b LOC102306279,LOC102776562,LOC102208027,LOC101478941 coding upstream 363290 14878628 ~ 14886454 (+)
LOC120560087 LOC103371518 coding upstream 382089 14842071 ~ 14867655 (+)
kazald3 kazald1,LOC107097908 coding upstream 477592 14767716 ~ 14772152 (+)
LOC120560841 ppp2cb,LOC100710281,LOC105920955,LOC101157601,LOC103131405 coding downstream 63831 15416456 ~ 15430582 (+)
LOC120560844 LOC104935222,LOC101481450,LOC102294942,LOC106534038,LOC108245882,LOC100710015,LOC107386134 coding downstream 83116 15435741 ~ 15467408 (+)
LOC120560525 NA coding downstream 156297 15508922 ~ 15520405 (+)
LOC120560850 LOC104965067,LOC101155523 coding downstream 205879 15558504 ~ 15562994 (+)
LOC120561471 NA coding downstream 252341 15604966 ~ 15612582 (+)
G61757 NA non-coding upstream 8302 15240416 ~ 15241442 (+)
G61754 NA non-coding upstream 24775 15224547 ~ 15224969 (+)
G61756 NA non-coding upstream 25279 15224114 ~ 15224465 (+)
G61730 LOC102301232,LOC102776762,LOC101476977 non-coding upstream 97193 15146100 ~ 15152551 (+)
G61540 NA non-coding upstream 221926 15027605 ~ 15027818 (+)
G61782 LOC106527778 non-coding downstream 22152 15374777 ~ 15376002 (+)
G61867 NA non-coding downstream 180242 15532867 ~ 15572973 (+)
LOC120560847 NA non-coding downstream 186730 15539355 ~ 15539844 (+)
LOC120560848 NA non-coding downstream 188244 15540869 ~ 15545477 (+)
G61966 NA non-coding downstream 608976 15961601 ~ 16045838 (+)
nudt18 nudt18,LOC104957221 other upstream 25729 15219137 ~ 15224015 (+)
G61535 LOC103368073 other upstream 166296 15078874 ~ 15083448 (+)
cntrl NA other upstream 269947 14928373 ~ 14979797 (+)
surf4l surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other upstream 453801 14774513 ~ 14795943 (+)
G61514 surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other upstream 455142 14699525 ~ 14794602 (+)
zgc:101664 NA other downstream 79083 15431708 ~ 15434935 (+)
LOC120560526 NA other downstream 166155 15518780 ~ 15532796 (+)
mctp1a mctp1,LOC102782783 other downstream 284173 15636798 ~ 15777141 (+)
fam172a fam172a,LOC102785942 other downstream 591073 15943698 ~ 16099484 (+)
LOC120560890 NA other downstream 1115685 16468310 ~ 16475905 (+)

Expression


Co-expression Network