sdhaf1 (sdhaf1,LOC102800057)


Basic Information

Item Value
gene id sdhaf1
gene name sdhaf1,LOC102800057
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15216550 ~ 15218422 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU82785
CGCGTAGTAAGGTCACACAGAGGCTGTTTACATCAGCTAATACAGCTGATTATACAGCGTGCAGGTTATACTTTTACATGTCAGTTGATTAACTTACTGGTGATTTACTAACGGGACCAGTTTAACCAGAGGAAATGGGTTGAATTGGTAAACATTTGTTAAACCAGTATATAACGGTCAAACATCAGATCCTGCATCAGTTCAACACCTGAACTCCTCAGACGacttctcagccaatcagagcaccTTGTTCACCCCCTTACCTCAGAAAGCCTGTATAAAGACCAGAGCCGAAAAACTCACCAAAAATACCGTAGTGTCAGGGTCCTCAGCGTTTAATCTGTAGCTCCAGCTTTAAACTGATGACCCATTCAGGGTTCAACATCACATTAATGTAATCATAAATGTGCCCTCAGACTGACACGAGAAGAAGCTCAGTGATGTGCTGAGAGCTGAACTTTCCCATTCACTTCAATACAGTCAGAGTTTGATCACAGCAGCATCATTAGAGGACATTAAAGGAACATCATTAGAGGAACTGCAGCTGAATATACTCCAGTACCGGAGTCATCGTGTCCTTCTAGCTCTCTGCTGACCTGGTTTCTGATCTTTGGTCTGGTGAGTTAGTCCGATGGCGCGGCACAGTAAGCTGCAGAAGCAGGTCCTTGCTCTGTACCGGCAGTTTCTGCGGGCCGGTCAGGACAAACCAGGCTTCATCCCCCGAATCCGTGACGAGTTCAGAGTGAATGCTTGCATCAAGAAGACGGACGTGATGCACATTGAGTATCTGTACAGGCGAGGACAGAGACAGCTGGAGCAGCTGAGGGACGTAAACACCAAACAGCTAGGCTCTTTCTCCAAACCTGCAGAGAAGAGCTGACCTCTGACTTGCTGTATGTCTGTGGCTGTTAATGCCACAACAAATACTTGGTTACGACCAAACTGTAATGCTGAGATGCTGAAGTCCAATAGGCAAGCAAATGCTCAGTATGGAGAAAAGATGTGATGCGATTTAtcataaaatactttttttggaTGTTAAATATGCAAAATGTTGTCTGACTGTTTAGACTCATGAACATGAATGAACTTACTTTGACACACTAGatgataattataataatacactCAGTGATTTGGATAAAACTATGATGTGGAAAAGATTAATGCATTCTGCATGTTAAAGAGATAGTTTGGATTTTTTGAAGTAGGGTCAGGGTGCAAAATTAACGTTTTTGTCCAGtggccaaatggctaatgaatatTAAAATTTTACCATCCACTCAATAGa
>XM_039803700.1
CGTGGTTTTGTAACGCGTAGTAAGGTCACACAGAGGCTGTTTACATCAGCTAATACAGCTGATTATACAGCGTGCAGGTTATACTTTTACATGTCAGTTGATTAACTTACTGGTGATTTACTAACGGGACCAGTTTAACCAGAGGAAATGGGTTGAATTGGTAAACATTTGTTAAACCAGTATATAACGGTCAAACATCAGATCCTGCATCAGTTCAACACCTGAACTCCTCAGACGacttctcagccaatcagagcaccTTGTTCACCCCCTTACCTCAGAAAGCCTGTATAAAGACCAGAGCCGAAAAACTCACCAAAAATACCGTAGTGTCAGGGTCCTCAGCGTTTAATCTGTAGCTCCAGCTTTAAACTGATGACCCATTCAGGGTTCAACATCACATTAATGTAATCATAAATGTGCCCTCAGACTGACACGAGAAGAAGCTCAGTGATGTGCTGAGAGCTGAACTTTCCCATTCACTTCAATACAGTCAGAGTTTGATCACAGCAGCATCATTAGAGGACATTAAAGGAACATCATTAGAGGAACTGCAGCTGAATATACTCCAGTACCGGAGTCATCGTGTCCTTCTAGCTCTCTGCTGACCTGGTTTCTGATCTTTGGTCTGGTGAGTTAGTCCGATGGCGCGGCACAGTAAGCTGCAGAAGCAGGTCCTTGCTCTGTACCGGCAGTTTCTGCGGGCCGGTCAGGACAAACCAGGCTTCATCCCCCGAATCCGTGACGAGTTCAGAGTGAATGCTTGCATCAAGAAGACGGACGTGATGCACATTGAGTATCTGTACAGGCGAGGACAGAGACAGCTGGAGCAGCTGAGGGACGTAAACACCAAACAGCTAGGCTCTTTCTCCAAACCTGCAGAGAAGAGCTGACCTCTGACTTGCTGTATGTCTGTGGCTGTTAATGCCACAACAAATACTTGGTTACGACCAAACTGTAATGCTGAGATGCTGAAGTCCAATAGGCAAGCAAATGCTCAGTATGGAGAAAAGATGTGATGCGATTTAtcataaaatactttttttggaTGTTAAATATGCAAAATGTTGTCTGACTGTTTAGACTCATGAACATGAATGAACTTACTTTGACACACTAGatgataattataataatacactCAGTGATTTGGATAAAACTATGATGTGGAAAAGATTAATGCATTCTGCATGTTAAAGAGATAGTTTGGATTTTTTGAAGTAGGGTCAGGGTGCAAAATTAACGTTTTTGTCCAGtggccaaatggctaatgaatatTAAAATTTTACCATCCACTCAATA

Function

symbol description
sdhaf1 Predicted to be involved in mitochondrial respiratory chain complex II assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in mitochondrial complex II deficiency. Orthologous to human SDHAF1 (succinate dehydrogenase complex assembly factor 1).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K18167 SDHAF1; succinate dehydrogenase assembly factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU82785 False 1291 TUCP 0.43 2 15216550 15218409
XM_039803700.1 True 1302 mRNA 0.43 2 15216552 15218422

Neighbor

gene id symbol gene type direction distance location
ercc6l LOC102777350 coding downstream 4846 15202139 ~ 15211704 (-)
adam9 adam9 coding downstream 17200 15158381 ~ 15199350 (-)
ogdha LOC103368074,LOC101476977,LOC103397981 coding downstream 63941 15109016 ~ 15152609 (-)
LOC120560949 LOC103368073,LOC103397982 coding downstream 112442 15078885 ~ 15104108 (-)
ppiaa LOC107103142,LOC106904245,LOC103470758,LOC106953379,LOC103129635 coding downstream 140155 15070267 ~ 15076395 (-)
LOC120560836 LOC103398011,LOC102234551,LOC103373450,LOC107386141,LOC101064581 coding upstream 90636 15309058 ~ 15317062 (-)
si:dkey-220o5.5 NA coding upstream 125001 15343423 ~ 15363941 (-)
rsph14 NA coding upstream 185426 15403848 ~ 15408301 (-)
srp19 srp19 coding upstream 190774 15409196 ~ 15415459 (-)
LOC120560845 NA coding upstream 253648 15472070 ~ 15502444 (-)
G61742 NA non-coding downstream 36131 15152994 ~ 15180419 (-)
G61740 NA non-coding downstream 86587 15106265 ~ 15129963 (-)
G61711 NA non-coding downstream 147657 15068542 ~ 15068893 (-)
G61706 NA non-coding downstream 189155 15026519 ~ 15027395 (-)
G61699 NA non-coding downstream 222770 14993477 ~ 14993780 (-)
G61813 mak16 non-coding upstream 85307 15303729 ~ 15306067 (-)
G61837 ppp2cb,LOC102205414,LOC106587035,LOC100710281,LOC105025380 non-coding upstream 207129 15425551 ~ 15427495 (-)
G61894 LOC103373661,LOC101481450,LOC102205139 non-coding upstream 240411 15458833 ~ 15462921 (-)
LOC120560849 NA non-coding upstream 323410 15541832 ~ 15544351 (-)
G61956 NA non-coding upstream 555257 15773679 ~ 15777138 (-)
tti2 tti2 other downstream 175170 15029876 ~ 15041380 (-)
LOC120559984 NA other downstream 198734 15013533 ~ 15017816 (-)
trnas-gcu_3 NA other downstream 247973 14968496 ~ 14968577 (-)
trnas-gcu_2 NA other downstream 248390 14968079 ~ 14968160 (-)
trnas-gcu_1 NA other downstream 248790 14967679 ~ 14967760 (-)
LOC120560831 NA other upstream 6548 15224970 ~ 15232693 (-)
mfsd14bb LOC103398013,LOC102210719 other upstream 34193 15252615 ~ 15278184 (-)
LOC120560838 NA other upstream 150604 15369026 ~ 15402324 (-)
LOC120560105 LOC103362503 other upstream 933998 16152420 ~ 16452488 (-)
G62064 NA other upstream 1286204 16504626 ~ 16505067 (-)

Expression


Co-expression Network