fam172a (fam172a,LOC102785942)


Basic Information

Item Value
gene id fam172a
gene name fam172a,LOC102785942
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15943698 ~ 16099484 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU82990
TCCTGTTTAAGAAATTTCGAGGAAGCAGAAGCAACTGGACAGTCGCGTATAGCTACTGATGATTTGCTGTCAAGAATAGACTTAGATGAACTGATGAAGAAAGATGAACCTCCTTTCACTTTCCCCAAAACACTGGAGGAGTTTGAATATGCCTTTAATGAATATGGCCAGCTCAGACATATAAAAACAGGAGAGCTCTTTGTATTTAATGCCAGGGAGGATCTCCACCGCTGGAACCAGAAACGCTATGAAGCTCTTGGAGAGatCATCACTCAGTATGTTTATGAGCTGTTGGAGAAAAAGTGCAACATGACTAAAGCAATCCTGCCAGT
>XM_039802845.1
GGAAGCTTCACGCTCTCCGTGCTCTGCACTGCTCAGAGTCCTTCCTGTTTAAGAAATTTCGAGGAAGCAGAAGCAACTGGACAGTCGCGTATAGCTACTGATGGATGCATCTGATTGACCTTTGGGAGGGGAGGACCCATGCTCTCTCATCTTTGCGCTGCCACACCAGCCCTGTACATATTGTGGATCACTATGGCCCAGATAGCTGGccaggaggacagagagaaaaccACTGCACTCAAAGATTTGCTGTCAAGAATAGACTTAGATGAACTGATGAAGAAAGATGAACCTCCTTTCACTTTCCCCAAAACACTGGAGGAGTTTGAATATGCCTTTAATGAATATGGCCAGCTCAGACATATAAAAACAGGAGAGCTCTTTGTATTTAATGCCAGGGAGGATCTCCACCGCTGGAACCAGAAACGCTATGAAGCTCTTGGAGAGatCATCACTCAGTATGTTTATGAGCTGTTGGAGAAAAAGTGCAACATGACTAAAGCAATCCTGCCAGTGGATGCTACAGAAGATGAACCCACCAGTTTCATCTACCTGAGCCCAGATGCCTTGACCAACCCTTCTAAACTGCTGGTGCTGATCCAGGGCAGTGGCGTGGTGCGGGCCGGGCAGTGGGCCCGTAGACTCATCATCAACCAGGACCTGGACTCAGGGACACAAATCCCCTTCATCACCAGAGCCATGGAGGAGGGCTACGGTGTGATGGTGCTCAACCCCAATGAGAACTACCTGGAGGTGGAGAAGCCAGCCATGTCCTCTCCCCTGCCCTCTGCTACTGAAACCTCGGACGAACCTGCTGAAAAGAGGGAACGCAAAGATGATAAAGAGggcaaaaagaagagagaatttTATGAGAAGTACCGTAACCCACAGAAGGAGACGGAGACCGAACAGATCCCTATACGGGAAAATGGTTCCTCCGAGGAACACGTGCTGTATGTGTGGGACCACTTTGTGTCCAAAGCTGCAGCCAAGAATATCTTCATCATGGCCCACAGCTACGGAGGGCTGTCTTTCGTTGAGCTGATGAATCAGAGGGAAatgcaggtgaagaacagagTGTGTGCCGTGGCTCTGACTGACTCGGCTCACAACATCTGGCTGCAGGAGACCAGCAAAGGCACACAGGACTGGATGCAGCAGCACTGTTGTAACTGGGTATCAAGTCCAGAGCCCCTGGACACACCACTGGATCCCATGCTGCCAGACTGCCCCCAAGTCTCTGCAGGCACAGAGCGGCATGAGCTGACCTCCTGGGTGAGTTTCAACACCATCTTCAGGTTCTTCAGTGAGGTCCTGGAGGCGAAAGAGGATGAGGAGGCGGAGGAGACCTCCAACGCTGTCACCACACGCAGCAGCTCCCTCAAAAACAAACACCAAGATTTGTAGAGGACTGACAAAAATGACTTGGAACAAG
>XM_039802847.1
GTAAGCTATAAGCTTGTAGCCTGTACAGGAGTGTACTATTCGACAGTGTTATATTGTGTTGGCTCACTGCCACCTTTCAGGTGCAGCAAGCTTTGAGGCAATTACCTTCATAGTCTGGATGCATCTGATTGACCTTTGGGAGGGGAGGACCCATGCTCTCTCATCTTTGCGCTGCCACACCAGCCCTGTACATATTGTGGATCACTATGGCCCAGATAGCTGGccaggaggacagagagaaaaccACTGCACTCAAAGATTTGCTGTCAAGAATAGACTTAGATGAACTGATGAAGAAAGATGAACCTCCTTTCACTTTCCCCAAAACACTGGAGGAGTTTGAATATGCCTTTAATGAATATGGCCAGCTCAGACATATAAAAACAGGAGAGCTCTTTGTATTTAATGCCAGGGAGGATCTCCACCGCTGGAACCAGAAACGCTATGAAGCTCTTGGAGAGatCATCACTCAGTATGTTTATGAGCTGTTGGAGAAAAAGTGCAACATGACTAAAGCAATCCTGCCAGTGGATGCTACAGAAGATGAACCCACCAGTTTCATCTACCTGAGCCCAGATGCCTTGACCAACCCTTCTAAACTGCTGGTGCTGATCCAGGGCAGTGGCGTGGTGCGGGCCGGGCAGTGGGCCCGTAGACTCATCATCAACCAGGACCTGGACTCAGGGACACAAATCCCCTTCATCACCAGAGCCATGGAGGAGGGCTACGGTGTGATGGTGCTCAACCCCAATGAGAACTACCTGGAGGTGGAGAAGCCAGCCATGTCCTCTCCCCTGCCCTCTGCTACTGAAACCTCGGACGAACCTGCTGAAAAGAGGGAACGCAAAGATGATAAAGAGggcaaaaagaagagagaatttTATGAGAAGTACCGTAACCCACAGAAGGAGACGGAGACCGAACAGATCCCTATACGGGAAAATGGTTCCTCCGAGGAACACGTGCTGTATGTGTGGGACCACTTTGTGTCCAAAGCTGCAGCCAAGAATATCTTCATCATGGCCCACAGCTACGGAGGGCTGTCTTTCGTTGAGCTGATGAATCAGAGGGAAatgcaggtgaagaacagagTGTGTGCCGTGGCTCTGACTGACTCGGCTCACAACATCTGGCTGCAGGAGACCAGCAAAGGCACACAGGACTGGATGCAGCAGCACTGTTGTAACTGGGTATCAAGTCCAGAGCCCCTGGACACACCACTGGATCCCATGCTGCCAGACTGCCCCCAAGTCTCTGCAGGCACAGAGCGGCATGAGCTGACCTCCTGGGTGAGTTTCAACACCATCTTCAGGTTCTTCAGTGAGGTCCTGGAGGCGAAAGAGGATGAGGAGGCGGAGGAGACCTCCAACGCTGTCACCACACGCAGCAGCTCCCTCAAAAACAAACACCAAGATTTGTAGAGGACTGACAAAAATGACTTGGAACAAG
>XM_039802848.1
GGAAGCTTCACGCTCTCCGTGCTCTGCACTGCTCAGAGTCCTTCCTGTTTAAGAAATTTCGAGGAAGCAGAAGCAACTGGACAGTCGCGTATAGCTACTGATGGATGCATCTGATTGACCTTTGGGAGGGGAGGACCCATGCTCTCTCATCTTTGCGCTGCCACACCAGCCCTGTACATATTGTGGATCACTATGGCCCAGATAGCTGGccaggaggacagagagaaaaccACTGCACTCAAAGATTTGCTGTCAAGAATAGACTTAGATGAACTGATGAAGAAAGATGAACCTCCTTTCACTTTCCCCAAAACACTGGAGGAGTTTGAATATGCCTTTAATGAATATGGCCAGCTCAGACATATAAAAACAGGAGAGCTCTTTGTATTTAATGCCAGGGAGGATCTCCACCGCTGGAACCAGAAACGCTATGAAGCTCTTGGAGAGatCATCACTCAGTATGTTTATGAGCTGTTGGAGAAAAAGTGCAACATGACTAAAGCAATCCTGCCAGTGGATGCTACAGAAGATGAACCCACCAGTTTCATCTACCTGAGCCCAGATGCCTTGACCAACCCTTCTAAACTGCTGGTGCTGATCCAGGGCAGTGGCGTGGTGCGGGCCGGGCAGTGGGCCCGTAGACTCATCATCAACCAGGACCTGGACTCAGGGACACAAATCCCCTTCATCACCAGAGCCATGGAGGAGGGCTACGGTGTGATGGTGCTCAACCCCAATGAGAACTACCTGGAGGTGGAGAAGCCAGCCATGTCCTCTCCCCTGCCCTCTGCTACTGAAACCTCGGACGAACCTGCTGAAAAGAGGGAACGCAAAGATGATAAAGAGggcaaaaagaagagagaatttTATGAGAAGTACCGTAACCCACAGAAGGAGACGGAGACCGAACAGATCCCTATACGGGAAAATGGTTCCTCCGAGGAACACGTGCTGTATGTGTGGGACCACTTTGTGTCCAAAGCTGCAGCCAAGAATATCTTCATCATGGCCCACAGCTACGGAGGGCTGTCTTTCGTTGAGCTGATGAATCAGAGGGAAatgcaggtgaagaacagagTGTGTGCCGTGGCTCTGACTGACTCGGCTCACAACATCTGGCTGCAGGAGACCAGCAAAGGCACACAGGACTGGATGCAGCAGCACTGTTGTAACTGGGTATCAAGTCCAGAGCCCCTGGACACACCACTGGATCCCATGCTGCCAGACTGCCCCCAAGTCTCTGCAGCCTCCCCAGGGCTCCTGTTTGCTGACATCTCTCTCTGACACAACATGAAAAAG
>XM_039802849.1
GCACTGCTCAGAGTCCTTCCTGTTTAAGAAATTTCGAGGAAGCAGAAGCAACTGGACAGTCGCGTATAGCTACTGATGATTTGCTGTCAAGAATAGACTTAGATGAACTGATGAAGAAAGATGAACCTCCTTTCACTTTCCCCAAAACACTGGAGGAGTTTGAATATGCCTTTAATGAATATGGCCAGCTCAGACATATAAAAACAGGAGAGCTCTTTGTATTTAATGCCAGGGAGGATCTCCACCGCTGGAACCAGAAACGCTATGAAGCTCTTGGAGAGatCATCACTCAGTATGTTTATGAGCTGTTGGAGAAAAAGTGCAACATGACTAAAGCAATCCTGCCAGTGGATGCTACAGAAGATGAACCCACCAGTTTCATCTACCTGAGCCCAGATGCCTTGACCAACCCTTCTAAACTGCTGGTGCTGATCCAGGGCAGTGGCGTGGTGCGGGCCGGGCAGTGGGCCCGTAGACTCATCATCAACCAGGACCTGGACTCAGGGACACAAATCCCCTTCATCACCAGAGCCATGGAGGAGGGCTACGGTGTGATGGTGCTCAACCCCAATGAGAACTACCTGGAGGTGGAGAAGCCAGCCATGTCCTCTCCCCTGCCCTCTGCTACTGAAACCTCGGACGAACCTGCTGAAAAGAGGGAACGCAAAGATGATAAAGAGggcaaaaagaagagagaatttTATGAGAAGTACCGTAACCCACAGAAGGAGACGGAGACCGAACAGATCCCTATACGGGAAAATGGTTCCTCCGAGGAACACGTGCTGTATGTGTGGGACCACTTTGTGTCCAAAGCTGCAGCCAAGAATATCTTCATCATGGCCCACAGCTACGGAGGGCTGTCTTTCGTTGAGCTGATGAATCAGAGGGAAatgcaggtgaagaacagagTGTGTGCCGTGGCTCTGACTGACTCGGCTCACAACATCTGGCTGCAGGAGACCAGCAAAGGCACACAGGACTGGATGCAGCAGCACTGTTGTAACTGGGTATCAAGTCCAGAGCCCCTGGACACACCACTGGATCCCATGCTGCCAGACTGCCCCCAAGTCTCTGCAGGCACAGAGCGGCATGAGCTGACCTCCTGGGTGAGTTTCAACACCATCTTCAGGTTCTTCAGTGAGGTCCTGGAGGCGAAAGAGGATGAGGAGGCGGAGGAGACCTCCAACGCTGTCACCACACGCAGCAGCTCCCTCAAAAACAAACACCAAGATTTGTAGAGGACTGACAAAAATGACTTGGAACAAG

Function

symbol description
fam172a Predicted to contribute to siRNA binding activity. Predicted to be involved in heterochromatin assembly by small RNA. Predicted to act upstream of or within RNA splicing; mRNA processing; and regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human FAM172A (family with sequence similarity 172 member A).

NR:

description
protein FAM172A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82990 False 332 lncRNA 0.42 4 15943740 15961114
XM_039802845.1 False 1435 mRNA 0.51 11 15943698 16099484
XM_039802847.1 True 1449 mRNA 0.51 11 15944275 16099484
XM_039802848.1 False 1299 mRNA 0.51 11 15943698 16074345
XM_039802849.1 False 1269 mRNA 0.51 10 15943723 16099484

Neighbor

gene id symbol gene type direction distance location
kiaa0825 kiaa0825 coding upstream 4845 15811685 ~ 15938853 (+)
trnac-gca_21 NA coding upstream 324554 15619073 ~ 15619144 (+)
trnac-gca_20 NA coding upstream 324883 15618744 ~ 15618815 (+)
trnac-gca_19 NA coding upstream 325742 15617885 ~ 15617956 (+)
LOC120561471 NA coding upstream 331116 15604966 ~ 15612582 (+)
LOC120561380 NA coding downstream 361754 16461238 ~ 16467976 (+)
LOC120561386 NA coding downstream 378014 16477498 ~ 16484029 (+)
LOC120561387 NA coding downstream 387910 16487394 ~ 16492635 (+)
LOC120561368 LOC104951926 coding downstream 395751 16495235 ~ 16504736 (+)
LOC120560896 LOC103362386,LOC102790232,LOC102295658,LOC102208013 coding downstream 437642 16537126 ~ 16540185 (+)
G61867 NA non-coding upstream 370725 15532867 ~ 15572973 (+)
LOC120560848 NA non-coding upstream 398221 15540869 ~ 15545477 (+)
LOC120560847 NA non-coding upstream 403854 15539355 ~ 15539844 (+)
G61782 LOC106527778 non-coding upstream 567696 15374777 ~ 15376002 (+)
G61770 LOC103398011,LOC102234551,LOC103373450,LOC107386141,LOC106527788 non-coding upstream 629120 15306447 ~ 15314578 (+)
G61975 NA non-coding downstream 23716 16123200 ~ 16198871 (+)
LOC120560394 NA non-coding downstream 35110 16134594 ~ 16142799 (+)
G62033 aqp3,LOC103362379,LOC107393848,LOC105031174 non-coding downstream 412687 16512171 ~ 16514043 (+)
G62082 NA non-coding downstream 467998 16567482 ~ 16567714 (+)
G62085 NA non-coding downstream 510993 16610477 ~ 16620136 (+)
mctp1a mctp1,LOC102782783 other upstream 166557 15636798 ~ 15777141 (+)
LOC120560526 NA other upstream 410902 15518780 ~ 15532796 (+)
zgc:101664 NA other upstream 508763 15431708 ~ 15434935 (+)
spinb spin1,LOC103373448,LOC108245887,LOC101477468,LOC100698355,LOC106527790 other upstream 591073 15249744 ~ 15352625 (+)
nudt18 nudt18,LOC104957221 other upstream 719683 15219137 ~ 15224015 (+)
LOC120560890 NA other downstream 368826 16468310 ~ 16475905 (+)
LOC120560897 LOC105925468 other downstream 433432 16532916 ~ 16534175 (+)
LOC120560947 edil3 other downstream 1186164 17285648 ~ 17414595 (+)
tmem167a tmem167a,LOC103397084 other downstream 1468529 17568013 ~ 17572705 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other downstream 1899202 17998686 ~ 18011030 (+)

Expression


Co-expression Network