LOC120560394


Basic Information

Item Value
gene id LOC120560394
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 16134594 ~ 16142799 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU83008
GATTTAATACAAATAAGTTGTTGTATGAAGATCTTTAACCACACAAAGATATTAGCAGATATATCGGAGCGTAAATATGCAAGTGCCACCTTTGGAAACGCACAGGAGGGATGGGTTGTTTGTTAAGTATTCAACAAGAGCTCTCTCTCCCGTCCCTGTCTCGGACACTCCACTGAAACTCCCCGGCCATATCTCCAGCTCTTTGAAAAGGTGAAACCAATAAGATTAAATCGGACAAAGAATTTTTTTCTGTAAGTGTATCATTAAGATTTAACTCCACAGATTGGAAAGGGGCTCCgcaggagaagaggagaggagagtgagaGGGGCAGCGAATGGGAGCAGGGTAGGGGCTCTAATAGAAAGCTGGGAAACGGcgagagaaaaaggagaaagtGGACAGCAGGACATTGAAAGAAGAAGCACCAGCCACGGCGGTTCCCAGTAGAGGAGCTGCTTTCTACCTGGATAAAACCAGCTACCGATAAGGCAAAGAGCGACACGGCGGCCAGGCGTTCGGAAACACAGCGGGATGGTCGGTGTGCTGCAAGCGACAGACACTGGGTTGAGATGTAATTTAGGGCGAGTGCTGTTTGATTACAGAATGGTGACGGTGATACCACTGCTTAGTATGAGCGTTGGGCTCACTTGACATGACAGCCCTGCACTGACTGGCTCATTGTACTGATTCATACATGTGGTAAATATTACATTAACTGTAAATAAATAGCCACTCTCGGAATAGATTTTAAGAGGCTGCTCTTGTACATTACTTACTAGTGTGTGTTTATCAAGTACTATCCAAAGCTTTTCTACTCAGAAATGAATCCAAGCATCCTGGAACTCAAATTCCTTCTCAATGATTTGTTTTGGAAAAAGACCATAGTATGCTTTTTGTGAAACTGGCAGCTGCTCTTTTAATAGCTAGAGGTCACCATAACACTCagtattaataaaacaaataagacTAGGATGGATATTAATGATGATATATACAGATGTACTGTGCATGAGCTTGAATTATGTGTGAGAGTGCTAaaggagagacacacagatgtttgtgtgtttacttgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatagccAGTCAGTTTCCCTCAGATGTTccctttgacctttgaccccacAGTTGGGGTCAAGCCCTGACAAATGAGATGGTCGAGTTCTGGCCAGAACGGCAAACATTCCACAACAATcttctgtcctcctcctcccctctcctcataTCCGTCATTCCTCACCCCTTAACTCCTCTCAGTATGTCTCCCCCACGACTaagagagagccagagagagttCTCATTACAAACAGACATGTTTTATTGAATTTGCGGTGGGAATCTTAAAGCACACACCCTTCAAATTAAGAATTACGGCATTGGTTATATTTAATATCCCCGACATCTGCCTTGTTTACAGAAggggagaaaacaaaaacaaaacaaaaatgagtaCAATCTTAGAGGAGAAGCTGTGTTAAAGATTTGGATATTACAACCCTGCACTTTGAAagcacactgtgtgtgtttggaaagCTTGTCAGTGATGTCAAGGATGAGAAATGTTgcagtggggtttttttttttttacacacgcTGCTGGCTCCAGCATTTCCGGCAACATTTCTCACTCTGCCTCCCTCACACCATCCGCTCTGCTGCAATATCCCCACATTTTTCCATCCTTTCACTTCTTCCCctacccctccctccctccctccctccctccctgtttgccttctctctgctctctgaccACTCTTGCTCCCTTTACCCATTCCTCTCTGCTGCACCACCCTGCCCAATCTCagcctctccctccccctccctttttcctcCACCCACTATTTTCTCTGATTTTCTAACATGCCGTTCCACAGAATGCTACCACCTGTGTCTTTAGGGggaaaagggggagggggggggggtattggTATTCCTCTTCGGGAAGCTGGTTAAGGTAAGTGGCACCCTCTATTACAATGACACCGCAAATAATGGTTCTGCCTGTTGTGTTTCTAGATTAACTTTTTTTCATGGAATGACCCCGGCTTCCTAAGCATCACCACCCTCCATCAGAGCTCTAGATACAAGTCACTgcggtaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtcaccatCAATGAACGTCAGCAGAGCAACCACAGCGCCACAGAGGAGCCTGGAGACCAACAAAGCTGGTTGATACTGTAACACTGAGTGGATCATGCTCTTGAACTTGCTTTCAAAATGATGTAATATTACAAAAAGGCAATGCAACACAGCAAAGATcttaataaaaacacatcaatctCGA
>XR_005639478.1
cacacacacacacacacacacacacacaataatatttTAAACAAAGAATATAGCCCTTTCtcttacacacccacacacatggaCAAAATGCtcttaactttttttattttgtttgagagtgtgtgtctggtgttggCACATGTGTGTAAAAAGACAGTGAAGTGAAGGTGGCCTGTGTTTAGTGTCCAGACCTGGCAGATTGTGACCTTATCAATGTGAAACTCTTAAGATAAATTATTCATAGCACCTGTTTGATGTCTCCGGCCAAAGAATGACAAAGGTGTAAGATTTAAGATCCTTCTTAAAAGCCATGAATATCAGCTGCTGTGCTACCTGTCTCCCCTTAGAGTAGAAAAAGAGGGAGATAGAGAGCTGCATTTTAAAGCGCAAAAATGAACAATTTGTTTCCTAACAGGGGGTGTAGAAGAGAGCGACCACAGACGAGCCATACAGTACTGTTTAGTATGCCAATCATCATTTGCACATTAATAAAACTCAACAGGAACTCAAGCTACCATTTACAGTGTGCAAGGTGTGGCTTCTGTCTTACTGTTACTGTATGTGACTCACAGGTGTCCAGTGATCATTGAAGCGGGCCACACACACTGTCGCTGCCAGCTTTCTCCTCACTTCAATGTGAAACGTGAAGCAGAGTCTGAGTGATTCGGTGGAGCTAACCTTGCCCTTTTGTAACTGAGTTTCTGTTGTGTCTCCTCGCAGGCAGAGAGCGACACGGCGGCCAGGCGTTCGGAAACACAGCGGGATGGTCGGTGTGCTGCAAGCGACAGACACTGGGTTGAGATGTAATTTAGGGCGAGTGCTGTTTGATTACAGAATGGTGACGGTGATACCACTGCTTAGTATGAGCGTTGGGCTCACTTGACATGACAGCCCTGCACTGACTGGCTCATTGTACTGATTCATACATGTGATTAACTTTTTTTCATGGAATGACCCCGGCTTCCTAAGCATCACCACCCTCCATCAGAGCTCTAGATACAAGTCACTgcggtaaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtcaccatCAATGAACGTCAGCAGAGCAACCACAGCGCCACAGAGGAGCCTGGAGACCAACAAAGCTGGTTGATACTGTAACACTGAGTGGATCATGCTCTTGAACTTGCTTTCAAAATGATGTAATATTACAAAAAGGCAATGCAACACAGCAAAGATcttaataaaaacacatcaatctCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83008 True 2430 lncRNA 0.45 2 16134594 16142799
XR_005639478.1 False 1311 lncRNA 0.45 2 16140139 16142799

Neighbor

gene id symbol gene type direction distance location
kiaa0825 kiaa0825 coding upstream 195741 15811685 ~ 15938853 (+)
trnac-gca_21 NA coding upstream 515450 15619073 ~ 15619144 (+)
trnac-gca_20 NA coding upstream 515779 15618744 ~ 15618815 (+)
trnac-gca_19 NA coding upstream 516638 15617885 ~ 15617956 (+)
LOC120561471 NA coding upstream 522012 15604966 ~ 15612582 (+)
LOC120561380 NA coding downstream 318439 16461238 ~ 16467976 (+)
LOC120561386 NA coding downstream 334699 16477498 ~ 16484029 (+)
LOC120561387 NA coding downstream 344595 16487394 ~ 16492635 (+)
LOC120561368 LOC104951926 coding downstream 352436 16495235 ~ 16504736 (+)
LOC120560896 LOC103362386,LOC102790232,LOC102295658,LOC102208013 coding downstream 394327 16537126 ~ 16540185 (+)
G61968 NA non-coding upstream 77889 16035451 ~ 16056705 (+)
G61970 NA non-coding upstream 83901 16048383 ~ 16050693 (+)
G61966 NA non-coding upstream 88756 15961601 ~ 16045838 (+)
G61867 NA non-coding upstream 561621 15532867 ~ 15572973 (+)
G62033 aqp3,LOC103362379,LOC107393848,LOC105031174 non-coding downstream 369372 16512171 ~ 16514043 (+)
G62082 NA non-coding downstream 424683 16567482 ~ 16567714 (+)
G62085 NA non-coding downstream 467678 16610477 ~ 16620136 (+)
LOC120560795 NA non-coding downstream 753789 16896588 ~ 16943176 (+)
G62126 NA non-coding downstream 810126 16952925 ~ 16953637 (+)
fam172a fam172a,LOC102785942 other upstream 35110 15943698 ~ 16099484 (+)
mctp1a mctp1,LOC102782783 other upstream 357453 15636798 ~ 15777141 (+)
LOC120560526 NA other upstream 601798 15518780 ~ 15532796 (+)
zgc:101664 NA other upstream 699659 15431708 ~ 15434935 (+)
spinb spin1,LOC103373448,LOC108245887,LOC101477468,LOC100698355,LOC106527790 other upstream 781969 15249744 ~ 15352625 (+)
LOC120560890 NA other downstream 325511 16468310 ~ 16475905 (+)
LOC120560897 LOC105925468 other downstream 390117 16532916 ~ 16534175 (+)
LOC120560947 edil3 other downstream 1142849 17285648 ~ 17414595 (+)
tmem167a tmem167a,LOC103397084 other downstream 1425214 17568013 ~ 17572705 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other downstream 1855887 17998686 ~ 18011030 (+)

Expression


Co-expression Network