LOC120560105 (LOC103362503)


Basic Information

Item Value
gene id LOC120560105
gene name LOC103362503
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 16152420 ~ 16452488 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU83054
gagaaagaaaacacagtgcAAGACTCCAGGCAGGTTCAACACAAGCTGCTTCACGGTCTGGAGAGACCAGAGGGCTCTGAGGAGTACGAGAAGGATGAAGAAAGTGAGAGTGCAGAGGAAGACGAAAGACTAAACAAAGAGGAGGGAGATGGAGCGTTACACGAATCAGCGTTTGCCATTGCCAGGTCTGCAACGGGGATGGACAGGAG
>XM_039802276.1
TGTGGTGAATGCAATGAGGGGAGGTTGGGCGGAAATGAAGTCAGGGCCACAAGACAACCAAATGCAAACAATGTGCGAAAACAAATGGACCAACGACAGAAGTTATAAACGGAGAAAAGGAAGCGTGATATAAGAAGACAGTGAAATGAAAAGTTCTAGTCCTAGCATCGGCACAGGACATACAGTGTGACTTGGATATGAATCTGCTTTGCTGGGGTAGTGGGGACCTTGGCCAGACTGGCCATGGCAGACCAGGGGACATCGGTCCAGAGGAGGCCCATCTGAGAGACTTCACAATGGCAAGGCTGGGCAGAGCGAAGCTCCTGGCATGTGGATCCAGTCACTCCATTGTGGTTACAGTGGACAACAAGATCTTTGCATGGGGGAATGGCACCAGTGGACAGCTGGGTAACGGAGAGAAGGCAGTAAAGGACCAGCCAGTCAAGGTTAAGTTGCCACAGGAACTGAACGTTGAAGGAAGCAACGCAGATGTGGATGTCGTCGACATTGTTGGTGTGGCCTGTGGAAGCAGACACTCCTTCATATGGACTGAAACTGGGCGGGCCTACAGTTTTGGGAACAACTTCTACGCCCAGCTAGGCTATGACGTCCAGAGGCTTGACTTCAAAGACCACCAGctggcACCACGTTTGTTCCAGAATCTCCCATCCTCTCTGAAAATATCTCAAGTGGCCTGCGGAGAGCGACACACTCTGTTTGCGCTGGAGGACGGCAGTGTGGCGGCATGTGGGCAGAATGATTATGGACAAATTGGCAGTGGTTCTGAGGAAAATGTGGTCATCCCTCGGTTTGTGGAGGGTGTGGACCATGTGTCGAAAGTCACCTGTGGGGCAAACCACAATCTTGCACTGACAGGTGACGGCAGGTTGTTTCAGTGGGGATGTGGACGGGCATGTGGGAACAGAAAAAGGAACATCCTTACCCCAGAGGAAGTGACGCCACCAAGCTCGCCAGTGAGAGACATTGCTGGCGGATGTTGGCATAGCCTGCTTCTAACAGatggTGGGAATGTCTTCTCCTGGGGGATGGGGCAAGAGGGACAGCTTGGACTTGGAGAGGAAGGGATTCATATCTCCACTCCTTGTCTTCTCAGCTATTCTCAGCTCGCTGAGGTCACACAGATACAAGCAGGGGACAGCTACAGTTCAGCCGTCACAGCAGGTGGAGAGCTGCTTCTCTGGGGTCAGatcccctgtgtgtcccgggTCAGTGATCATCCAGGCCTCAAAAAGCTCTGGACCCCACAGCCTGTTCCACTGGCAGGCAGAAAGGTGTGTGATGTGGCCTGTGGTACCTGGCATATGATGGCCCTCACCACAAcaAGCCGAGAGAAGAACAGTGAATGTGCTCACTCAGAAACTGAAGCTCGCTTCAGAGACCTTGTCAGTGATCCCCTGCCGACGGAGCACACcgagaaagaaaacacagtgcAAGACTCCAGGCAGGTTCAACACAAGCTGCTTCACGGTCTGGAGAGACCAGAGGGCTCTGAGGAGTACGAGAAGGATGAAGAAAGTGAGAGTGCAGAGGAAGACGAAAGACTAAACAAAGAGGAGGGAGATGGAGCGTTACACGAATCAGCGTTTGCCATTGCCAGGTCTGCAACGGGGATGGACAGGAGAGGAAATGGCCACTCATCAATCAAATCCGACCAAGGGGATGAGAGGGAGAGTTGCAGGACAGCTGCAACGTGGGAGCTAAGGAAAGAACCATGCAGAAGCAGAGGAAGCAGAGATGTTGTATTCACCACTTTGCATCTGTTACCCAGGTCAGAAGGAGAGCAATGCAGGCCCACTGCCAGCAGCTTGCCCCGGCTACTCACAGGACATCAGGCTCATAGCAGGGTTTTAGATGAGGTTCGGATGGTGAGTTTAACGATATGATCCCAGAGAACAAATCCAAATGATCCAGCTTGTCGCTAGTATGTTTCACGTATGTCTTCAAAAGACAACAAGCATCTGGGTTTGCACACATTTAatcttatttctttttctttttcaaatttgTCTCTTTAAGTACAATCCATTGCTTTTGTTAGATAGTTAGACAGTAGAGAGTGAATGGAAACATCTGGATGACCCGGTGATGTCACTGGGCTGCTGGCCCTTAACCCTTTATTTGTTATACTTACTATGAATTGTCCTTCTACAACATGCCTGAGAGAGCTAAGTGGTTTTGTACTTTGAGAGGCAGTATTACATCACTTTGGCTGAGATTAAAGAAGCAAGTATACATTAGCTGGCTGGCAGG

Function

NR:

description
PREDICTED: ultraviolet-B receptor UVR8-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83054 False 209 lncRNA 0.52 2 16153049 16155689
XM_039802276.1 True 2271 mRNA 0.50 13 16152420 16452488

Neighbor

gene id symbol gene type direction distance location
nr2f1a nr2f1,nr2f1a,LOC107671052 coding downstream 19474 16124488 ~ 16132946 (-)
slf1 slf1 coding downstream 341000 15777243 ~ 15811420 (-)
fam81b NA coding downstream 517914 15622929 ~ 15634506 (-)
LOC120560939 NA coding downstream 530192 15615792 ~ 15622228 (-)
LOC120560853 NA coding downstream 550149 15591345 ~ 15602271 (-)
aqp3a LOC103362379,LOC108242818 coding upstream 59889 16512377 ~ 16519316 (-)
nol6 nol6 coding upstream 79164 16531652 ~ 16546472 (-)
LOC120561320 NA coding upstream 94793 16547281 ~ 16548567 (-)
LOC120560423 rasa1 coding upstream 570050 17022538 ~ 17055682 (-)
LOC120560528 vcan,LOC102793126 coding upstream 1030152 17482640 ~ 17535168 (-)
G62001 NA non-coding downstream 10739 16117227 ~ 16141681 (-)
G61998 NA non-coding downstream 52037 16096421 ~ 16100383 (-)
G61996 NA non-coding downstream 169009 15982876 ~ 15983411 (-)
G61993 NA non-coding downstream 213172 15937976 ~ 15939248 (-)
G61956 NA non-coding downstream 375282 15773679 ~ 15777138 (-)
G62065 NA non-coding upstream 52782 16505270 ~ 16506122 (-)
LOC120561369 NA non-coding upstream 54558 16507046 ~ 16508251 (-)
LOC120561239 NA non-coding upstream 110982 16563470 ~ 16564460 (-)
G62103 NA non-coding upstream 157085 16609573 ~ 16663861 (-)
G62104 NA non-coding upstream 157989 16610477 ~ 16620203 (-)
LOC120560838 NA other downstream 750096 15369026 ~ 15402324 (-)
mfsd14bb LOC103398013,LOC102210719 other downstream 874236 15252615 ~ 15278184 (-)
LOC120560831 NA other downstream 919727 15224970 ~ 15232693 (-)
sdhaf1 sdhaf1,LOC102800057 other downstream 933998 15216550 ~ 15218422 (-)
tti2 tti2 other downstream 1111040 15029876 ~ 15041380 (-)
G62064 NA other upstream 52138 16504626 ~ 16505067 (-)
LOC120561322 NA other upstream 96129 16548617 ~ 16551175 (-)
LOC120560425 NA other upstream 630991 17083479 ~ 17085821 (-)
G62194 NA other upstream 671508 17123996 ~ 17124477 (-)
G62209 hapln1,LOC103373858,LOC106939955 other upstream 1025818 17478306 ~ 17480814 (-)

Expression


Co-expression Network