LOC120560890


Basic Information

Item Value
gene id LOC120560890
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 16468310 ~ 16475905 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU83070
TCCGATTAAGGACTTATGTCTGGCTTGTGAAGCTATCAACGAAGAAGCAACTTTTTCTGAAGGAGACACTGTCGCAGGCACACTCACTTTCACTTTGAAGAAAGAAACCAAAGTGAAGAGTGTGATGGTGAAAGCCAAAGGGGACGCGAACGTATCCTGGTCAGAAGGCAGCGGAGACGACCGGAGATCTTACACCGACCACAGGAGATACTTTAAACTAAAAGAGTACTTAGTTGCAGAAAATTCCGAAGagATATGCCATCATCCTTCAAGGGGTTTCATGGAAGGATTGTCTACATGCTTGAAGCCAAGGTGTCCAGGGGCTGGCTGAGGCGTTCTCGAGTACAAACAGAGTTCAATTTTGTTTCAAAGTCCTTTCCACACCTTGGCCATGTAATGTGTCCCCAGTCTGGTTCAGTGGCTAAAGAAATCGGGGTTTTCTCCAAAGAATAGGTCCAACTGTCTGCTACCGTCAACACAAAGGTTTGCTCTCCAGGTGACACTGTATCTGTTGATGCCAAGATTTGCAACTCTTCTTCCAAAAAAGTGAAGCCCAAATTCAGTTTACAGCAGGAAACAGTGTACCGCGCCAGTGGCTCCACCAATTCTAGTGACCAAACTCTATGCAAAATAGTTGGAGAGACTATCGCACTGAACTCAGAGGAAACTGTCTCCTGCCAATTGAAGATTCCTGCCGATGCCATTCCCACACTCCATCATTGTGAAATCATCTCAGTTGACCATTACCTCAAGGTGTATTTGGACATCAGTTTTGCCACTGACCCAGAGGTGGTGTTTCCACTGGTCATCGTTCCTTCCAGCTTTGCCCACCCTTACCCTGGTGAGGCTGTGGGGCCTTACCCAGCTGGGGCCCCAAGTTACAGCGACTTCCCTCCCCCTGCTTTCCCTATTGGTCCTCATCCTGTACCTGCAGGTCCAGGTGCTTATGGTTACCCAGCAACGGATCACACTCAAAATGgtattttgtattcatgaaacagcaaaatttcaaagtggctcatttggtgcatatttttcaatgtagctcttagtctcggccc
>XM_039803780.1
GTACCGTTGGTAAGTTTGGGAAACAGAGCGTGTTTTGGCTGATATACCTAAAATGTCTCCGATTAAGGACTTATGTCTGGCTTGTGAAGCTATCAACGAAGAAGCAACTTTTTCTGAAGGAGACACTGTCGCAGGCACACTCACTTTCACTTTGAAGAAAGAAACCAAAGTGAAGAGTGTGATGGTGAAAGCCAAAGGGGACGCGAACGTATCCTGGTCAGAAGGCAGCGGAGACGACCGGAGATCTTACACCGACCACAGGAGATACTTTAAACTAAAAGAGTACTTAGTTGCAGAAAATTCCGAAGGCAGTGTTCTTCCCCAAGGAGTCCATTGCTTTAAGTTCAGGTTTCAAATTCCACAGGGagATATGCCATCATCCTTCAAGGGGTTTCATGGAAGGATTGTCTACATGCTTGAAGCCAAGGTGTCCAGGGGCTGGCTGAGGCGTTCTCGAGTACAAACAGAGTTCAATTTTGTTTCAAAGTCCTTTCCACACCTTGGCCATGTAATGTGTCCCCAGTCTGGTTCAGTGGCTAAAGAAATCGGGGTTTTCTCCAAAGAATAGGTCCAACTGTCTGCTACCGTCAACACAAAGGTTTGCTCTCCAGGTGACACTGTATCTGTTGATGCCAAGATTTGCAACTCTTCTTCCAAAAAAGTGAAGCCCAAATTCAGTTTACAGCAGGAAACAGTGTACCGCGCCAGTGGCTCCACCAATTCTAGTGACCAAACTCTATGCAAAATAGTTGGAGAGACTATCGCACTGAACTCAGAGGAAACTGTCTCCTGCCAATTGAAGATTCCTGCCGATGCCATTCCCACACTCCATCATTGTGAAATCATCTCAGTTGACCATTACCTCAAGGTGTATTTGGACATCAGTTTTGCCACTGACCCAGAGGTGGTGTTTCCACTGGTCATCGTTCCTTCCAGCTTTGCCCACCCTTACCCTGGTGAGGCTGTGGGGCCTTACCCAGCTGGGGCCCCAAGTTACAGCGACTTCCCTCCCCCTGCTTTCCCTATTGGTCCTCATCCTGTACCTGCAGGTCCAGGTGCTTATGGTTACCCAGCAACGGATCACACTCAAAATGgtattttgtattcatgaaacagcaaaatttcaaagtggctcatttggtgcatatttttcaatgtagctcttagt
>XR_005639530.1
GTTTGGGAAACAGAGCGTGTTTTGGCTGATATACCTAAAATGTCTCCGATTAAGGACTTATGTCTGGCTTGTGAAGCTATCAACGAAGAAGCAACTTTTTCTGAAGGAGACACTGTCGCAGGCACACTCACTTTCACTTTGAAGAAAGAAACCAAAGTGAAGAGTGTGATGGTGAAAGCCAAAGGGGACGCGAACGTATCCTGGTCAGAAGGCAGCGGAGACGACCGGAGATCTTACACCGACCACAGGAGATACTTTAAACTAAAAGAGTACTTAGTTGCAGAAAATTCCGAAGagATATGCCATCATCCTTCAAGGGGTTTCATGGAAGGATTGTCTACATGCTTGAAGCCAAGGTGTCCAGGGGCTGGCTGAGGCGTTCTCGAGTACAAACAGAGTTCAATTTTGTTTCAAAGTCCTTTCCACACCTTGGCCATGTAATGTGTCCCCAGTCTGGTTCAGTGGCTAAAGAAATCGGGGTTTTCTCCAAAGAATAGGTCCAACTGTCTGCTACCGTCAACACAAAGGTTTGCTCTCCAGGTGACACTGTATCTGTTGATGCCAAGATTTGCAACTCTTCTTCCAAAAAAGTGAAGCCCAAATTCAGTTTACAGCAGGAAACAGTGTACCGCGCCAGTGGCTCCACCAATTCTAGTGACCAAACTCTATGCAAAATAGTTGGAGAGACTATCGCACTGAACTCAGAGGAAACTGTCTCCTGCCAATTGAAGATTCCTGCCGATGCCATTCCCACACTCCATCATTGTGAAATCATCTCAGTTGACCATTACCTCAAGGTGTATTTGGACATCAGTTTTGCCACTGACCCAGAGGTGGTGTTTCCACTGGTCATCGTTCCTTCCAGCTTTGCCCACCCTTACCCTGGTGAGGCTGTGGGGCCTTACCCAGCTGGGGCCCCAAGTTACAGCGACTTCCCTCCCCCTGCTTTCCCTATTGGTCCTCATCCTGTACCTGCAGGTCCAGGTGCTTATGGTTACCCAGCAACGGATCACACTCAAAATGgtattttgtattcatgaaacagcaaaatttcaaagtggctcatttggtgcatatttttcaatgtagctcttagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83070 False 1061 TUCP 0.47 5 16468367 16475905
XM_039803780.1 True 1168 mRNA 0.47 6 16468310 16475897
XR_005639530.1 False 1097 transcript 0.47 5 16468323 16475897

Neighbor

gene id symbol gene type direction distance location
LOC120561380 NA coding upstream 334 16461238 ~ 16467976 (+)
kiaa0825 kiaa0825 coding upstream 529457 15811685 ~ 15938853 (+)
trnac-gca_21 NA coding upstream 849166 15619073 ~ 15619144 (+)
trnac-gca_20 NA coding upstream 849495 15618744 ~ 15618815 (+)
trnac-gca_19 NA coding upstream 850354 15617885 ~ 15617956 (+)
LOC120561386 NA coding downstream 1593 16477498 ~ 16484029 (+)
LOC120561387 NA coding downstream 11489 16487394 ~ 16492635 (+)
LOC120561368 LOC104951926 coding downstream 19330 16495235 ~ 16504736 (+)
LOC120560896 LOC103362386,LOC102790232,LOC102295658,LOC102208013 coding downstream 61221 16537126 ~ 16540185 (+)
wdr54 wdr54 coding downstream 74345 16550250 ~ 16554512 (+)
G61975 NA non-coding upstream 269439 16123200 ~ 16198871 (+)
LOC120560394 NA non-coding upstream 325511 16134594 ~ 16142799 (+)
G61968 NA non-coding upstream 411605 16035451 ~ 16056705 (+)
G61970 NA non-coding upstream 417617 16048383 ~ 16050693 (+)
G61966 NA non-coding upstream 422472 15961601 ~ 16045838 (+)
G62033 aqp3,LOC103362379,LOC107393848,LOC105031174 non-coding downstream 36266 16512171 ~ 16514043 (+)
G62082 NA non-coding downstream 91577 16567482 ~ 16567714 (+)
G62085 NA non-coding downstream 134572 16610477 ~ 16620136 (+)
LOC120560795 NA non-coding downstream 420683 16896588 ~ 16943176 (+)
G62126 NA non-coding downstream 477020 16952925 ~ 16953637 (+)
fam172a fam172a,LOC102785942 other upstream 368826 15943698 ~ 16099484 (+)
mctp1a mctp1,LOC102782783 other upstream 691169 15636798 ~ 15777141 (+)
LOC120560526 NA other upstream 935514 15518780 ~ 15532796 (+)
zgc:101664 NA other upstream 1033375 15431708 ~ 15434935 (+)
spinb spin1,LOC103373448,LOC108245887,LOC101477468,LOC100698355,LOC106527790 other upstream 1115685 15249744 ~ 15352625 (+)
LOC120560897 LOC105925468 other downstream 57011 16532916 ~ 16534175 (+)
LOC120560947 edil3 other downstream 809743 17285648 ~ 17414595 (+)
tmem167a tmem167a,LOC103397084 other downstream 1092108 17568013 ~ 17572705 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other downstream 1522781 17998686 ~ 18011030 (+)
thbs4a thbs4,LOC104953147,LOC106958346 other downstream 1539500 18015405 ~ 18029386 (+)

Expression


Co-expression Network