LOC120560897 (LOC105925468)


Basic Information

Item Value
gene id LOC120560897
gene name LOC105925468
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 16532916 ~ 16534175 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU83072
GTGTTAATGCTGGGCTTGTAGGGCGAGTGAGGTGGGATACCACAGGAAGCTTATCTGGGTCAGCTACGCACTATGGGGAGCTGGTGTGTTTACCTTTTCTGTACATTACTGTGTGCCACCGGACTCTTTTACAGCCACGGTCACATTCAAGCAGAGGAATACAAAGCTAAATACTTAACTTATTTCACTACGACAGAGGACAGCAACGAAAAGCAACTGATCAATGATTTACGTGGAATTTTGCAAAGACTTCAGAACAATCAGTTTCCAGCTCTAAGAAAAAAGCACGGCTACCTGCCTGTGTGTGATCCAGGAGACCAGTGTGCACtaagaaaaggctccaggatcgGAAAACTATGCGACTGCTCTCTGCCGAGAACATGCAACTCTTTTCTACACCGCTGTTTGTGATTCTCTCTGTTACAAgtctaacaacaacaaaaaaacacagtacAAATAACTTATAAGCCTGTGATCTATCTGATGGTATTTTTCTTAAGTATTCCATTTTTGTCCTCTTTTTAGCCAACTGTAATATGTAATCCCTTTCAAATTCAGCATTGAGTGCC
>XM_039803789.1
TCTTGTGTGTTCTGAGAGAAACGTTATAACATTAAAGTATTCTGTGAACGGATTCACTCCATCCCACTTTGCTCTCTAGTGGTCATTCAGAGGAATTGAGACAACTCCACACAACACACTGAGCCAGGATCATTCACTCACCTCAGTTATTTGTTTTGAAAGTTTTGGTAGTCCGCGAAGGTGGGCATGTGAATTCAACAAGAAACTTATCTATGCAACCCAGGCATCCAGACAAGGTAAAATGGAAATCATCCTAAACATTGAAATCATCCTAAACATTGAAATCATCCTAATCATTGAAACCATCCTAAACATTGCGATGAGGCAACAGTGACGTCTCTGTCAGGAAGTCACAGAGAACAAAGTTCCTGTTCTCCACTGACGTTATAAAGGAGGCTGCTGGGAGAGGCTCAGTGTTAATGCTGGGCTTGTAGGGCGAGTGAGGTGGGATACCACAGGAAGCTTATCTGGGTCAGCTACGCACTATGGGGAGCTGGTGTGTTTACCTTTTCTGTACATTACTGTGTGCCACCGGACTCTTTTACAGCCACGGTCACATTCAAGCAGAGGAATACAAAGCTAAATACTTAACTTATTTCACTACGACAGAGGACAGCAACGAAAAGCAACTGATCAATGATTTACGTGGAATTTTGCAAAGACTTCAGAACAATCAGTTTCCAGCTCTAAGAAAAAAGCACGGCTACCTGCCTGTGTGTGATCCAGGAGACCAGTGTGCACtaagaaaaggctccaggatcgGAAAACTATGCGACTGCTCTCTGCCGAGAACATGCAACTCTTTTCTACACCGCTGTTTGTGATTCTCTCTGTTACAAgtctaacaacaacaaaaaaacacagtacAAATAACTTATAAGCCTGTGATCTATCTGATGGTATTTTTCTTAAGTATTCCATTTTTGTCCTCTTTTTAGCCAACTGTAATATGTAATCCCTTTCAAATTCAGCATTGAGTGCCAATCTATTAAATGTGCTGTTGTGGGA

Function

NR:

description
cocaine- and amphetamine-regulated transcript protein-like

GO:

id name namespace
GO:0050896 response to stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83072 False 569 TUCP 0.42 3 16533329 16534149
XM_039803789.1 True 1008 mRNA 0.42 3 16532916 16534175

Neighbor

gene id symbol gene type direction distance location
LOC120561368 LOC104951926 coding upstream 28180 16495235 ~ 16504736 (+)
LOC120561387 NA coding upstream 40281 16487394 ~ 16492635 (+)
LOC120561386 NA coding upstream 48887 16477498 ~ 16484029 (+)
LOC120561380 NA coding upstream 64940 16461238 ~ 16467976 (+)
kiaa0825 kiaa0825 coding upstream 594063 15811685 ~ 15938853 (+)
LOC120560896 LOC103362386,LOC102790232,LOC102295658,LOC102208013 coding downstream 2951 16537126 ~ 16540185 (+)
wdr54 wdr54 coding downstream 16075 16550250 ~ 16554512 (+)
rhobtb4 LOC103362416,LOC103470451 coding downstream 38153 16572328 ~ 16616256 (+)
si:dkey-40c11.2 LOC104955420,LOC104955419 coding downstream 94346 16628521 ~ 16663697 (+)
mef2cb mef2c coding downstream 290640 16824815 ~ 16895188 (+)
G62033 aqp3,LOC103362379,LOC107393848,LOC105031174 non-coding upstream 18873 16512171 ~ 16514043 (+)
G61975 NA non-coding upstream 334045 16123200 ~ 16198871 (+)
LOC120560394 NA non-coding upstream 390117 16134594 ~ 16142799 (+)
G61968 NA non-coding upstream 476211 16035451 ~ 16056705 (+)
G61970 NA non-coding upstream 482223 16048383 ~ 16050693 (+)
G62082 NA non-coding downstream 33307 16567482 ~ 16567714 (+)
G62085 NA non-coding downstream 76302 16610477 ~ 16620136 (+)
LOC120560795 NA non-coding downstream 362413 16896588 ~ 16943176 (+)
G62126 NA non-coding downstream 418750 16952925 ~ 16953637 (+)
G62184 NA non-coding downstream 543728 17077903 ~ 17084516 (+)
LOC120560890 NA other upstream 57011 16468310 ~ 16475905 (+)
fam172a fam172a,LOC102785942 other upstream 433432 15943698 ~ 16099484 (+)
mctp1a mctp1,LOC102782783 other upstream 755775 15636798 ~ 15777141 (+)
LOC120560526 NA other upstream 1000120 15518780 ~ 15532796 (+)
zgc:101664 NA other upstream 1097981 15431708 ~ 15434935 (+)
LOC120560947 edil3 other downstream 751473 17285648 ~ 17414595 (+)
tmem167a tmem167a,LOC103397084 other downstream 1033838 17568013 ~ 17572705 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other downstream 1464511 17998686 ~ 18011030 (+)
thbs4a thbs4,LOC104953147,LOC106958346 other downstream 1481230 18015405 ~ 18029386 (+)
setbp1 setbp1,LOC102781608 other downstream 1540593 18074768 ~ 18129069 (+)

Expression


Co-expression Network