G62131 (mef2c)


Basic Information

Item Value
gene id G62131
gene name mef2c
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 16882821 ~ 16885949 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU83206
GTTCTGGTTGCTAACGGGAATGGACACAGACATGTCATAGTTCGATGGGGGCACGGCCtgACACAGTCTCTGTCTGCTGATCATCAGATCAATGTCCTCGTTTATTTTCCTGTACTTGTCCTCGGACTCGGGGCTGTGGCCGACCGAGTCGTCTGCATCAGGGTCTGGGCTGTCACAGCCGTTTAGGCCCTTCTTTCTCAATGTCTGCAAACAGAGTAGTTGCACAACATAGTTGAAGGGCTTTGTGTTAGGGAACAGTGACCCACAGAGGGACAATGGTGATGACCTGTGAGGAGGCACCCTTTAGAATGAACTACCAATTAGAGGAAGTTT

Function

symbol description
mef2c Enables several functions, including DNA binding activity; DNA-binding transcription activator activity, RNA polymerase II-specific; and protein heterodimerization activity. Involved in several processes, including negative regulation of cell migration; positive regulation of cell differentiation; and regulation of transcription by RNA polymerase II. Located in cytoplasm and nuclear speck. Part of protein-containing complex. Implicated in autosomal dominant mental retardation 20.

NR:

description
myocyte-specific enhancer factor 2C isoform X12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83206 True 333 lncRNA 0.50 2 16882821 16885949

Neighbor

gene id symbol gene type direction distance location
LOC120561320 NA coding downstream 334254 16547281 ~ 16548567 (-)
nol6 nol6 coding downstream 336349 16531652 ~ 16546472 (-)
aqp3a LOC103362379,LOC108242818 coding downstream 363505 16512377 ~ 16519316 (-)
nr2f1a nr2f1,nr2f1a,LOC107671052 coding downstream 749875 16124488 ~ 16132946 (-)
slf1 slf1 coding downstream 1071401 15777243 ~ 15811420 (-)
LOC120560423 rasa1 coding upstream 136589 17022538 ~ 17055682 (-)
LOC120560528 vcan,LOC102793126 coding upstream 596691 17482640 ~ 17535168 (-)
LOC120561237 NA coding upstream 729192 17615141 ~ 17618859 (-)
f2r f2r,LOC100706519,LOC102798097 coding upstream 828587 17714536 ~ 17718413 (-)
iqgap2 iqgap2 coding upstream 832679 17718628 ~ 17755600 (-)
LOC120560320 NA non-coding downstream 47534 16821805 ~ 16835287 (-)
G62130 NA non-coding downstream 61127 16821072 ~ 16821694 (-)
G62127 NA non-coding downstream 64778 16815393 ~ 16818043 (-)
LOC120560958 NA non-coding downstream 137223 16744285 ~ 16745598 (-)
G62114 NA non-coding downstream 196462 16675692 ~ 16686359 (-)
G62183 NA non-coding upstream 179887 17065836 ~ 17066456 (-)
G62205 NA non-coding upstream 528703 17414652 ~ 17415346 (-)
G62230 NA non-coding upstream 689692 17575641 ~ 17575949 (-)
G62231 NA non-coding upstream 690270 17576219 ~ 17576552 (-)
G62318 NA non-coding upstream 955770 17841719 ~ 17842452 (-)
LOC120561322 NA other downstream 331646 16548617 ~ 16551175 (-)
G62064 NA other downstream 377754 16504626 ~ 16505067 (-)
LOC120560105 LOC103362503 other downstream 430333 16152420 ~ 16452488 (-)
LOC120560838 NA other downstream 1480497 15369026 ~ 15402324 (-)
mfsd14bb LOC103398013,LOC102210719 other downstream 1604637 15252615 ~ 15278184 (-)
LOC120560425 NA other upstream 197530 17083479 ~ 17085821 (-)
G62194 NA other upstream 238047 17123996 ~ 17124477 (-)
G62209 hapln1,LOC103373858,LOC106939955 other upstream 592357 17478306 ~ 17480814 (-)
LOC120560614 NA other upstream 648534 17534483 ~ 17568014 (-)
LOC120561236 LOC102290490,LOC106517513 other upstream 712139 17598088 ~ 17605120 (-)

Expression


Co-expression Network