LOC120560947 (edil3)


Basic Information

Item Value
gene id LOC120560947
gene name edil3
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17285648 ~ 17414595 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU83282
TTGGAGAGGGGTTCTCTCTGTGGTTTTAACTTGTTGCCATGGAAGCTATTGTACAGTGTCACTTTTTAACAAAGATGTGAAATCTGTCTGCCATGCTTCATTGGACATAATTAACCAACTTCATACCATAACTACTAAACTGTCTAAAAGACCATGTAGAGATCACACGTTATCACAttatcaaatatatttttactttGACTACAACACTTCCCCAAGCCATGATTTTACCCTAATGGGCACTGGCATTACTACTACATCAATCAAAACACTATTAATGATCTTGTATTATATGTAAAAGACTAAGAAATTGCATGGTGCGTGaattataaatgtatattatgaCAAATCATTTAAAACCTCCAGCCCTGAGAGCAATGGCTTTGATTTAGGGACCTATTTTTATGTGCATTTTTAAGTAGTTCTGAAACATTACAACACACTGCAAAAGCTTACTGAAGGTAACTGATATGTGAGACATAACCACGCACTACAGTTAAATGTGGCACTGCAGTACTGACACTGAGACTTGTAGACCGTCTCTAGTTGAATTGTCTCAATGCTCTAATATTTGATTATCGCTACACTTTTTCTAAGATATTTGGAATTATTGTTTGTGCTTgttcttttttgtatttatttagatttatttgtCTCAGCTGTCCGATGCATAAACTCTGTGTCTAATGTCTCTCTGTTGTCTTGGAGATCTAAGTTTTATCAATTACAAAGCTCAGGATAGATGTCATTCATAATTTTGAACCACAATCAATTTTGGCCACCTATTTTAagatttctttattattatttaaagaaaatgttgaaTGAGTATGAGCAGTTATTTAAACCATGTCCATGTATGCATAATTCAAATATTGAatgcagtcttttttttaatcaatccCTTTGATACAGTATGATAAATGATAATTGTTAattaatttcttcttttttcaaaagagAGCAAATgtcaatattaataatatattaatcAATGTCATTATCTCAAGCCTACAATGATGATGAACCATGGTAATTTAAATATGGACAGCCTCTTTATTTCAGGGGGTCTAATCTTTATTATCATCCTGGAGGAGAAATGATATAGTAATAAAATGTGAAAGAGCTTGTGGGTATATTCACTTGACATGACAGCAGCTCTCTGCATGTTCAAATGGTTTCAGGGAGCTAAAAATAGTTAGACACGTTAAGGTTACAGGGGATGAAGATGCGTCAAGATATTCTATTTAAGCAGTTTTCACTATGGATTCTGCTGTTGTCTGCATCATTCAGTAAATGAACAGCGATGCTTGACTGGTTAAATAAATGGAAGTAAACAAGTACCTGAGGTATTGCAGCAGTGTCAAACCTTACAGCCCCATTCTACATGGCTTAAAAATAGGCCTGGATTACTCTAGTGGTTCCCACTCTTGACTAGTTTTCCCAAAGCTCTTGAGTGCTAGAATCAGAGCTGAAAAGAGCTACTTTTATGCTCTGGGTTTCAATGTAGACTTGC
>XM_039803855.1
attttttttttttaataccacaTCTCCGTAACCTTGGAAGTCAGACCTGTTTATTGTGAGAGGATGGGACCGCTACTCCTTTCCCTCGCCCTGTGTTTGGGCGCCGCTGTCCTGCAGCATGTGAAAGCAGCAGATGGTGAGGAACCAACTTCAGCAGGCCCTTGCCATCCAAACCCTTGCCACAACAGAGGAACATGTGAGATCAGTGAGACCTACAGGGGCGACACCTTTATTGGTTACGTCTGCAAGTGTCCACCAGGCTTCAGTGGAGTTCACTGCCAACACAATATTAACGAATGTGAAAGGGACCCATGCAAGAACGGGGGCATTTGCACAGATCTGGTTGCCAACTATTCCTGCGAATGCCCAGGGGAGTACATGGGGCGGAATTGTCAATACAGATGCTCTGGACCGCTGGGCATGGAGGGCGGTATAATCTCCAACCAACAGATTACAGCCTCTTCCACCCACCGCGCTCTCTTCGGCTTGCAGAAGTGGTACCCGTACTTTGCACGCCTCAACAAGAAGGGCCTGGTCAATGCCTGGACTGCTGCCGAAAATGACAGATGGCCGTGGATCCAGATAAACCTGCAGAGGAGAATGAGGGTCACAGGCCTAATTACCCAGGGTGCAAAGCGTATCGGCAGCCCAGAGTATGTCAAGTCTTACAAAGTAGCCTACAGTGATGACGGGAAGACCTGGAGAACATACAAAGTCAAGGGCAAAGATGATGATATGATTTTCAGAGGAAATGTCGATAACAACGCTCCAtcagccaactccttcaccccTCCCATTGCAGCCCAGTACGTGCGCATTTACCCCCAAGTCTGCAGGAGGCACTGTACCTTACGCATGGAGCTGCTCGGTTGTGAGCTAACAGGCTGCTCTGAACCACTGGGAATGAAGTCAGGCCATATCCAGGACTACCAGGTCACAGCCTCCAGCATCTTCAGGACGCTCAACATGGACATGTTCACTTGGGAGCCTGGAAAGGCCCGGTTGGACAAACAAGGCAAGGTCAATGCTTGGACAGCTGGACACAGTGACCAGTCACAGTGGCTACAGGTGGACTTGCTTGTGCCTACCAAGGTGACAGGTATCATCACCCAGGGAGCTAAAGACTTTGGCCATGTCCAGTTTGTTGGCTCATACAAACTGGCGTACAGTAATGATGGGGAGCGGTGGAATGTATATCAAGATGAGAAACAGGGGAAGGACAAGGTATTCCAAGGGAACTTTGACAACGACACACACCGAAAGAACGTGATAGATCCACCCATCTACGCTCGGCTCATCCGGATCCTTCCCTGGTCATGGTACGGCAGGATCACTTTGCGTGCAGAAGTACTCGGCTGCACAGAGGAAGAGTAAAGTCCTTTCGTCCATCTTTCTTGCCATCGTCCCCCATCCCTTGGCATACTGGAGTATCTCACCCAGTATTTCAAAAATAAACTGTGCAACCTGTAAAAAGAAATCAATTTCCAATGGATTTTTCAATAATACTTGTTTGGTTGTGGTGggttgctgtttgttctttttgtaCAATGATTTAAAACCTACCCTTAATCCAGTTTTGTCTTTTAGTTCCTTCTTCAAAGTGTGatctttgtctttttattcttctcAAGATTTACCATCTTGTTTGGAATGTATTTCTGTAATATATATATGGGAGGGGTGGGGTTGGTAGTGGAGTTGGAGAGGGGTTCTCTCTGTGGTTTTAACTTGTTGCCATGGAAGCTATTGTACAGTGTCACTTTTTAACAAAGATGTGAAATCTGTCTGCCATGCTTCATTGGACATAATTAACCAACTTCATACCATAACTACTAAACTGTCTAAAAGACCATGTAGAGATCACACGTTATCACAttatcaaatatatttttactttGACTACAACACTTCCCCAAGCCATGATTTTACCCTAATGGGCACTGGCATTACTACTACATCAATCAAAACACTATTAATGATCTTGTATTATATGTAAAAGACTAAGAAATTGCATGGTGCGTGaattataaatgtatattatgaCAAATCATTTAAAACCTCCAGCCCTGAGAGCAATGGCTTTGATTTAGGGACCTATTTTTATGTGCATTTTTAAGTAGTTCTGAAACATTACAACACACTGCAAAAGCTTACTGAAGGTAACTGATATGTGAGACATAACCACGCACTACAGTTAAATGTGGCACTGCAGTACTGACACTGAGACTTGTAGACCGTCTCTAGTTGAATTGTCTCAATGCTCTAATATTTGATTATCGCTACACTTTTTCTAAGATATTTGGAATTATTGTTTGTGCTTgttcttttttgtatttatttagatttatttgtCTCAGCTGTCCGATGCATAAACTCTGTGTCTAATGTCTCTCTGTTGTCTTGGAGATCTAAGTTTTATCAATTACAAAGCTCAGGATAGATGTCATTCATAATTTTGAACCACAATCAATTTTGGCCACCTATTTTAagatttctttattattatttaaagaaaatgttgaaTGAGTATGAGCAGTTATTTAAACCATGTCCATGTATGCATAATTCAAATATTGAatgcagtcttttttttaatcaatccCTTTGATACAGTATGATAAATGATAATTGTTAattaatttcttcttttttcaaaagagAGCAAATgtcaatattaataatatattaatcAATGTCATTATCTCAAGCCTACAATGATGATGAACCATGGTAATTTAAATATGGACAGCCTCTTTATTTCAGGGGGTCTAATCTTTATTATCATCCTGGAGGAGAAATGATATAGTAATAAAATGTGAAAGAGCTTGTGGGTATATTCACTTGACATGACAGCAGCTCTCTGCATGTTCAAATGGTTTCAGGGAGCTAAAAATAGTTAGACACGTTAAGGTTACAGGGGATGAAGATGCGTCAAGATATTCTATTTAAGCAGTTTTCACTATGGATTCTGCTGTTGTCTGCATCATTCAGTAAATGAACAGCGATGCTTGACTGGTTAAATAAATGGAAGTAAACAAGTACCTGAGGTATTGCAGCAGTGTCAAACCTTACAGCCCCATTCTACATGGCTTAAAAATAGGCCTGGATTACTCTAGTGGTTCCCACTCTTGACTAGTTTTCCCAAAGCTCTTGAGTGCTAGAATCAGAGCTGAAAAGAGCTACTTTTATGCTCTGGGTTTCAATGTAGACTTGCAAGT
>XM_039803856.1
tttttttttttaataccacaTCTCCGTAACCTTGGAAGTCAGACCTGTTTATTGTGAGAGGATGGGACCGCTACTCCTTTCCCTCGCCCTGTGTTTGGGCGCCGCTGTCCTGCAGCATGTGAAAGCAGATGGTGAGGAACCAACTTCAGCAGGCCCTTGCCATCCAAACCCTTGCCACAACAGAGGAACATGTGAGATCAGTGAGACCTACAGGGGCGACACCTTTATTGGTTACGTCTGCAAGTGTCCACCAGGCTTCAGTGGAGTTCACTGCCAACACAATATTAACGAATGTGAAAGGGACCCATGCAAGAACGGGGGCATTTGCACAGATCTGGTTGCCAACTATTCCTGCGAATGCCCAGGGGAGTACATGGGGCGGAATTGTCAATACAGATGCTCTGGACCGCTGGGCATGGAGGGCGGTATAATCTCCAACCAACAGATTACAGCCTCTTCCACCCACCGCGCTCTCTTCGGCTTGCAGAAGTGGTACCCGTACTTTGCACGCCTCAACAAGAAGGGCCTGGTCAATGCCTGGACTGCTGCCGAAAATGACAGATGGCCGTGGATCCAGATAAACCTGCAGAGGAGAATGAGGGTCACAGGCCTAATTACCCAGGGTGCAAAGCGTATCGGCAGCCCAGAGTATGTCAAGTCTTACAAAGTAGCCTACAGTGATGACGGGAAGACCTGGAGAACATACAAAGTCAAGGGCAAAGATGATGATATGATTTTCAGAGGAAATGTCGATAACAACGCTCCAtcagccaactccttcaccccTCCCATTGCAGCCCAGTACGTGCGCATTTACCCCCAAGTCTGCAGGAGGCACTGTACCTTACGCATGGAGCTGCTCGGTTGTGAGCTAACAGGCTGCTCTGAACCACTGGGAATGAAGTCAGGCCATATCCAGGACTACCAGGTCACAGCCTCCAGCATCTTCAGGACGCTCAACATGGACATGTTCACTTGGGAGCCTGGAAAGGCCCGGTTGGACAAACAAGGCAAGGTCAATGCTTGGACAGCTGGACACAGTGACCAGTCACAGTGGCTACAGGTGGACTTGCTTGTGCCTACCAAGGTGACAGGTATCATCACCCAGGGAGCTAAAGACTTTGGCCATGTCCAGTTTGTTGGCTCATACAAACTGGCGTACAGTAATGATGGGGAGCGGTGGAATGTATATCAAGATGAGAAACAGGGGAAGGACAAGGTATTCCAAGGGAACTTTGACAACGACACACACCGAAAGAACGTGATAGATCCACCCATCTACGCTCGGCTCATCCGGATCCTTCCCTGGTCATGGTACGGCAGGATCACTTTGCGTGCAGAAGTACTCGGCTGCACAGAGGAAGAGTAAAGTCCTTTCGTCCATCTTTCTTGCCATCGTCCCCCATCCCTTGGCATACTGGAGTATCTCACCCAGTATTTCAAAAATAAACTGTGCAACCTGTAAAAAGAAATCAATTTCCAATGGATTTTTCAATAATACTTGTTTGGTTGTGGTGggttgctgtttgttctttttgtaCAATGATTTAAAACCTACCCTTAATCCAGTTTTGTCTTTTAGTTCCTTCTTCAAAGTGTGatctttgtctttttattcttctcAAGATTTACCATCTTGTTTGGAATGTATTTCTGTAATATATATATGGGAGGGGTGGGGTTGGTAGTGGAGTTGGAGAGGGGTTCTCTCTGTGGTTTTAACTTGTTGCCATGGAAGCTATTGTACAGTGTCACTTTTTAACAAAGATGTGAAATCTGTCTGCCATGCTTCATTGGACATAATTAACCAACTTCATACCATAACTACTAAACTGTCTAAAAGACCATGTAGAGATCACACGTTATCACAttatcaaatatatttttactttGACTACAACACTTCCCCAAGCCATGATTTTACCCTAATGGGCACTGGCATTACTACTACATCAATCAAAACACTATTAATGATCTTGTATTATATGTAAAAGACTAAGAAATTGCATGGTGCGTGaattataaatgtatattatgaCAAATCATTTAAAACCTCCAGCCCTGAGAGCAATGGCTTTGATTTAGGGACCTATTTTTATGTGCATTTTTAAGTAGTTCTGAAACATTACAACACACTGCAAAAGCTTACTGAAGGTAACTGATATGTGAGACATAACCACGCACTACAGTTAAATGTGGCACTGCAGTACTGACACTGAGACTTGTAGACCGTCTCTAGTTGAATTGTCTCAATGCTCTAATATTTGATTATCGCTACACTTTTTCTAAGATATTTGGAATTATTGTTTGTGCTTgttcttttttgtatttatttagatttatttgtCTCAGCTGTCCGATGCATAAACTCTGTGTCTAATGTCTCTCTGTTGTCTTGGAGATCTAAGTTTTATCAATTACAAAGCTCAGGATAGATGTCATTCATAATTTTGAACCACAATCAATTTTGGCCACCTATTTTAagatttctttattattatttaaagaaaatgttgaaTGAGTATGAGCAGTTATTTAAACCATGTCCATGTATGCATAATTCAAATATTGAatgcagtcttttttttaatcaatccCTTTGATACAGTATGATAAATGATAATTGTTAattaatttcttcttttttcaaaagagAGCAAATgtcaatattaataatatattaatcAATGTCATTATCTCAAGCCTACAATGATGATGAACCATGGTAATTTAAATATGGACAGCCTCTTTATTTCAGGGGGTCTAATCTTTATTATCATCCTGGAGGAGAAATGATATAGTAATAAAATGTGAAAGAGCTTGTGGGTATATTCACTTGACATGACAGCAGCTCTCTGCATGTTCAAATGGTTTCAGGGAGCTAAAAATAGTTAGACACGTTAAGGTTACAGGGGATGAAGATGCGTCAAGATATTCTATTTAAGCAGTTTTCACTATGGATTCTGCTGTTGTCTGCATCATTCAGTAAATGAACAGCGATGCTTGACTGGTTAAATAAATGGAAGTAAACAAGTACCTGAGGTATTGCAGCAGTGTCAAACCTTACAGCCCCATTCTACATGGCTTAAAAATAGGCCTGGATTACTCTAGTGGTTCCCACTCTTGACTAGTTTTCCCAAAGCTCTTGAGTGCTAGAATCAGAGCTGAAAAGAGCTACTTTTATGCTCTGGGTTTCAATGTAGACTTGCAAGT

Function

symbol description
edil3 Predicted to enable integrin binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within positive regulation of cell-substrate adhesion. Located in collagen-containing extracellular matrix and extracellular exosome.

NR:

description
PREDICTED: EGF-like repeat and discoidin I-like domain-containing protein 3 isoform X1

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24464 EDIL3; EGF-like repeat and discoidin I-like domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU83282 False 1516 lncRNA 0.34 1 17413076 17414591
XM_039803855.1 True 3218 mRNA 0.42 10 17285648 17414595
XM_039803856.1 False 3213 mRNA 0.42 10 17285650 17414595

Neighbor

gene id symbol gene type direction distance location
ccnh ccnh coding upstream 260680 17018577 ~ 17024968 (+)
tmem161b tmem161b coding upstream 307253 16959457 ~ 16978395 (+)
mef2cb mef2c coding upstream 390460 16824815 ~ 16895188 (+)
si:dkey-40c11.2 LOC104955420,LOC104955419 coding upstream 621951 16628521 ~ 16663697 (+)
rhobtb4 LOC103362416,LOC103470451 coding upstream 669392 16572328 ~ 16616256 (+)
LOC120561427 NA coding downstream 57668 17472263 ~ 17480557 (+)
LOC120560529 LOC104929280,LOC106096593,LOC106456402,LOC105940769,LOC105925442,LOC104963572,LOC105354747 coding downstream 177350 17591945 ~ 17593975 (+)
si:ch211-130m23.3 ssbp2 coding downstream 226948 17641543 ~ 17704206 (+)
LOC120560622 LOC103357060,LOC104963569 coding downstream 295595 17710190 ~ 17712781 (+)
LOC120560621 LOC102798399,LOC107393894 coding downstream 298325 17712920 ~ 17715065 (+)
G62196 NA non-coding upstream 86049 17199389 ~ 17199599 (+)
G62193 NA non-coding upstream 161164 17123606 ~ 17124484 (+)
G62188 NA non-coding upstream 191908 17093369 ~ 17093740 (+)
G62186 NA non-coding upstream 194164 17091256 ~ 17091484 (+)
G62184 NA non-coding upstream 201132 17077903 ~ 17084516 (+)
G62204 NA non-coding downstream 57 17414652 ~ 17415349 (+)
G62213 NA non-coding downstream 77795 17492390 ~ 17492729 (+)
G62214 NA non-coding downstream 78297 17492892 ~ 17493199 (+)
G62217 NA non-coding downstream 101059 17515654 ~ 17516097 (+)
LOC120560616 NA non-coding downstream 122247 17536842 ~ 17544908 (+)
LOC120560897 LOC105925468 other upstream 751473 16532916 ~ 16534175 (+)
LOC120560890 NA other upstream 809743 16468310 ~ 16475905 (+)
fam172a fam172a,LOC102785942 other upstream 1186164 15943698 ~ 16099484 (+)
mctp1a mctp1,LOC102782783 other upstream 1508507 15636798 ~ 15777141 (+)
LOC120560526 NA other upstream 1752852 15518780 ~ 15532796 (+)
tmem167a tmem167a,LOC103397084 other downstream 153418 17568013 ~ 17572705 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other downstream 584091 17998686 ~ 18011030 (+)
thbs4a thbs4,LOC104953147,LOC106958346 other downstream 600810 18015405 ~ 18029386 (+)
setbp1 setbp1,LOC102781608 other downstream 660173 18074768 ~ 18129069 (+)
G62513 NA other downstream 916110 18330705 ~ 18331230 (+)

Expression


Co-expression Network