tmem167a (tmem167a,LOC103397084)


Basic Information

Item Value
gene id tmem167a
gene name tmem167a,LOC103397084
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 17568013 ~ 17572705 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU83311
CGTATGTTCCAGAGAGCAGGAACTGTAATGTGGCTTTGACTCACAACAAAAAATGTCGGCCATTTTCAACTTCCAGTCACTGTTAACAGTGATTCTCCTCCTGATTTGTACCTGTGCCTACATCAGAGCGCTGGCTCCCAGTATGCTAGACAAGAACAAGTCCGGgcTTCTAGGAATCTTCTGGAAGTGTGCCAGAATAGGTGAGCGGAAGAGTCCCTGGGTTGCTTGCTGCTGTGTCATCATGGCTTTTAGTATACTGTTTCTACAGTAGCAGTCCAAAGAAAACCACGAATGGAAACATTGGGGAAATGAACAGACAACAAGACATGGACAGTACAATCCTAGAAGCACAACAGGGCCTCCGAGGGTATCACTTAGATAATATAAAAACGGGAGAGCCGTCACCACTCACCGTAGCcacggagagagaaaaaatgtgtcttgtgtaggggggggggaaggatGAGCTGATAGCCCAAGAGTGTGTCTAGATCCCTCCACGGACTCCGGGTCTGTCCTTGTTTGCTTATGTGGAATGTTTACTTacggatgtatgtgtgtgtgggggggggccaatttcttttttttttgttatctgcCATTTTGTTTAAAGGAAAGAAGTCATTCTGGTGGGATcaaaatgatacatttttagtCCAAAAATTTCAAACCGATGTTTTTTTGAAGTTGTCACAATTGCATCGACCATTTTGAAATTCTCCACAAAAACGGACCTTCATAAATGTTCATAACTGTTATGCGATTCACATTGAGGCTTATATTTGTAAACTGAGTTATAGCGAGGTGTGACTTAAACCCATCTCAGCACCCTGTTTGTTGCCTGTGCCCTGGTTGTTGCATCTAGAAATGATCCTTTTTCACAGCAAACAAAATGATAGTATAGCTCTTCAGGTGGCTAATAGTGCTACATGTTTGCCTCAAAGAGCTACTGATGTTTTTAAAGTCAGTCAGTTTGCTGCTATTTattaaaaacaacctttttggtcatttttggcTGTTGacatctgtttgtgtctgttgtgaCGATGCCACACTGTAAAATGAAGTGTCATTATTGACTTCAAACATGCAAAATACATGTTGATGAACCTGT
>XM_039803291.1
ACCAGCAAACGAGGTTTCGCGCGCAATGCGTCGTTACGTAACGTAAACATCTTTGGTTACGTTAGCTACGTATGTTCCAGAGAGCAGGAACTGTAATGTGGCTTTGACTCACAACAAAAAATGTCGGCCATTTTCAACTTCCAGTCACTGTTAACAGTGATTCTCCTCCTGATTTGTACCTGTGCCTACATCAGAGCGCTGGCTCCCAGTATGCTAGACAAGAACAAGTCCGGgcTTCTAGGAATCTTCTGGAAGTGTGCCAGAATAGGTGAGCGGAAGAGTCCCTGGGTTGCTTGCTGCTGTGTCATCATGGCTTTTAGTATACTGTTTCTACAGTAGCAGTCCAAAGAAAACCACGAATGGAAACATTGGGGAAATGAACAGACAACAAGACATGGACAGTACAATCCTAGAAGCACAACAGGGCCTCCGAGGGTATCACTTAGATAATATAAAAACGGGAGAGCCGTCACCACTCACCGTAGCcacggagagagaaaaaatgtgtcttgtgtaggggggggggaaggatGAGCTGATAGCCCAAGAGTGTGTCTAGATCCCTCCACGGACTCCGGGTCTGTCCTTGTTTGCTTATGTGGAATGTTTACTTacggatgtatgtgtgtgtgggggggggccaatttcttttttttttgttatctgcCATTTTGTTTAAAGGAAAGAAGTCATTCTGGTGGGATcaaaatgatacatttttagtCCAAAAATTTCAAACCGATGTTTTTTTGAAGTTGTCACAATTGCATCGACCATTTTGAAATTCTCCACAAAAACGGACCTTCATAAATGTTCATAACTGTTATGCGATTCACATTGAGGCTTATATTTGTAAACTGAGTTATAGCGAGGTGTGACTTAAACCCATCTCAGCACCCTGTTTGTTGCCTGTGCCCTGGTTGTTGCATCTAGAAATGATCCTTTTTCACAGCAAACAAAATGATAGTATAGCTCTTCAGGTGGCTAATAGTGCTACATGTTTGCCTCAAAGAGCTACTGATGTTTTTAAAGTCAGTCAGTTTGCTGCTATTTattaaaaacaacctttttggtcatttttggcTGTTGacatctgtttgtgtctgttgtgaCGATGCCACACTGTAAAATGAAGTGTCATTATTGACTTCAAACATGCAAAATACATGTTGATGAACCTGTTAAA

Function

symbol description
tmem167a Predicted to be involved in intracellular transport and protein secretion. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human TMEM167A (transmembrane protein 167A).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83311 False 1114 lncRNA 0.42 4 17568081 17572701
XM_039803291.1 True 1186 mRNA 0.42 4 17568013 17572705

Neighbor

gene id symbol gene type direction distance location
LOC120561427 NA coding upstream 87456 17472263 ~ 17480557 (+)
ccnh ccnh coding upstream 543045 17018577 ~ 17024968 (+)
tmem161b tmem161b coding upstream 589618 16959457 ~ 16978395 (+)
mef2cb mef2c coding upstream 672825 16824815 ~ 16895188 (+)
si:dkey-40c11.2 LOC104955420,LOC104955419 coding upstream 904316 16628521 ~ 16663697 (+)
LOC120560529 LOC104929280,LOC106096593,LOC106456402,LOC105940769,LOC105925442,LOC104963572,LOC105354747 coding downstream 19240 17591945 ~ 17593975 (+)
si:ch211-130m23.3 ssbp2 coding downstream 68838 17641543 ~ 17704206 (+)
LOC120560622 LOC103357060,LOC104963569 coding downstream 137485 17710190 ~ 17712781 (+)
LOC120560621 LOC102798399,LOC107393894 coding downstream 140215 17712920 ~ 17715065 (+)
f2rl2 f2rl2,LOC104963555 coding downstream 160863 17733568 ~ 17735949 (+)
LOC120560616 NA non-coding upstream 23105 17536842 ~ 17544908 (+)
G62217 NA non-coding upstream 51916 17515654 ~ 17516097 (+)
G62214 NA non-coding upstream 74814 17492892 ~ 17493199 (+)
G62213 NA non-coding upstream 75284 17492390 ~ 17492729 (+)
G62204 NA non-coding upstream 152664 17414652 ~ 17415349 (+)
G62280 NA non-coding downstream 185150 17757855 ~ 17758057 (+)
G62294 NA non-coding downstream 240884 17813589 ~ 17813813 (+)
G62344 NA non-coding downstream 366322 17939027 ~ 17940846 (+)
G62372 NA non-coding downstream 482094 18054799 ~ 18056149 (+)
G62406 NA non-coding downstream 554831 18127536 ~ 18127745 (+)
LOC120560947 edil3 other upstream 153418 17285648 ~ 17414595 (+)
LOC120560897 LOC105925468 other upstream 1033838 16532916 ~ 16534175 (+)
LOC120560890 NA other upstream 1092108 16468310 ~ 16475905 (+)
fam172a fam172a,LOC102785942 other upstream 1468529 15943698 ~ 16099484 (+)
mctp1a mctp1,LOC102782783 other upstream 1790872 15636798 ~ 15777141 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other downstream 425981 17998686 ~ 18011030 (+)
thbs4a thbs4,LOC104953147,LOC106958346 other downstream 442700 18015405 ~ 18029386 (+)
setbp1 setbp1,LOC102781608 other downstream 502063 18074768 ~ 18129069 (+)
G62513 NA other downstream 758000 18330705 ~ 18331230 (+)
tbx5b tbx5,LOC103470367 other downstream 834643 18407348 ~ 18419590 (+)

Expression


Co-expression Network