thbs4a (thbs4,LOC104953147,LOC106958346)


Basic Information

Item Value
gene id thbs4a
gene name thbs4,LOC104953147,LOC106958346
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18015405 ~ 18029386 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU83519
CAGAGTCTCCACATAGCAACTCTGGGACTGTGGCTGTTAGAGTTTTCCATGTCCAGTCTATAGGAGAAACCGTGACTTTTGCCCCAGAAAACTTGGCATATGCCAGAACTATCAGAGATTCGGTGTGGACAGAAGGCAAACCCCAGTCTCCTCCCCAGCATCTCAGCTCCATGGCAGCCGCCATGTTTTGATCCGTGCAAGGAGCTGGTGACGTCACGAGGTACCTGTCATATCCTGGTCATATCAGAGCCTTCAGAGGGG
>XM_039803164.1
GCCATGTTTTGATCCGTGCAAGGAGCTGGTGACGTCACGAGGCTGTTAGTCAGACTATCGAAGGCTGCCAGATGTTTGGTCGGAGACCAGACAGCCAGACACAAACGGATCCCCGGTGATAATGCTCCGAGGGATGGTAAATGTCTGTCTTTGGCCCGGACCAGCAACTGAGATGTTGAAATGTGCTTGAGgaaAACAACTTCTGCTGAGGTGTCTCCCATACTGAAGCACTGGGTGATGGGTGTGTGGGCCAGAGCAGCGGCTCTGTCTCTGGTGCTGCAACAGCTGGTGCTCACTATCACAGCTCAAGGCATTATCTATGACCTGCTGGTGTCTCCAGACTGCCTGCCAGACTTGCTCCAAGGAAGCCTGAAGAACAAAGGGCGAGATGAggctttcctcctctcttccttcaGGCTCCAGAGCAAGGCCCCCACGTCTCTGTACAGTGTCATCAACCCCAAAGACAACACCAAGTACCTGGAGCTCAGCGTGCAGGCCAAACTAAGCAAGGTGACCATTCGTTTCCAGAAGACCGACGGTAGATTAGGCACAACCAGTTTCAACCACGCTTCCCTGGCAGATGGCCGAGATCACCATGTGATGCTACATGCCAGAGGTCTACAGGGCGGTCCACCTCGCCTCAACATCTATGTAGACTGCAGACTGGCACACACTTTGGATGATCTGCCGGCTGCGTTTGGTTCACTCCCCCCTGGTCCCAACAAGGTGGCCCTCAGGACCCTGCAGTCGAGTGGACAGGATGAACTGACAGACTTGAAACTGGTGATAGAGGACACCATAGATAATGTGGCGACTCTGCAGGACTGCAGCGTGGATCAACGTGAATCTCTGCAGCTGCTGAGTATCCAGGGAGGCAGCACGGCACACGACCAGGCCACCATGCAGGAGCTGAAGAGCATGTTATCTGAGATGAAGCAACTGCTCAACCAGCAGaTTAAGGAGACAACCTTTCTGAGGAATACCATTACAGAGTGTCTTGCCTGTGGTCTCGGGGGCAATCCAACCATCACAGGTCCAGCTCCAAGCCCTAGGCAGCCTCAGCCTCTGACGCAGTGCCCACCTGGCACCTGTTTCAGACAGAACATGTGCATCCCCTCAGAGTCAGGGGGTTTCCAGTGTGCCCCCTGTCCTGATGGATTTACAGGAGACGGGGTGCACTGTGACGACGTAGATGAAtGCCAGTTCAACCCATGTTACCCTGGTGTCCGGTGTGTGAACACTGCTCCTGGTTTTCGCTGTGAGAAATGCCCTGTGGGATACAGGGGACCAGAAATAAATGGAGTGGGAGTGTCCTATGCGAAGTCCCACAAACAGGTGTGTGACGATATAGATGAGTGTCTGGGCCCGCCTGAGAATGGAGGTTGCACTGCCAACTcacactgctacaacactatAGGCTCCTTCCGCTGCGGTGAGTGCAAAACTGGCTTCACAGGTGATCAAGTGAGAGGCTGCCATGGTACCAGGCTTTGCCCCAACGGTCAACCCAGCCCCTGCGACCCCAATGCCAATTgtgttgtggagagagatggcAGCATTAGCTGTGCGTGTGGCGTTGGTTGGGCAGGTAATGGCTATGTGTGTGGAAAGGACACAGATATTGACGCATATCCTGACAATAAGCTCCAGTGCAGAGACACCAACTGTGAGCAGGataactgtgtgtttgtgccaaACTCTGGCCAAGAGGATGCAGACAGGGACGGGATGGGTGACTCCTGTGATGATGATGCAGACAGCGATGGCATTATTAACATAGATgaCAACTGCTGGCTCGTTCCTAATGTGGACCAAAGGAACAGCGATAAGGATCTCCATGGCGATGCCTGTGACAACTGCAGAACAGTCGATAACCCCTTACAGAGGGATACCGATCAGGACGGGCTGGGAGATGAATGTGATGATGATATGGATGGGGACGGTTTGAAGAATATTCTTGACAACTGCCAGCGAGTCCCCAATGTAGACCAGAAAGACGGAGACAACGATGGGGTGGGAGATGCCTGTGACAGCTGTCCAGACATGGCCAATCCTAACCAGTCTGACTCAGATGATGACCTTGTAGGAGATAGCTGTGATGACAACATAGACAGTGATGGCGACGGACACCAGAACACAAAAGACAACTGTCCCACAATCATCAACTCCTCTCAGTTGGACACTGACAAGGATGGAATGGGAGATGAATGTGACGACGACGACGATAACGACGGAATACTGGACGATGATGACAACTGCAGACTAGTTCCCAACCCAGACCAAAAGGACACAGATAATAACAGAGTTGGAGACGCATGCGAAGGAGATTTTGACAAAGACAACGTCATCGACATAATCGACCACTGTCCAGAGAATGCTGAGGTCACCCTGACCGACTTCAGAGCCTATCAGACCGTAGTGCTGGATCCAGAGGGGGACTCTCAGATTGACCCCAACTGGGTGGTCCTCAATCAGGGCATGGAGATAGTTCAGACGATGAACTCTGACCCTGGCCTTGCTGTAGGCTACAAAGCGTTCAGTGGGGTTGACTTTGAGGGAACATTCCACGTGAACACAATGACGGACGATGACTATGCCGGCTTCATCTTCGGATACCAGGACTCCTCCTCCTTCTACGTGGTGATGTGGAAACAGACAGAACAAACCTACTGGCAGGCTGCACCCTTCAGAGCCGTCGCTGAGCCGGGAATACAACTCAAGGTTGTGAAGTCAAAGACAGGTCCGGGTGAGTATCTGAGGAACTCCCTCTGGCACACAGGACACACCCCTGATCAGGTCCGTCTCCTGTGGAAAGACCCGAGGAACGTTGGCTGGAAGGACAAGGTGTCCTACCGCTGGTTCCTCCAGCACAGACCACAGGTTGGATACATCAGGGCTCGCTTCTTTGAGGGTCCAAAGCTGGTGGCGGATACAGAGGTGATCATTGACACCAGTATGAGAGGCGGGAGACTGGGCGTGTTCTGCTTCTCTCAGGAAAATATCATCTGGTCCAATCTGAAGTACCGTTGCAACGACACTATTCCTGCTGACTACGAGGATCACCATGCCCAGAACACAGAGTGAAGCCAGAGGAGGGAAGTGATCCACCAAGGAAACAACTTGAGCCCTGCTGAAAACATGTATGTAAGGAGTAGAGCTGCAGATGAGAacaaagaggaagaggacatgagttagagaaagaaagatgaatGTAAGAGGGAACATGATCGACAGTTTTGGTGATGGTATTTTAACTTTGTCATTCAAATGAGAGGATTGGGCATTATACACTTTAATTATGTGTAACTGAAGCCAGTACATTTTTGTATAAATCAGCAGGTTCTGTGTACGTTTATGCAATATCTCAAATGCAATAATCAGCATTTTAGGAATACTGTTAAATATGCAATCATGTTTTGGAATATGTTGCAAGTACAATAAAATTCTGAgcatttaagaaaataaaa

Function

symbol description
thbs4 Enables calcium ion binding activity; heparin binding activity; and integrin binding activity. Involved in several processes, including endothelial cell-cell adhesion; myoblast migration; and positive regulation of neutrophil chemotaxis. Located in basement membrane and extracellular space.

NR:

description
thrombospondin-4-B-like

GO: NA

KEGG:

id description
K04659 THBS2S; thrombospondin 2/3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
TU83519 False 261 lncRNA 0.52 3 18015405 18017448
XM_039803164.1 True 3470 mRNA 0.51 25 18017367 18029386

Neighbor

gene id symbol gene type direction distance location
tent2 NA coding upstream 17024 17991866 ~ 17998381 (+)
LOC120560642 LOC103357080,LOC100694356,LOC102778564,LOC102192834 coding upstream 47918 17952081 ~ 17967487 (+)
LOC120560760 LOC104943387 coding upstream 65348 17945795 ~ 17950057 (+)
kif2a kif2a coding upstream 81977 17914936 ~ 17933428 (+)
LOC120560752 col4a3bp coding upstream 165380 17825047 ~ 17850025 (+)
slc14a2 slc14a1,LOC100693008,LOC103357096 coding downstream 104261 18133647 ~ 18139334 (+)
riok2 riok2 coding downstream 203342 18232728 ~ 18237999 (+)
LOC120560024 lix1 coding downstream 209922 18239308 ~ 18244773 (+)
epg5 epg5 coding downstream 216115 18245501 ~ 18268581 (+)
dnajb5 dnajb5,LOC102783367 coding downstream 241333 18270719 ~ 18280112 (+)
G62344 NA non-coding upstream 74559 17939027 ~ 17940846 (+)
G62294 NA non-coding upstream 201592 17813589 ~ 17813813 (+)
G62280 NA non-coding upstream 257348 17757855 ~ 17758057 (+)
LOC120560616 NA non-coding upstream 470497 17536842 ~ 17544908 (+)
G62217 NA non-coding upstream 499308 17515654 ~ 17516097 (+)
G62372 NA non-coding downstream 25413 18054799 ~ 18056149 (+)
G62406 NA non-coding downstream 98150 18127536 ~ 18127745 (+)
G62484 vcp,LOC102783844,LOC103357444,LOC107746855,LOC107393925 non-coding downstream 263874 18293260 ~ 18296903 (+)
G62502 thoc5 non-coding downstream 283825 18313211 ~ 18314777 (+)
G62508 NA non-coding downstream 291257 18320643 ~ 18321158 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other upstream 4375 17998686 ~ 18011030 (+)
tmem167a tmem167a,LOC103397084 other upstream 442700 17568013 ~ 17572705 (+)
LOC120560947 edil3 other upstream 600810 17285648 ~ 17414595 (+)
LOC120560897 LOC105925468 other upstream 1481230 16532916 ~ 16534175 (+)
LOC120560890 NA other upstream 1539500 16468310 ~ 16475905 (+)
setbp1 setbp1,LOC102781608 other downstream 45382 18074768 ~ 18129069 (+)
G62513 NA other downstream 301319 18330705 ~ 18331230 (+)
tbx5b tbx5,LOC103470367 other downstream 377962 18407348 ~ 18419590 (+)
tpcn1 tpcn1 other downstream 411961 18441347 ~ 18474731 (+)
acacb acacb other downstream 631771 18661157 ~ 18685463 (+)

Expression


Co-expression Network