G62484 (vcp,LOC102783844,LOC103357444,LOC107746855,LOC107393925)


Basic Information

Item Value
gene id G62484
gene name vcp,LOC102783844,LOC103357444,LOC107746855,LOC107393925
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18293260 ~ 18296903 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU83666
CCTCTCTCCTGATTGGCTCTCCCTCACAGTGGATGACTGTATCAGGAGCAACAATGCAGTAGGGAGAGGGGTCAGTCTCTACCACCTTGAACTCCACAGCACGCATGCCTCCTCTGACCAGGAAAATATCACCTTGCGAATTGGCCTGTAAGCCTCCAGAAAGTATGGCTTCAGGTAGACCTCAAACAGGTTGCCAGTAATTCCTTCTACTGTGTCATCTATTGGGAGGACGTGGATCCTCTTTCCATACTTCACATCAGGACATGGCTGAATGCTGATGACATCACCCAGTCTGACCCTCAGATTGTTGCGGACCACCCTGTTCATGCGAACCTTTTCATCAGAACAGGTGTCGTCAGACAGCACAATGCACACAGTCTCCCGCCTCTTCTTTCCTTTCATCAGCACTGTGTCTCCACGGAAGAGCTGCAGCTCGTCCATCTTGGTCTGAGATAGAGAGACCACACTGTTGTCTTCATTGATGGATTCATCAACAATCAGTCTGTTGGGTCTGCTCTTCTGTTTCAGAATTGCAGTGGCTAGATCATCATTTTTGGATTCCCCTCCCGAGGCCATGGTTGTCCACCTGGAttacttttaataaataaagaaattctAGCTAAATGTTTAAGAGGCTTAACCGGTTCTCGTTACTCGACGTTCTCTGTGATTTCACACGAAAGACCAGCCGTTTCCGTGCTTTCCTTTTACAATTATACCAAGAGCTGGACGCATCTGgcattctgattggctggaggCTGTCCATCAGAATGGGTAACCAATGAAATAATGTCGAGTCTGACGTCACCAAGAATATTGTTGAAACTTGGCCAGTTACAAATGAGTGGGATGTTCCTATTTTTACCAACCATTCTCTTATTGGTCATTTATGCCTGTCGCCAAACTTCTGAC
>TU83667
CCTCTCTCCTGATTGGCTCTCCCTCACAGTGGATGACTGTATCAGGAGCAACAATGCAGTAGGGAGAGGGGTCAGTCTCTACCACCTTGAACTCCACAGCACGCATGCCTCCTCTGACCAGGAAAATATCACCTTTGCGAATTGGCCTGTAAGCCTCCAGAAAGTATGGCTTCAGGTAGACCTCAAACAGGTTGCCAGTAATTCCTTCTACTGTGTCATCTATTGGGAGGACGTGGATCCTCTTTCCATACTTCACATCAGGACATGGCTGAATGCTGATGACATCACCCAGTCTGACCCTCAGATTGTTGCGGACCACCCTGTTCATGCGAACCTTTTCATCAGAACAGGTGTCGTCAGACAGCACAATGCACACAGTCTCCCGCCTCTTCTTTCCTTTCATCAGCACTGTGTCTCCACGGAAGAGCTGCAGCTCGTCCATCTTGGTCTGAGATAGAGAGACCACACTGTTGTCTTCATTGATGGATTCATCAACAATCAGTCTGTTGGGTCTGCTCTTCTGTTTCAGAATTGCAGTGGCTAGATCATCATTTTTGGATCTATGCAAAGAAGCAGATACAACATTGTAGGTCAAAAGAAAATACCTCTTATTGTGCACCATCAAGGTCTCATGCAGATCCTACAATAATAAAGCTGCTCAAGTTAGTAAGTAATTGTGTAATAGAAATATCTGTACAGGCAACCATCAACATCTCACTATTCCACATCAAATTAATGTTAGGTTTGGTGACTTCATTAAATCTGTCCATGTTAAACCAGGCCCCTAAAGTGCTCTGTGAAACTTCTCAGAGTTTCTAGTCTGGTTTGTCTATGGGGAATTGGAAAACACCATTTGGTGAAACATCCCTTGCAGGAGAGCTTTCTGTGTTCAGGGGGTCAATATGGTTGACTCCAGACCTACAGAGCTCTAAATTGATCATTACTTGTATCATATTAAAACCAAGATCAAACAGTGTGAAGAGAAATCCGGTATACTGAGTATTCAAGCATGATTGACTATTGGTTGGGTTTTGTATTGGTAGTTAAAGTATTTTTACCTCATTGTCTCGGTCCTCTTTTGAAAACTTATGATAATGGATATTAGCCATTAGTCATAGGAACCTAATATTCTGTTCTTATGTCCATGGATTATCAATGACAGTAACTAAGAATGCTGTAAAATTTTGATTATGAATTGTCTTTTGATAACCAGATGACAAATTGTGCAGTCCTGCTTCGCCCAATTTAGACATCTAGGCAAGATCAGGTCATTTCTTTCCTTTGCAAACTTAGAAAAGCATCTGGTATCATCTGGTGAAACATCTGAAGACTGCAGTTGATACAAAACGCTGCTGCTGGGCTTTTAACTCGCACTAAGAagtgatcacattacacaaatcATTGCTGCCTTTCACTGATTATCTGTAAGttttagaattgattttaaTGCTCGTTTTTAGCCTTGAATGGTTTGGCTCCTGCCTATGTGATGTTTTAATTCCCCATGAGACTGATTGCTGCTTGAGATCCTCTCGCACTTGAATACAAAAGTCACAAGGCTTTTGCTGTACCCCAGGACCCTCACCTGTGGAACTCAATGTCAGAGGATCTCAGGCTGGCGAACTCCGTATCCCTTTAATTAAACCTTTAAATCTCTTGCTATGATT

Function

symbol description
vcp Predicted to enable ATP hydrolysis activity and polyubiquitin modification-dependent protein binding activity. Acts upstream of or within chordate embryonic development; locomotory behavior; and regulation of cellular catabolic process. Predicted to be located in cytoplasm and site of double-strand break. Predicted to be part of VCP-NPL4-UFD1 AAA ATPase complex. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including brain; digestive system; eye; fin bud; and trunk musculature. Human ortholog(s) of this gene implicated in several diseases, including Charcot-Marie-Tooth disease type 2Y; Paget's disease of bone; amyotrophic lateral sclerosis type 14; inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 1; and inclusion body myositis. Orthologous to human VCP (valosin containing protein).

NR:

description
PREDICTED: transitional endoplasmic reticulum ATPase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83666 False 912 lncRNA 0.47 5 18293260 18296903
TU83667 True 1667 lncRNA 0.42 4 18293260 18295306

Neighbor

gene id symbol gene type direction distance location
akr1a1a LOC103357443,LOC100534433 coding upstream 5978 18282370 ~ 18287282 (+)
dnajb5 dnajb5,LOC102783367 coding upstream 13148 18270719 ~ 18280112 (+)
epg5 epg5 coding upstream 24679 18245501 ~ 18268581 (+)
LOC120560024 lix1 coding upstream 48487 18239308 ~ 18244773 (+)
riok2 riok2 coding upstream 55261 18232728 ~ 18237999 (+)
LOC120560506 nefh,LOC102784691 coding downstream 9995 18306898 ~ 18311633 (+)
srrd srrd coding downstream 30061 18326964 ~ 18328537 (+)
ddhd2 ddhd2 coding downstream 48651 18345554 ~ 18357632 (+)
LOC120560725 NA coding downstream 68842 18365745 ~ 18382595 (+)
si:ch211-113d22.2 LOC106098714,LOC103357453,LOC102788116 coding downstream 86046 18382949 ~ 18386253 (+)
G62406 NA non-coding upstream 165515 18127536 ~ 18127745 (+)
G62372 NA non-coding upstream 237111 18054799 ~ 18056149 (+)
G62344 NA non-coding upstream 352414 17939027 ~ 17940846 (+)
G62294 NA non-coding upstream 479447 17813589 ~ 17813813 (+)
G62280 NA non-coding upstream 535203 17757855 ~ 17758057 (+)
G62502 thoc5 non-coding downstream 16308 18313211 ~ 18314777 (+)
G62508 NA non-coding downstream 23740 18320643 ~ 18321158 (+)
G62533 NA non-coding downstream 68377 18365280 ~ 18388485 (+)
G62540 NA non-coding downstream 160595 18457498 ~ 18459249 (+)
G62557 NA non-coding downstream 201060 18497963 ~ 18498301 (+)
setbp1 setbp1,LOC102781608 other upstream 164191 18074768 ~ 18129069 (+)
thbs4a thbs4,LOC104953147,LOC106958346 other upstream 263874 18015405 ~ 18029386 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other upstream 282230 17998686 ~ 18011030 (+)
tmem167a tmem167a,LOC103397084 other upstream 720555 17568013 ~ 17572705 (+)
LOC120560947 edil3 other upstream 878665 17285648 ~ 17414595 (+)
G62513 NA other downstream 33802 18330705 ~ 18331230 (+)
tbx5b tbx5,LOC103470367 other downstream 110445 18407348 ~ 18419590 (+)
tpcn1 tpcn1 other downstream 144444 18441347 ~ 18474731 (+)
acacb acacb other downstream 364254 18661157 ~ 18685463 (+)
mvk mvk,LOC102798305 other downstream 440615 18737518 ~ 18742399 (+)

Expression


Co-expression Network