Gene
RNA
| Item | Value |
|---|---|
| gene id | G62502 |
| gene name | thoc5 |
| gene type | non-coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053117.1 |
| NCBI id | CM020914.1 |
| chromosome length | 43979800 |
| location | 18313211 ~ 18314777 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| thoc5 | Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus and positive regulation of DNA-templated transcription, elongation. Predicted to act upstream of or within RNA processing; cell differentiation; and mRNA transport. Predicted to be located in cytoplasm and nuclear speck. Predicted to be part of THO complex part of transcription export complex. Human ortholog(s) of this gene implicated in breast carcinoma. Orthologous to human THOC5 (THO complex 5). |
| description |
|---|
| PREDICTED: THO complex subunit 5 homolog |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU83688 | True | 1447 | lncRNA | 0.45 | 2 | 18313211 | 18314777 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC120560506 | nefh,LOC102784691 | coding | upstream | 1578 | 18306898 ~ 18311633 (+) |
| akr1a1a | LOC103357443,LOC100534433 | coding | upstream | 25929 | 18282370 ~ 18287282 (+) |
| dnajb5 | dnajb5,LOC102783367 | coding | upstream | 33099 | 18270719 ~ 18280112 (+) |
| epg5 | epg5 | coding | upstream | 44630 | 18245501 ~ 18268581 (+) |
| LOC120560024 | lix1 | coding | upstream | 68438 | 18239308 ~ 18244773 (+) |
| srrd | srrd | coding | downstream | 12187 | 18326964 ~ 18328537 (+) |
| ddhd2 | ddhd2 | coding | downstream | 30777 | 18345554 ~ 18357632 (+) |
| LOC120560725 | NA | coding | downstream | 50968 | 18365745 ~ 18382595 (+) |
| si:ch211-113d22.2 | LOC106098714,LOC103357453,LOC102788116 | coding | downstream | 68172 | 18382949 ~ 18386253 (+) |
| si:ch211-204d2.4 | plekha2 | coding | downstream | 74334 | 18389111 ~ 18400741 (+) |
| G62484 | vcp,LOC102783844,LOC103357444,LOC107746855,LOC107393925 | non-coding | upstream | 16308 | 18293260 ~ 18296903 (+) |
| G62406 | NA | non-coding | upstream | 185466 | 18127536 ~ 18127745 (+) |
| G62372 | NA | non-coding | upstream | 257062 | 18054799 ~ 18056149 (+) |
| G62344 | NA | non-coding | upstream | 372365 | 17939027 ~ 17940846 (+) |
| G62294 | NA | non-coding | upstream | 499398 | 17813589 ~ 17813813 (+) |
| G62508 | NA | non-coding | downstream | 5866 | 18320643 ~ 18321158 (+) |
| G62533 | NA | non-coding | downstream | 50503 | 18365280 ~ 18388485 (+) |
| G62540 | NA | non-coding | downstream | 142721 | 18457498 ~ 18459249 (+) |
| G62557 | NA | non-coding | downstream | 183186 | 18497963 ~ 18498301 (+) |
| G62558 | NA | non-coding | downstream | 183853 | 18498630 ~ 18498972 (+) |
| setbp1 | setbp1,LOC102781608 | other | upstream | 184142 | 18074768 ~ 18129069 (+) |
| thbs4a | thbs4,LOC104953147,LOC106958346 | other | upstream | 283825 | 18015405 ~ 18029386 (+) |
| cmya5 | cmya5,LOC106958347,LOC104953151 | other | upstream | 302181 | 17998686 ~ 18011030 (+) |
| tmem167a | tmem167a,LOC103397084 | other | upstream | 740506 | 17568013 ~ 17572705 (+) |
| LOC120560947 | edil3 | other | upstream | 898616 | 17285648 ~ 17414595 (+) |
| G62513 | NA | other | downstream | 15928 | 18330705 ~ 18331230 (+) |
| tbx5b | tbx5,LOC103470367 | other | downstream | 92571 | 18407348 ~ 18419590 (+) |
| tpcn1 | tpcn1 | other | downstream | 126570 | 18441347 ~ 18474731 (+) |
| acacb | acacb | other | downstream | 346380 | 18661157 ~ 18685463 (+) |
| mvk | mvk,LOC102798305 | other | downstream | 422741 | 18737518 ~ 18742399 (+) |
