tpcn1 (tpcn1)


Basic Information

Item Value
gene id tpcn1
gene name tpcn1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18441347 ~ 18474731 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU83734
TTGTTGATCCAGCTGTAACGTTATCTGTAGAGCCTTTGTAGTATTGTTAATAACAGATATTTTTGCTTGTGGAAAAATGTATCTAGATTTAGAATTGGTGTACGTATCGGTTAAATGTTATCAGAACAAGCACAACATCTGTTATCCAGCAGAAAGCCTTGTTTGTGTTAATGATGCCGTGATGGACACAGACAGTCTCAGCTTGTTAGTCTGAGTGACAGTGAACCAGTTGATTCGGTGACAGATACTAACAGGACGAAGACCAAATTTGCAACCAAGTTCCTTCGCTAGTTCCTGTTTTGCAGTATTTAGCTGTCATCTGAGTTAGCACAGCCTAACAAGTACTCGGTTTTAGCGTTAGCTGCGAGCATCCATGATGTGCAGTTGTCTTGCAGTCTGCGGAACAAACCGCGCACTTATTTAGCTAGTGGGTAGCTAAGATTAACTAttattgaacattataactcaagGCTGTGCAGCCTGTTTATCTGCTAATATGGAGTCTGACGACGATGTGCCTCTCATCTTAACCTGGGACGAAGCCAACCACGGTCTGCTCAACgaggagactgagagaggaGGCGAAAGTGGAGGAGGCTTTGCTGCACCTCTGGACTTTGATGGTTCGACTTTGGGTGGTGGTGGCGGAGGGGCAGGAGTTCGTGTAGGGCGCAGAGAAGCTGCACGGGATGGAGGGGGGCTTTTTAAGTGAGCTGGGAGCGGTGGGGAGCGGGGCCGTGTTATGGACCTTTCAGAAGACCTAG
>XM_039803228.1
TCAGTGTCGCAAATGTTGTTGATCCAGCTGTAACGTTATCTGTAGAGCCTTTGTAGTATTGTTAATAACAGATATTTTTGCTTGTGGAAAAATGTATCTAGATTTAGAATTGGTGTACGTATCGGTTAAATGTTATCAGAACAAGCACAACATCTGTTATCCAGCAGAAAGCCTTGTTTGTGTTAATGATGCCGTGATGGACACAGACAGTCTCAGCTTGTTAGTCTGAGTGACAGTGAACCAGTTGATTCGGTGACAGATACTAACAGGACGAAGACCAAATTTGCAACCAAGTTCCTTCGCTAGTTCCTGTTTTGCAGTATTTAGCTGTCATCTGAGTTAGCACAGCCTAACAAGTACTCGGTTTTAGCGTTAGCTGCGAGCATCCATGATGTGCAGTTGTCTTGCAGTCTGCGGAACAAACCGCGCACTTATTTAGCTAGTGGGTAGCTAAGATTAACTAttattgaacattataactcaagGCTGTGCAGCCTGTTTATCTGCTAATATGGAGTCTGACGACGATGTGCCTCTCATCTTAACCTGGGACGAAGCCAACCACGGTCTGCTCAACgaggagactgagagaggaGGCGAAAATGAAGAAGGAGGCAATTATGACATAGTGAACAACGCTGTGATCTCAACACCTGGGCCACAAATCCACAGAGCCCAAAACGTGTCCTTACGGCAAAGCTGGGAGATGAACTACCAAGAAGCAGCCATCTACCTGCAGGAGGGAGAGAACAATGATAAGTTCTTCACCCATCCTCGAAACCCAAAAGCGCTGGCAGCGTACCTGTTTGCTCACAACCACCTGTTCTACATGATGGAGCTTCTGACAGGCCTGCTGCTGATGATGCTGTCACTGTGTGAAGCTCCAGCTGTGCCCTCACTGCGCCTGGATGTCTACGTCCATGCCACTCTGGAGCTGCTGGCTTTGGTTATTGTGGCATTTGAGCTATGCATGAAACTCCGCTGGTTAGGCTTCCACACCTTCATACGACACAAGAGGACCATGGTGAAGatgtgtgtgttgctgctaCAGTTCGTGGAGGCCATAGTGGTTCTAATCAGACAGACGTCTCACATGAGAGTGACCAGAGCTCTCAGACCAATTTTCCTGGTGGACTGTAGATACTGCGGTGCCGTGCGCAGAAACTTGCGTCAGATCTTCCAGTCCCTCCCACCTTTTATTGACATCCTCCTACTGCTGCTCTTCTTCATGGTTATATTTGCTATGTTGGGTTTCTGCCTCTTCTCGCCAAACACTGTTGACCCGTACTTCAGCACTCTGGAGAACAGCCTTGTCAGTCTGTTTGTGCTGCTGACCACAGCAAATTTCCCTGATGTGATGATGCCATCGTACTCAAAGAACCGATGGTCCTGTGTTTTCTTCATTGTTTACCTCTCCATAGAGCTCTACTTCATCATGAACCTGctcttgGCAGTGGTGTTTGATACGTTTAATGACGTTGAGAAGATGAAGTTTAAATCTCTTTTACTCCACAAACGCTCCGCTATTGACCATGCCTTTCAGCTGTTAGTTAGCCGGCAGAGGCCGATGGGTGTGTCGCTGAAACAGTTTGATGGTCTGATGCGATTTTACAGACCACGGATGTCTGCAAGAGACCGCTTCCTCACATATAAAGCTCTTAACACCTCAGGGGCTCCTATGCTCAGTCTACAGGACTTTTATAAGTTCTATCAGGTGACTGGCCTTAAATGGAAGgcACGACGCAGTGGAGAACATTGGTTTGACGACCTTCCACACACAACCTTCCTCATTTTCAAAGGCATTAACCTGCTTGTGAAGTCAAAGGCCTTCCAATATGCAATGTATGTGGTGGTGGCCATCAATGGCGTGTGGATCCTCGTGGAGACGTACACGCTCAACAGTGGAATTTCATGGTCCAGATTTGTTCCCTGGAGTTACATTGTCTTTCTGACCATTTATGGTGTTGAGGTGTTATTGAAAATATCTGGTTTGGGGCCAATGGCTTATTTCAGCTCTGGGTGGAATCTGTTTGACTTTTCAGTGACAGTGTTTGCCTTCCTGGGCCTGACTGCTCTTGCCTTCGATATGGAGCCGTTTTACTTCATCGTAGTTCTCAGACCACTTCAGCTGCTCCGGTTGTTTAAGATAAAGCAGAGGTATCGTAATGTGTTGGACACCATGTTTGAGCTCTTCCCCAGGATGGCAAGTCTGGGGTTGACCTTAATCATCTTCTACTACTCATTTGCCATTGTTGGGATGGAGTTCTTTGCAGAGGTGGTTTACCCCAACTGCTGCAAcACCAGCACAGTGGCAGACTCCTACAGACAGATCAATGTCACCTATGGCAACAAAACAGTGTTGGAAGAAGGCTACTATTATCTCAATAACTTCAACAACATCCTCAGCAGCTTTGtGACTCTGTTTGAACTGACTGTAGTCAATAACTGGTACATTACCATGGAAGGAGTCACTTCTATGACAACCCACTGGAGCCGGCTCTACTTCATGACATTTTACATAGTTACCATGgtggtgATGACCATCATCGTGGCGTTCATTCTGGATGCATTTGTGTTCCGCATGAACTACAGCCGCAAGAACCGGGAACCAGTGGAGAACCCAGAGGATGAGAACGGGATAGTTTTTGAAGTAGAGGTGAGTCGTGATGAGGCTCTGTCCACTCTGGAGCTGTACAAACAGACTTGCCCAGGACTGTCCTCCCTCAGCTCTCTACAGGGAGTCCTACAAACTATGGACAGGGGAGGGCACTCGTCTCTGGTGTACCTAGGTCGCAGGTCTAGGACGAAGAGTGACCTCAGCATGAAAATGTACGAGGAGGAGATACAGCACGAGTGGTATGCAGAGTATTCAAGGGAAAACCTGCCTGAGCAAGACCAAAGCCTGGAGCGGGAGCTGGACAGTCCCGTCTCTGACCCATCTCCCTTCCCAGAGCCTCAGCTCAACGCACAGACTGGACCTCACGGGGTCAACTAATGCAGTTTAAAAGCAGTACATACACCACCATCAACATCTCAGCATTTTTAAATGCAAAGAAAACCCCCATCACTCCAGCTCTTCTCCAGTTTCCCCACGCTCACCGTTTGCCACAGTGGGAAACTAGTCCGGGGCCTCCTTTTGGACTGATGTGAGAGTGAGACGAGTTAAAGATGACTCCTTCTCAGAGCCGTCactacagacagaaagacagcagTGCAGGTCTGTTGCTCAACCAGTGAGGTGGGAGCGTCGCCCTCTTTTGGCCTTTTCAAAGACTCCAGCAAATATTACCAGCGAACCCGTACTACTACAGTATGTCGTGTACGTATACTGCTGTAGGACTTTTGTGACCTCTTGTAAATCATGTAGTACTTAAACCTGATGCCTTAGTTAAATGGCTCATCTGATCCGTATTACCGCAGACACTACATCTAAGTTCTCTAAAGACCCAAACACTTACGCTCCTTTCAGCTCAACCCAACGGTGTATCTCCTAACTAATGTCTCAACAGACTCAAAGTATTAAACTTTTATATAGCTTCTTCTTATTCTGTGATGTATTTGAGTTAGCTAAGAAGGAATTTTAATAAACTGCTCGAATTGTCAA

Function

symbol description
tpcn1 Predicted to enable NAADP-sensitive calcium-release channel activity. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endosome membrane and lysosomal membrane. Orthologous to human TPCN1 (two pore segment channel 1).

NR:

description
two pore calcium channel protein 1

GO: NA

KEGG:

id description
K16896 TPCN1; two pore calcium channel protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU83734 False 764 lncRNA 0.47 2 18441362 18474731
XM_039803228.1 True 3604 mRNA 0.47 27 18441347 18455076

Neighbor

gene id symbol gene type direction distance location
cfap73 NA coding upstream 4157 18432817 ~ 18437190 (+)
si:ch211-204d2.4 plekha2 coding upstream 40606 18389111 ~ 18400741 (+)
si:ch211-113d22.2 LOC106098714,LOC103357453,LOC102788116 coding upstream 55094 18382949 ~ 18386253 (+)
LOC120560725 NA coding upstream 58752 18365745 ~ 18382595 (+)
ddhd2 ddhd2 coding upstream 83715 18345554 ~ 18357632 (+)
si:dkey-98f17.5 LOC103357465,LOC102303189,LOC102202618,LOC102793122,LOC101475617 coding downstream 100257 18574988 ~ 18587715 (+)
p2rx2 p2rx2 coding downstream 162963 18637694 ~ 18642437 (+)
myo1ha myo1h,LOC104945027,LOC102796924 coding downstream 229401 18704132 ~ 18715310 (+)
ube3b ube3b coding downstream 246003 18720734 ~ 18729940 (+)
aldh3b2 LOC103470338,LOC103357480,LOC106944551,LOC103142889,LOC106918406,LOC107097252,LOC101157544,LOC100709454,LOC102306236,LOC104945033,LOC105926931,LOC108234466 coding downstream 255485 18730216 ~ 18736475 (+)
G62533 NA non-coding upstream 52862 18365280 ~ 18388485 (+)
G62508 NA non-coding upstream 120189 18320643 ~ 18321158 (+)
G62502 thoc5 non-coding upstream 126570 18313211 ~ 18314777 (+)
G62484 vcp,LOC102783844,LOC103357444,LOC107746855,LOC107393925 non-coding upstream 144444 18293260 ~ 18296903 (+)
G62406 NA non-coding upstream 313602 18127536 ~ 18127745 (+)
G62557 NA non-coding downstream 23232 18497963 ~ 18498301 (+)
G62558 NA non-coding downstream 23899 18498630 ~ 18498972 (+)
G62532 NA non-coding downstream 25147 18499878 ~ 18500121 (+)
G62559 NA non-coding downstream 25394 18500125 ~ 18500506 (+)
G62560 NA non-coding downstream 27031 18501762 ~ 18502375 (+)
tbx5b tbx5,LOC103470367 other upstream 21757 18407348 ~ 18419590 (+)
G62513 NA other upstream 110117 18330705 ~ 18331230 (+)
setbp1 setbp1,LOC102781608 other upstream 312278 18074768 ~ 18129069 (+)
thbs4a thbs4,LOC104953147,LOC106958346 other upstream 411961 18015405 ~ 18029386 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other upstream 430317 17998686 ~ 18011030 (+)
acacb acacb other downstream 186426 18661157 ~ 18685463 (+)
mvk mvk,LOC102798305 other downstream 262787 18737518 ~ 18742399 (+)
tmem119a LOC103353570,LOC104946818 other downstream 601830 19076561 ~ 19081654 (+)
rasl10a rasl10a other downstream 955670 19430401 ~ 19448950 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other downstream 1284865 19759596 ~ 19763524 (+)

Expression


Co-expression Network