tbx5b (tbx5,LOC103470367)


Basic Information

Item Value
gene id tbx5b
gene name tbx5,LOC103470367
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18407348 ~ 18419590 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU83742
CTGATGAGTTGGGTTCAGATCAGGGCTGCCGCTGAGTCCGCGAGGGCAATGTAGAGAGGAGCGATATTATGAAGAAGAGATTACATCCGTTTTGAACGGATCTCAGCCTCTGCAGTTGGCGGTGACGGGGAGGCAGCGGAGCGGACAAGCCGCGGTCTGCGCGCAGGGAGGCGGACAGCGGAGCGAGAAACAACCCGATGATATTTCGGAGCTGCACCGGGAATATGGTGGATTTTTGAGAATCGAAACCGCAACATTTGgacagttgattttttttttttaataatctggTGGAAATCCaagcaagcaaaaaaaaaaaaacacgagcaGGCTGCAGAGCGCGCAGGAGCAGGATGAGCGTGTTTTGTGCATGGAGAGCAGAGCAGTGCATTTGAGtgggaCATGGCAAACGGAGGGGACCAGTTCGGCCTTGCAGAGCGTCCGGACTCTGACTGCATGGATTCCCCAAAAGAGACCAAACAGGAACATCCCAGCTACACATTAAACTCACCAGTTTCCCCGCAGACAGCGTCCAGCCAGCAGGGGATGGAGGGAATCAAAGTTTTCCTCCACGACAGAGAACTTTGGACCAAGTTTGATGAAGTGGGAACAGAAATGATCATCACCAAGGCTGGGAGGAGGATGTTCCCCAGTTACAAGGTGAAGGTTACAGGACTCAACCCAAAAACCAAGTACATACTCCTGATGGACATTGTGCCCGGGGACGACCACCGCTACAAATTTGCAGACAACAAATGGTCGGTAACGGGGAAGGCAGAGCCCGCGATGCCCGGGAGGCTCTACGTCCATCCGGACTCTCCCGCCACCGGGGCTCACTGGAGCCGCCAGCTCATCTCCTTTCAGAAGCTCAAACTCACCAACAACCACCTGGACCCCTTCGGACATATAATACTCAACTCCATGCACAAATACCAGCCTCGCCTCCATATTGTCAAGGCGGACGAGAACAACGGCTTTGGCTCAAAAAACACCGCTTTCTGCACCCACGTCTTCCCTGAGACGGCCTTCATTGCTGTGACGTCCTACCAGAACCACAAGATTACACAGCTGAAGATAGAGAATAATCCTTTTGCTAAGGGCTTCAGAGGCAGCGACGACAATGAGCTGCACCGCATGGCCAAGCTACAAGGTAAGGACTACCCTGTGGTCCCTCGCAGTACTGTCCGTCAGAGAGCCTGCTCCACCGGGAGTCCCTTCAGTGGGGGGCG
>TU83744
CCACCTGCAGCACGGCCAACAGCCACAAGTCTACCACTGCACCAAGAGGAAAGtGGAGGAGAACTGCTCTTCAGGAAACCACCAGCACCCGTACAAGAAACCCTTCACCAGTAGCTCTCCAAGTGAGGGCGAGTCTTACTATCACCCCTCCTCCTATCCTCCCCCTCCACCTGGTCTGTCCGACATCCCACTCACTGACTCCCCCTACAGCTCAGACATGGTGCAGCGTCAGGCGTGCATGTTTGCCAGCTCTGAGCCCAGACTGGATGAACTCAACTGTACATCCTGGTCATACACCTGCCCACTCCCCTCTGCCATGACCCCCATGAAACCCTATCCACCTTACACCCCTCATCCTCCCTACAGCTCCAGCCCTCAGGGCTCTCGACTCAGCGCTATAGCCCACCAGAACTCTCCGCCGCTGGGAGAACACATCGACTACGACCCCTATCAGAGCCAGAGCTCTGGACCTCCATCCCAAAGCTCCCAAAACATTCAAAGCAGGCAGCTCAGCTCTCCGCTCAGAGAGTATCCTCGCTACACGCGCAACTTGTCTCCTCCTCTCTACCACACCctagagacgcacacacacatcaggtGTGGCGTCCCAGAATGGAGTGCAGCCTCCTAACTGAACCAGAGGACATACCCGAAAGAGAGATTCCTCGTCTCAAATTCAGTGACCCTTCTTTCTGCACTTCTGAAAGATGCTGCGCCATATACGGACTAAATATGATTTTAACTTtgtaaaataattgttaaaagTGTGATTTTTATGCTGTGTGAAGAGGTCTCATTTGTTCCTCGTGTTGCTCCCCTGTGCTGGATGGAGCAGTGGATTGTTAAAAACTGTACTTGGACATCCATGAAGCgtcagaaaaaaagagtctgaGCAGCACAATCAAAGTTGTACCTTATCACCTTTCCATAACCCAAAGACTGGTATCATCCAACTGTCTGCACTGTGAGCCCTGTTAAGGCCAGGCCGTGAACAGCACTAGGCTGTTTTCCTCTCAATGAATCCCACATTCTTCATTGTGAACAATGTAAATTGTGACACACTGTCAGACAGGCAGTAATATTTACTGACCAAAATAATCTCAGCTCTCACAGCAGCCTGagggaaactttttttttctaaagtggAGCAAAGCACAGCTCCATGCTCAGTCTCAGTGAAGGAGAAAAGgcatgagtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataaagtcTATGTCGGCTCAGCTCAAGGATACTATGAGTGCATTTTCAATGAGACAGCCAGTAGTAGCTGCAGGCACTGCACCATAGAAATAAACAGTTTGTTTAGACCATGCTACAGGCTGAAGGACCTGTAAACACGGCTTCCACTGCATTCTGGGTAAATGCACAACTCAGCGTCACACAGCTGCCACCGCTGTCCTCTCAGTCACccccagctgaccaatcagctttCTCCTTGCACTGAGAGCCAGCCAATGAACATGCACCTCTCTTTTATCCCCAGCTGACCATTCAGAGCTGGAGCgcagcatgtgtcatgtgtgcgtgtgtgtgttggcccatttttgtttgtttcagaaTTATTCATGCATCCAGTGGTGATCCTTGACATGCAAGGATTGCTCAGCAAATATAAAGAATCACAGTGCTGTAAACGTGATAATATTGATGCACCAACTCGTTAAAATATCTTTTTGGTCTCTTTATTTTGAATCTAAATGCTCCTTGTCAGGTCCAAACAGCATTTCTCCATTAATCACTGACAAGATTGTGTTAAATACATTTCCCTGCAGATTTGGGTCGCATGACTTTCCTCCTTTTAGCTAACTGTAAAGAAAGATGTTTGGCACTTACTGTGCAAGCTGAGATTTTGGTTGATTGTAGTGTAATGAATCAGTATTTATATTTCTGCCCAGGTGTTTTACATGCAGTAATGTGAGAAGGTGctctaacaaaaacaaaccatcAGTATGTAAAGAGGAAATCCTCATCATTCCTTGATATGTatttgatttgtgtgtgtgagtatgtgtgtgtgttccgagattttttttttttatagc
>XM_039804356.1
GTGTCTGAGGCGGACTTGACTCCATTTGTAATGAAAGATCTGATGAGTTGGGTTCAGATCAGGGCTGCCGCTGAGTCCGCGAGGGCAATGTAGAGAGGAGCGATATTATGAAGAAGAGATTACATCCGTTTTGAACGGATCTCAGCCTCTGCAGTTGGCGGTGACGGGGAGGCAGCGGAGCGGACAAGCCGCGGTCTGCGCGCAGGGAGGCGGACAGCGGAGCGAGAAACAACCCGATGATATTTCGGAGCTGCACCGGGAATATGGTGGATTTTTGAGAATCGAAACCGCAACATTTGgacagttgattttttttttttaataatctggTGGAAATCCaagcaagcaaaaaaaaaaaaacacgagcaGGCTGCAGAGCGCGCAGGAGCAGGATGAGCGTGTTTTGTGCATGGAGAGCAGAGCAGTGCATTTGAGtgggaCATGGCAAACGGAGGGGACCAGTTCGGCCTTGCAGAGCGTCCGGACTCTGACTGCATGGATTCCCCAAAAGAGACCAAACAGGAACATCCCAGCTACACATTAAACTCACCAGTTTCCCCGCAGACAGCGTCCAGCCAGCAGGTATCAGCCTGTACTACGGATCAGAATGGGATGGAGGGAATCAAAGTTTTCCTCCACGACAGAGAACTTTGGACCAAGTTTGATGAAGTGGGAACAGAAATGATCATCACCAAGGCTGGGAGGAGGATGTTCCCCAGTTACAAGGTGAAGGTTACAGGACTCAACCCAAAAACCAAGTACATACTCCTGATGGACATTGTGCCCGGGGACGACCACCGCTACAAATTTGCAGACAACAAATGGTCGGTAACGGGGAAGGCAGAGCCCGCGATGCCCGGGAGGCTCTACGTCCATCCGGACTCTCCCGCCACCGGGGCTCACTGGAGCCGCCAGCTCATCTCCTTTCAGAAGCTCAAACTCACCAACAACCACCTGGACCCCTTCGGACATATAATACTCAACTCCATGCACAAATACCAGCCTCGCCTCCATATTGTCAAGGCGGACGAGAACAACGGCTTTGGCTCAAAAAACACCGCTTTCTGCACCCACGTCTTCCCTGAGACGGCCTTCATTGCTGTGACGTCCTACCAGAACCACAAGATTACACAGCTGAAGATAGAGAATAATCCTTTTGCTAAGGGCTTCAGAGGCAGCGACGACAATGAGCTGCACCGCATGGCCAAGCTACAAGGTAAGGACTACCCTGTGGTCCCTCGCAGTACTGTCCGTCAGAGAGCCTGCTCCACCGGGAGTCCCTTCAGTGGGGGCGGTAACGCGGCGTCGAAGCCGCGAAGCCCCGCCGTCCCTCCACCGCAGAGCTGTGAGAACGGCTTGCCCACCGCAGCGCGCCCGCGGCGCGTTGAGACGGGCGGCCCCCCCAACTCACTCTTCCACCTGCAGCACGGCCAACAGCCACAAGTCTACCACTGCACCAAGAGGAAAGtGGAGGAGAACTGCTCTTCAGGAAACCACCAGCACCCGTACAAGAAACCCTTCACCAGTAGCTCTCCAAGTGAGGGCGAGTCTTACTATCACCCCTCCTCCTATCCTCCCCCTCCACCTGGTCTGTCCGACATCCCACTCACTGACTCCCCCTACAGCTCAGACATGGTGCAGCGTCAGGCGTGCATGTTTGCCAGCTCTGAGCCCAGACTGGATGAACTCAACTGTACATCCTGGTCATACACCTGCCCACTCCCCTCTGCCATGACCCCCATGAAACCCTATCCACCTTACACCCCTCATCCTCCCTACAGCTCCAGCCCTCAGGGCTCTCGACTCAGCGCTATAGCCCACCAGAACTCTCCGCCGCTGGGAGAACACATCGACTACGACCCCTATCAGAGCCAGAGCTCTGGACCTCCATCCCAAAGCTCCCAAAACATTCAAAGCAGGCAGCTCAGCTCTCCGCTCAGAGAGTATCCTCGCTACACGCGCAACTTGTCTCCTCCTCTCTACCACACCctagagacgcacacacacatcaggtGTGGCGTCCCAGAATGGAGTGCAGCCTCCTAACTGAACCAGAGGACATACCCGAAAGAGAGATTCCTCGTCTCAAATTCAGTGACCCTTCTTTCTGCACTTCTGAAAGATGCTGCGCCATATACGGACTAAATATGATTTTAACTTtgtaaaataattgttaaaagTGTGATTTTTATGCTGTGTGAAGAGGTCTCATTTGTTCCTCGTGTTGCTCCCCTGTGCTGGATGGAGCAGTGGATTGTTAAAAACTGTACTTGGACATCCATGAAGCgtcagaaaaaaagagtctgaGCAGCACAATCAAAGTTGTACCTTATCACCTTTCCATAACCCAAAGACTGGTATCATCCAACTGTCTGCACTGTGAGCCCTGTTAAGGCCAGGCCGTGAACAGCACTAGGCTGTTTTCCTCTCAATGAATCCCACATTCTTCATTGTGAACAATGTAAATTGTGACACACTGTCAGACAGGCAGTAATATTTACTGACCAAAATAATCTCAGCTCTCACAGCAGCCTGagggaaactttttttttctaaagtggAGCAAAGCACAGCTCCATGCTCAGTCTCAGTGAAGGAGAAAAGgcatgagtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataaagtcTATGTCGGCTCAGCTCAAGGATACTATGAGTGCATTTTCAATGAGACAGCCAGTAGTAGCTGCAGGCACTGCACCATAGAAATAAACAGTTTGTTTAGACCATGCTACAGGCTGAAGGACCTGTAAACACGGCTTCCACTGCATTCTGGGTAAATGCACAACTCAGCGTCACACAGCTGCCACCGCTGTCCTCTCAGTCACccccagctgaccaatcagctttCTCCTTGCACTGAGAGCCAGCCAATGAACATGCACCTCTCTTTTATCCCCAGCTGACCATTCAGAGCTGGAGCgcagcatgtgtcatgtgtgcgtgtgtgtgttggcccatttttgtttgtttcagaaTTATTCATGCATCCAGTGGTGATCCTTGACATGCAAGGATTGCTCAGCAAATATAAAGAATCACAGTGCTGTAAACGTGATAATATTGATGCACCAACTCGTTAAAA

Function

symbol description
tbx5 Enables DNA-binding transcription factor activity, RNA polymerase II-specific; DNA-binding transcription factor binding activity; and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including embryonic forelimb morphogenesis; negative regulation of cardiac muscle cell proliferation; and positive regulation of cardioblast differentiation. Acts upstream of or within forelimb morphogenesis. Located in cytoplasm and nucleus. Part of protein-DNA complex. Implicated in Holt-Oram syndrome.

NR:

description
PREDICTED: T-box transcription factor TBX5

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003007 heart morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83742 False 1229 TUCP 0.53 8 18407387 18416006
TU83744 False 2157 TUCP 0.47 2 18416128 18419590
XM_039804356.1 True 3196 mRNA 0.52 10 18407348 18419214

Neighbor

gene id symbol gene type direction distance location
si:ch211-204d2.4 plekha2 coding upstream 6607 18389111 ~ 18400741 (+)
si:ch211-113d22.2 LOC106098714,LOC103357453,LOC102788116 coding upstream 21095 18382949 ~ 18386253 (+)
LOC120560725 NA coding upstream 24753 18365745 ~ 18382595 (+)
ddhd2 ddhd2 coding upstream 49716 18345554 ~ 18357632 (+)
srrd srrd coding upstream 78811 18326964 ~ 18328537 (+)
cfap73 NA coding downstream 13227 18432817 ~ 18437190 (+)
si:dkey-98f17.5 LOC103357465,LOC102303189,LOC102202618,LOC102793122,LOC101475617 coding downstream 155398 18574988 ~ 18587715 (+)
p2rx2 p2rx2 coding downstream 218104 18637694 ~ 18642437 (+)
myo1ha myo1h,LOC104945027,LOC102796924 coding downstream 284542 18704132 ~ 18715310 (+)
ube3b ube3b coding downstream 301144 18720734 ~ 18729940 (+)
G62533 NA non-coding upstream 18863 18365280 ~ 18388485 (+)
G62508 NA non-coding upstream 86190 18320643 ~ 18321158 (+)
G62502 thoc5 non-coding upstream 92571 18313211 ~ 18314777 (+)
G62484 vcp,LOC102783844,LOC103357444,LOC107746855,LOC107393925 non-coding upstream 110445 18293260 ~ 18296903 (+)
G62406 NA non-coding upstream 279603 18127536 ~ 18127745 (+)
G62540 NA non-coding downstream 37908 18457498 ~ 18459249 (+)
G62557 NA non-coding downstream 78373 18497963 ~ 18498301 (+)
G62558 NA non-coding downstream 79040 18498630 ~ 18498972 (+)
G62532 NA non-coding downstream 80288 18499878 ~ 18500121 (+)
G62559 NA non-coding downstream 80535 18500125 ~ 18500506 (+)
G62513 NA other upstream 76118 18330705 ~ 18331230 (+)
setbp1 setbp1,LOC102781608 other upstream 278279 18074768 ~ 18129069 (+)
thbs4a thbs4,LOC104953147,LOC106958346 other upstream 377962 18015405 ~ 18029386 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other upstream 396318 17998686 ~ 18011030 (+)
tmem167a tmem167a,LOC103397084 other upstream 834643 17568013 ~ 17572705 (+)
tpcn1 tpcn1 other downstream 21757 18441347 ~ 18474731 (+)
acacb acacb other downstream 241567 18661157 ~ 18685463 (+)
mvk mvk,LOC102798305 other downstream 317928 18737518 ~ 18742399 (+)
tmem119a LOC103353570,LOC104946818 other downstream 656971 19076561 ~ 19081654 (+)
rasl10a rasl10a other downstream 1010811 19430401 ~ 19448950 (+)

Expression


Co-expression Network