G62877 (sart3)


Basic Information

Item Value
gene id G62877
gene name sart3
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19094928 ~ 19095822 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU84210
GTGTTCATATTTACCTTAAAGTcaggatttttgtttttgtcgaCACAAGGTGACACAAACATGGGCCTGCCCTCCACCTCCCGGCGGTCCAGCTTTAGAGCTTCAGGGACAGACACTGGGGATTCAAACTGTACATAGCCGTAGCCTTTGAAGGTCCCTTTGTTGCCGAAGACGGGGCGAACCTGTTTGATGGGACCACAGGTCTCAAACTGGGTCCTGAGCTTTGCCTCTGGCTCCTTCAGGGTGTATGCCAGGTTGCTGATGAATACGCTGCTGTTATCGTTGCGAAGCTCTTGCTTGTCATCGCTCTGCTGTTCGCCGGCTGCAGCTCCCTGCTGGGCTCTTTTATTGCCGGGTGGAGGCGGCTTATAGCCAGGGCGAGCGTTCCTCCCAAAGAGTCCTGTCTCGGTCTCCATGTACTCTTCTGTGGTTTGGTCCCCATTTCCTCTGTGCTTTTTAGGCACTTGTTCAGAGTTATCATTCCACTCATCTTGATAATCATCCTGCTCTGCTTTCCTCTTCTCCCCAACTCGAGATCCCTTCTGGACCTTCCTCTGAGCCTTCTTGTCTACCTTGGTCCTCCGCCGCTGATCGGCTTTCTCTTCCTCTTGGCGAGCGAGGTTGGCTTCTTTCTCAGCCACCTTTGCTCGTTGCTCATTAATCCTGTTCAGCCGGGTCTCCGTCTTCTGCACTGCCACGTCC

Function

symbol description
sart3 Predicted to enable U6 snRNA binding activity and histone binding activity. Involved in spliceosomal snRNP assembly. Acts upstream of or within exocrine pancreas development; hematopoietic or lymphoid organ development; and spliceosomal complex assembly. Predicted to be located in Cajal body. Predicted to be part of ASAP complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human SART3 (spliceosome associated factor 3, U4/U6 recycling protein).

NR:

description
PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU84210 True 702 lncRNA 0.53 3 19094928 19095822

Neighbor

gene id symbol gene type direction distance location
iscu iscu,LOC104937683 coding downstream 8272 19084932 ~ 19086656 (-)
LOC120561036 dao coding downstream 94264 18992985 ~ 19000664 (-)
usp30 usp30 coding downstream 110279 18973769 ~ 18984649 (-)
unga ung,LOC102779227 coding downstream 124086 18966794 ~ 18970842 (-)
pxmp2 pxmp2,LOC102778473 coding downstream 129063 18962946 ~ 18965865 (-)
wscd2 wscd2,LOC102782304 coding upstream 26881 19122703 ~ 19139437 (-)
pik3ip1 pik3ip1 coding upstream 131962 19227784 ~ 19234566 (-)
si:ch211-225b11.4 LOC103353536,LOC104950175 coding upstream 142083 19237905 ~ 19250837 (-)
rhbdd3 rhbdd3 coding upstream 262132 19357954 ~ 19362474 (-)
ccdc117 ccdc117 coding upstream 436857 19532679 ~ 19536142 (-)
G62876 NA non-coding downstream 109 19094484 ~ 19094819 (-)
G62875 NA non-coding downstream 2264 19092329 ~ 19092664 (-)
G62874 NA non-coding downstream 3819 19090794 ~ 19091109 (-)
G62873 NA non-coding downstream 4227 19090373 ~ 19090701 (-)
G62872 NA non-coding downstream 6555 19087763 ~ 19088373 (-)
G62878 NA non-coding upstream 964 19096786 ~ 19097132 (-)
G62880 NA non-coding upstream 1428 19097250 ~ 19170515 (-)
G62916 NA non-coding upstream 98791 19194613 ~ 19195163 (-)
G62942 NA non-coding upstream 171997 19267819 ~ 19269495 (-)
G62947 NA non-coding upstream 182930 19278752 ~ 19278977 (-)
mmab mmab other downstream 357522 18734908 ~ 18737406 (-)
G62626 LOC103357464 other downstream 582667 18510155 ~ 18512261 (-)
zgc:158398 NA other downstream 602521 18488162 ~ 18492407 (-)
iqcd NA other downstream 651910 18437676 ~ 18443018 (-)
G62582 LOC106098714,LOC103357453,LOC102788116 other downstream 708659 18383005 ~ 18386269 (-)
ficd ficd other upstream 4422 19100244 ~ 19102474 (-)
si:ch211-225b11.1 LOC103353539,LOC101465611,LOC100705171 other upstream 83683 19179505 ~ 19237086 (-)
LOC120560442 LOC104920315,LOC103374896,LOC100704901 other upstream 453629 19549451 ~ 19554908 (-)
LOC120561342 NA other upstream 615626 19711448 ~ 19731573 (-)
LOC120561469 NA other upstream 1013594 20109416 ~ 20124872 (-)

Expression


Co-expression Network