G63545 (nipbl,LOC104950412)


Basic Information

Item Value
gene id G63545
gene name nipbl,LOC104950412
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21312753 ~ 21314091 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU85165
ggttttattcttttttttacagctttttcgtCTTCAGAGATataaacattttagttttttgttgtgttaaacTATGATACAGTGGGAGTAGAAATGAGTGACTAGAATCTGCTGCACAACAGCGAAGGAGCTCCCACAACAATGTTGACAAAACATTTCCCTCCAGGTCTCTTTTCTGATAGCCTTTTTAAGGGATAATTTGGGTGAATTATTCCTTTAATGCCTTCTGGATTCTATCCTCTGCACTTGTACACAAACAAAACGTGAGCAGTCCCTCTAATATAATAAGTCTtatgttttgtgtcattttcATTCTTGCAAGAATAACTCATGTAAAAGTATGTAGTGTCAAATATTCTTGCCCTCTTGTGTTTTCTTACAAAaatgaggaaggagaggagggtaGGAATCCAGTGAAGTTTGGCTGTGTTGTTGGAGGTGGCAagttgaggaggaggagtaggagcAGGGAAGAGGAGGATTTTGATAAAGTAGAAATGGAGAAGGGGgaccaaaaaaagaaatgaaaaaaaaataaaaaataaaacgccACACGGGAGCCATTAGCTAGCCCCCCCTTCCCGCGCTGCATACAGTGAGCGTAAAGTCTGTACTACTTTGTTGCTCAGTTTGTGGTTGCTGGTCAAGGCAATCTTCTTGTAAATGATGTCCGACTCCTTAATAGTGTCCACCCAAGGCACCTGTTTGCGGCCATCACGTTTCTTGGCATCTGCCCAGGGCCCCGAGTAGGAGCCGGCCATCCAGTGGATGCTATATCCATTGGAGGTCTTCTGGATGACTCGAGCTATTTGCGGCCGGTCCTTGTATTTCGGGCAGCAAAGGGCAATCACATCCATAGATTCCACTGTCTCACTCATACGGCCGGGGTCAGAGGAGTCACCAGCTCGCCTTGACCTTCGAGAGGaCCCTGGGGTCCTTTCGTCGTCACTATAATCGTCATCTGTCTCTGGCCCTGCCTGATTGCGCGGGCTGGGTCCTGACATGGGGCCGGAGCCTCCCAGTAGGGCATTTATGGCTTTGTTTCTGATGTTAGCGCTGGCAGACGCTtctccctcctcatcctcctcgtcTGGGTCCAGATGTTCCATCAGAACCTTGAACTATGCGGAGTGAAAAGACAAGAAACTAACTTTGAGACACAAGTTTCACACACTGCAGCATTTAAACATCAACCTCAAAGAACCCAACAGGACAGAACAGAGTTTGGGTAACCATAAGAAACTAA

Function

symbol description
nipbl Enables several functions, including chromo shadow domain binding activity; histone deacetylase binding activity; and protein C-terminus binding activity. Involved in several processes, including animal organ development; cellular response to X-ray; and sister chromatid cohesion. Located in cytosol and nucleoplasm. Part of Scc2-Scc4 cohesin loading complex. Implicated in Cornelia de Lange syndrome 1.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: nipped-B-like protein A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85165 True 1246 lncRNA 0.46 2 21312753 21314091

Neighbor

gene id symbol gene type direction distance location
LOC120560913 gdnf,LOC103362940,LOC102209597,LOC101471543,LOC102304722,LOC106526208 coding upstream 30245 21278402 ~ 21282508 (+)
si:ch73-72b7.1 unc5c,LOC102797243,LOC102309063,LOC102212007 coding upstream 262904 20849986 ~ 21049849 (+)
stpg2 NA coding upstream 760934 20499130 ~ 20551819 (+)
LOC120560324 NA coding upstream 911761 20397583 ~ 20400992 (+)
LOC120560540 NA coding upstream 916636 20394843 ~ 20396117 (+)
LOC120561163 lmbrd2 coding downstream 79682 21393773 ~ 21403390 (+)
golm1 golm1 coding downstream 89872 21403963 ~ 21410730 (+)
agtpbp1 agtpbp1 coding downstream 114252 21428343 ~ 21458347 (+)
hnrnpk hnrnpk coding downstream 312921 21627012 ~ 21641536 (+)
c6h9orf64 LOC103366756,LOC102204152,LOC102298164 coding downstream 328806 21642897 ~ 21649576 (+)
G63511 NA non-coding upstream 90102 21164816 ~ 21222651 (+)
G63471 NA non-coding upstream 651596 20660840 ~ 20661157 (+)
G63468 NA non-coding upstream 665256 20646192 ~ 20647497 (+)
G63465 NA non-coding upstream 669481 20642917 ~ 20643272 (+)
G63460 NA non-coding upstream 671651 20640758 ~ 20641102 (+)
G63576 NA non-coding downstream 32276 21346367 ~ 21347517 (+)
G63627 NA non-coding downstream 165689 21479780 ~ 21484666 (+)
G63628 NA non-coding downstream 172678 21486769 ~ 21487038 (+)
LOC120560273 NA non-coding downstream 294732 21608823 ~ 21620711 (+)
G63641 rmi1,LOC102777824,LOC104967280 non-coding downstream 302132 21616223 ~ 21618602 (+)
G63480 rbm19 other upstream 634837 20676417 ~ 20677916 (+)
wdr31 wdr31,LOC102796061 other upstream 822167 20473651 ~ 20490586 (+)
vps13a vps13a other upstream 870660 20400947 ~ 20442093 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 1549229 19759596 ~ 19763524 (+)
rasl10a rasl10a other upstream 1863803 19430401 ~ 19448950 (+)
LOC120560787 NA other downstream 274785 21588876 ~ 21599289 (+)
G63905 NA other downstream 1615808 22929899 ~ 22930205 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other downstream 2173876 23487967 ~ 23562285 (+)
G64108 NA other downstream 2378571 23692662 ~ 23693291 (+)
prxl2c aaed1 other downstream 3507223 24821314 ~ 24823066 (+)

Expression


Co-expression Network