G63641 (rmi1,LOC102777824,LOC104967280)


Basic Information

Item Value
gene id G63641
gene name rmi1,LOC102777824,LOC104967280
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21616223 ~ 21618602 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU85279
TCTTTTCAATCATGTTTTATTAGTCAAAGAGTGTGAAAGACAATTATAAAACCTTAAGAACAATTCTATTTCAGTATACAGTAAACACTGTGGCAAAGCTTCAAATTtgtgatatatactgtatatatttatcaaagacaaaaacatagatGAGGCTCtataatgaaaagaaataatCAAAGCTCATGGACTCTCCTTTATCTCCCTTTCCTCTCATTCTCCTCTGGGGGAGTTTATTAAAGACCCATGCTGCCCTTGGATATTCAATCATTTGAAATGGATTTGAATAAATTCAAAGGCTGGCAATTCATTACAACAATCAGACTATGAACTATTTTCTCCCCCGATTCTCTTCTCTCATCTCACATGCTTCACTCTTCTCTTCACATAGTTTTTAATGTTACATACAATTTGGGATGCTCAACTCTGGattgtttaaactaacatgCTGATATCCTATCATTAATATGCAGTGCAGAAGATAGTATAGATCTGTTTACTTTGGTTGGGAGAGATGCAGTGCATTTCAAACAGAAAATAtctctgaataaatgaatgaaaacgACAAATGGCAGAATGTCACATTCACATATAGCAGATGGGATGCATTGCAACACACTGCTTGCTGATCATCAGACATCCAGTTCACACATTATGCTTTCCAAATCTGAAGCAGAAGGGCAGGTTGATCACCAAtcctaaaaaaaatcattagttTCATTACATGAGGGAGATTTTTAAGGCGATGCTTATATTTGCAATTTTTCATCACTGTATGAGGGCAATATACTTCTCCGCTGCCTGTAGTTTTTCTCATTATCGCCCACCTCTCCTCTGTGTCTATTTTCTCCTGTCTCGCACCCTTTGCTCCAGCTCCTGGACTATTTTCTCATTGACGGGGTCCGCCTTGGTCACCACAGCTTTTCTGCCGTCTGGTTCAACCACGACTGTCATAACACAGCACATATCCACCAGCTCCTCCTGACACCTCCTCATCCCAATGTCTAGCTCACCTCTCCTGGCTGGGTCACGCTTCAGGGCCCCCTTCTCCGCCACAGAGAAGCCCAGCAGGCCTGTCAAAACCTCATCGGACAGCTCCACGTCCAGGTCTCTGATGGACAGGGAGCTGATCTGGCCCTCCAGTCCTTGCAGTTTCTACCTCCACGAAAAAGCAGTCCATATCTTCATCCATGAAATCTGTGTCATCATTAGTAATACATTCTAAATCATGGGATGGCTCTAAAGCTGCTGCTGGGGAAAATAACTGCCCTGTAGCGCCAATGGTACAGCCTTGATAGTCTCTTTTCTGTGTGGTGGATCTGGAGTTGCTTGAACCAAGCTGTGACCCAGAGTCATTCAAAGTGTGCTGCTCAAACTGAGCAGTTGGGGCTTTTGTTGCTGTATTAGGATTTCCTGTTATTCTGTTGTTGTTCTGTGGCGTGCTTCTGTGACTGCTGTCATCATTTGTACTTTCTTGAAAAATCACACTGTCCAACTCATCCAGGGGAAGATCGTCAAAGTCTTCATCAGGAAAGTCTTCGTCTGCCATGTTGTGCTCTGGGATCTCTTGTTGAATCGAGGAGTCAAAGAGGTCAGAATCCTCTTGTTTGTTACCATGGCGATGactttggactgaaccacctCTGTTGCTCTGGGTCAAACCACTTCTATAAGAGCGGGCAGAGGCTTCACTTCTACAAGAGACCAACCAAAAATGTTAGACTGAGTTAATATAGCTTTAAACCAGCAAGTTTTTTTTAGTGTTGGTGGGCCCATTATGCTAGAGGCATACCCTAGAAATTAAAATCTCATGTCAGAATAGGTAGGAGTCTTTTTGGAAAAAGTAAAAGCTCTAACGCTACAGAAACAAGGGGACCAAGATAGTTATAAGTCAGTTATTAGTCTTAAACTTTGATTACAGCGTGAAGTGGGTACATTTACAATACCTTGACACCACAGCTTGTCGTTCAAGTCAAAACGATAAAATTATG

Function

symbol description
rmi1 Predicted to enable nucleotide binding activity. Predicted to be involved in double-strand break repair via homologous recombination and resolution of meiotic recombination intermediates. Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of RecQ family helicase-topoisomerase III complex. Predicted to be active in nuclear body. Orthologous to human RMI1 (RecQ mediated genome instability 1).

NR:

description
PREDICTED: recQ-mediated genome instability protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85279 True 1991 lncRNA 0.42 2 21616223 21618602

Neighbor

gene id symbol gene type direction distance location
agtpbp1 agtpbp1 coding upstream 157876 21428343 ~ 21458347 (+)
golm1 golm1 coding upstream 205493 21403963 ~ 21410730 (+)
LOC120561163 lmbrd2 coding upstream 212833 21393773 ~ 21403390 (+)
LOC120560913 gdnf,LOC103362940,LOC102209597,LOC101471543,LOC102304722,LOC106526208 coding upstream 333715 21278402 ~ 21282508 (+)
si:ch73-72b7.1 unc5c,LOC102797243,LOC102309063,LOC102212007 coding upstream 566374 20849986 ~ 21049849 (+)
hnrnpk hnrnpk coding downstream 8410 21627012 ~ 21641536 (+)
c6h9orf64 LOC103366756,LOC102204152,LOC102298164 coding downstream 24295 21642897 ~ 21649576 (+)
LOC120561417 kif27 coding downstream 31855 21650457 ~ 21660743 (+)
gkap1 gkap1,LOC102779162 coding downstream 43101 21661703 ~ 21672091 (+)
LOC120560432 NA coding downstream 53605 21672207 ~ 21679064 (+)
G63628 NA non-coding upstream 129185 21486769 ~ 21487038 (+)
G63627 NA non-coding upstream 131557 21479780 ~ 21484666 (+)
G63576 NA non-coding upstream 268706 21346367 ~ 21347517 (+)
G63545 nipbl,LOC104950412 non-coding upstream 302132 21312753 ~ 21314091 (+)
G63511 NA non-coding upstream 393572 21164816 ~ 21222651 (+)
G63714 NA non-coding downstream 226230 21844832 ~ 21845138 (+)
G63715 NA non-coding downstream 256843 21875445 ~ 21875687 (+)
G63792 NA non-coding downstream 513282 22131884 ~ 22150124 (+)
G63872 NA non-coding downstream 1285433 22904035 ~ 22905966 (+)
G63914 NA non-coding downstream 1368579 22987181 ~ 22988040 (+)
LOC120560787 NA other upstream 16934 21588876 ~ 21599289 (+)
G63480 rbm19 other upstream 938307 20676417 ~ 20677916 (+)
wdr31 wdr31,LOC102796061 other upstream 1125637 20473651 ~ 20490586 (+)
vps13a vps13a other upstream 1174130 20400947 ~ 20442093 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other upstream 1852699 19759596 ~ 19763524 (+)
G63905 NA other downstream 1311297 22929899 ~ 22930205 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other downstream 1869365 23487967 ~ 23562285 (+)
G64108 NA other downstream 2074060 23692662 ~ 23693291 (+)
prxl2c aaed1 other downstream 3202712 24821314 ~ 24823066 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other downstream 3205116 24823718 ~ 24837448 (+)

Expression


Co-expression Network