LOC120560905 (clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270)


Basic Information

Item Value
gene id LOC120560905
gene name clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 23487967 ~ 23562285 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU85820
AAAGCATTCCACTCTGTCCTGATCACTTGCCTCCGGCTCACTGCTCTCCCTTCTTCTCTGTCATTCAGTGGCTGTATGAAAGGAGCGCCGTGTGGTCACAGACGAGGCTGGTGGAAGAAGTCAAAGCAGAGGTGATCTCGGATCAGCTAGTAATGCTTTTGGAGCTTCTGCTGGAGGAAGAGAAGCTGAGCCGGCAACAGTGCGTGCTCTACAGAGAACTTACAACCTACAGAATCAAGACGCTGAGGTGCAACATCGCTGGTGTGAGCTGGTGGTCAAACATGCGTACACTCGGGCTTACAGAGACGTGGAACACTTTCTGGTTCATGACCaggccATGGGTGTGTATCTGTACGGGGAGCTGATGGTTCAGGAGGACCCTGAGCAGCAGGCTCTGGCCCGTCGTTGCCTCTCATTGGTCACGGAACAAATggaccaatcagcacgcagagTGGTAGAGGAGATGGTCCTTTGATTTTGGAGGTTGACTACAGATGGAGATGACAGGAGTTTGGCGTACGAGGGTCCAGAGGGTTCACCTCCTCTTCTGTAAGAGAGGGGATGCTGCACAATCGCTCAGTAGAGTAAACACCAGAAGGCTGCACTCTTATTTTACAACCAAGGCCAATTGGCAAGGTTTAGAGTACAGCAGTTCTGTCCATTCAAGGCTAAAGAAATAAGTGGTGTGTGTAAACCAATAACAATACAAGATGTTCCTTGTGAGATGAAATGTTGTTGACTACATTATTGCATACTGTGGTCaaagaaaaatgacataatGTCACCGGTTTTAAAATGATAGACACTGGGAAAAGGGAGATATTTCACTGATAGAGATACTGCAtcactgtaaacccagatttagttgtaattaaactttttagtggtcactccttattctttcatgttttgttaagaAACATATTAattactaaatcacattagttgtttgtatTAATCAGCTAaagtatgcagtgcacagatcacattaagcagagataattaaggatgttaagtttctgtatgggaggggcggggtcacTTGAACTGTTCTTTTAGACACCATGACTCCAGAAAAAGATTATTTATGTTTACTAaggatttttagtaatgactactaatgtaaacttgatttgtctactgcatcaacttaccgctctgttttaatacaacttgacctgttaagtttcaccttgtgtaaaaacttaGATGGTTTTAAGCAACGGGTTTCCACACAAATTTCgagtaaagtcaactaatttgggATAACAGTGCACCTCCATCCATGTTTAAGAACCTGAGCTGTGTTtaagtttctgtgtgtgcaggtgtgacTTCATGTCTGTTTAGTCTGAAGCCATGATCTGGTTCTTAAGAGTTTAGACAGGAAATACTTTCAGATGAGTCAAGTTTTCATACATAACAAATTACTTCACTCTGGTCAGTAACAACACTGGAAAGTATACAACCTCTCGGGGCATTTCTATATGTGTAAATGATGATTTTGTAATTGCTGtgcaaactttttttctttgtatagGTCA
>XM_039803796.1
GTTTGCTGTCGCGTAAGTATGACGTCATCGCCGCTCGACTTCGACATGACGGACACTGGTTTGTTGTAGATTTCATTCACAACAAGTAAAGCACGTACTTGTGAGTCCCAGACAGTGATTTAACCATCCTCTGCTCAACTTTGACGCCATTTGTGTAACATGGAGCCAGACAAGGACCTAAACCCGGACATGGATGACCTTCCACTCCGAGCCAATACTAACCACATACTTGTCAAACATTATGTGCTGGACCTGACTGTTCATTTTGACAGGAAGGTCATCAGTGGTAGTGTTGTTCTGTTCCTGGAGCCTTGCTCTGGATTAGGGACTAAGGCTGAGGATGACACTGGACCTGGAGCTGGGACTATAGAGGCCGGAGGGAGTCGGGATGTGACCGTGTGTATATCTCGGGATATGGATACAGTGGAGGATGGTACAAAAGGACTTGGGGAGACTACGACAAGGATGGAGAAGATGTCTGGTGCTAGTGAAAGGGATGGTGCTGAATTTCAGGCTTCGTCTGCCGTGGGGTCGCAGACTGCATCTAAAACCGAAAATATTCAGTCTTCACATTCGTGGGAAACCACCAGTGACGATGATTTCACCTTAGTGCTCGACTGCTGTGACTTGGATGTGTCAAAGGTGGAAGAGGTGGACGTCACCTCTGTGTCATCCATGGTTGCATCTGAGAGGTCAGATGTCAGTTCAGTGAACCCACAAGCAGCCTTTATTCAGAACCTTATCTCAGTGCCCTCTAGCCGACGGAGGCAGAAGCAACAGCTGTTTCTGCTGTGTAGCCGTGCCCATGGGGCTCAGGACGGCAGCTCACTGCATTTTCAGAGAGACCGATGGAGTCTGCAGGTGAGGAAGAAGGGGGTCGCGACACCTCAGGAGTTCCCTCGTGCTCTCAGGATCTGCTATGAGACGAGGCCAACCGGAGGCTCTGTGAGATGGACCAAAGACCAGGACAACAGGGTGTGTGTTTACACTGCCGGTTCTCCCATCAACAACCGAGCTCTCTTCCCCTGCCAGGAGCCGCCTGTTGCCATGTCAACATGGCATGCAACAGTACGGGCCCCTAGTGAGTGTGTGGTTTTGATGAGTGGGGAGGAGCAGACTGTACCTATTGAGGACGGGGACACACCCTTCTTAATCTGGAATTACTACGTCACTATGCCCATGCCTGCCTCCACCTTCACATTGGCAGTGGGTCACTGGCACCAAGTCACAGCAGAAATTCCCCCAGCATTGGAAAGAGGGGTGAGGGCCGGGGCGCATTGTAGCAAGATCGCCAAACTCGGGGCTGGGCCTGGAGAATGGACCGAGGCTGACCTTAGGTCTGGGCTTGTAAGCTCCATTAGTGAAGTAGTAAAGGGCTCTCCACTCAAGACTGGCagCGGAGACCAGACCACCCGCTCAGACTCTGCATTCTGTTACTCTTCCCTTGAGGATGAGGGGCTCTCTGTAACTGATGATTCAGGCATGGTGGATGATGGCATCTGTTGTTCCCATGACGACTACCCTTGCCGATTTACTGAGCAGTCGGCTAGGTCCCAGCGGGTGATTCCACACCGTGTGTTTGGCCCCGTCTGCTTGCTGCAGAAGGCCCAGGGAGTCCTTAAGCTGTTGCCTCGATGTTTGGCTGCAGCCCACACCGTTCTGGGTGTTCACCCCTTTCCTCGCCTTGATGTTCTCATCGTGCCGGCAGGATTCTCCAGTCTGGGCATGGCCAGCCCCCATATCATTTTCCTATCTCAGAGTGTGTTGTATGGTGGGAGTCTTGGTTCTGGAGAGAATGGCCTGTCTCTGTGTGGGTCCAGGATGTGCCATGAAATCGCCCACTCCTGGTTCGGCCTAGTTATTGGAGCCAGAGACTGGACTGAGGAATGGATCAGCGAGGGCTTTGCCACgtacctggaggacattatctGGGCCCAAGCACAACAACTCTCCTTACAAGAGACAGCAGAACAGTCTGACCTGAAGGCACTGCTGAGGTGGAGACGACTCTCTGATGAGTTGCAGAACTCTGAGGAGGCCCTTCAAATCCTCAGGCCTAACATGGAGCACACTGGTCAGGTCAGTGAGTCTGGCTCCTCCACGGTTAAACATGCCCTCAACCCTGAGAAAACCTTCATGCAAGTCCACTACCTCAAGGGTTACTTCCTCCTCAGGTTCTTGGCCAGTCAAGTGGGAGAGCAACAATTCATCGACTTCTTCAGATCATTTGTAAAGAAATACCACGGGCAACTCATTTTGTCTCAGgattTCCTGCGAATGCTGCTGATTACCTTTCCCAGCATGGAGAGAAAAGGCCTCACCCTCAATGCTATTTATGCTGACTGGCTGGATCGACCGGGAATTCCAAAGTGGCTGTATGAAAGGAGCGCCGTGTGGTCACAGACGAGGCTGGTGGAAGAAGTCAAAGCAGAGGTTGTAAAATGGATTCTCCTCAGTCAGAGTCATCAGGGAAAGGGCAGAAAGCGGAAGAGAATAGAGCCCAAGGTGAACTACAAAGAGGTGATCTCGGATCAGCTAGTAATGCTTTTGGAGCTTCTGCTGGAGGAAGAGAAGCTGACGGCAACAGTGCGTGCTCTACAGAGAACTTACAACCTACAGAATCAAGACGCTGAGGTGCAACATCGCTGGTGTGAGCTGGTGGTCAAACATGCGTACACTCGGGCTTACAGAGACGTGGAACACTTTCTGGTTCATGACCaggccATGGGTGTGTATCTGTACGGGGAGCTGATGGTTCAGGAGGACCCTGAGCAGCAGGCTCTGGCCCGTCGTTGCCTCTCATTGGTCACGGAACAAATggaccaatcagcacgcagagTGGTAGAGGAGATGGTCCTTTGATTTTGGAGGTTGACTACAGATGGAGATGACAGGAGTTTGGCGTACGAGGGTCCAGAGGGTTCACCTCCTCTTCTGTAAGAGAGGGGATGCTGCACAATCGCTCAGTAGAGTAAACACCAGAAGGCTGCACTCTTATTTTACAACCAAGGCCAATTGGCAAGGTTTAGAGTACAGCAGTTCTGTCCATTCAAGGCTAAAGAAATAAGTGGTGTGTGTAAACCAATAACAATACAAGATGTTCCTTGTGAGATGAAATGTTGTTGACTACATTATTGCATACTGTGGTCaaagaaaaatgacataatGTCACCGGTTTTAAAATGATAGACACTGGGAAAAGGGAGATATTTCACTGATAGAGATACTGCAtcactgtaaacccagatttagttgtaattaaactttttagtggtcactccttattctttcatgttttgttaagaAACATATTAattactaaatcacattagttgtttgtatTAATCAGCTAaagtatgcagtgcacagatcacattaagcagagataattaaggatgttaagtttctgtatgggaggggcggggtcacTTGAACTGTTCTTTTAGACACCATGACTCCAGAAAAAGATTATTTATGTTTACTAaggatttttagtaatgactactaatgtaaacttgatttgtctactgcatcaacttaccgctctgttttaatacaacttgacctgttaagtttcaccttgtgtaaaaacttaGATGGTTTTAAGCAACGGGTTTCCACACAAATTTCgagtaaagtcaactaatttgggATAACAGTGCACCTCCATCCATGTTTAAGAACCTGAGCTGTGTTtaagtttctgtgtgtgcaggtgtgacTTCATGTCTGTTTAGTCTGAAGCCATGATCTGGTTCTTAAGAGTTTAGACAGGAAATACTTTCAGATGAGTCAAGTTTTCATACATAACAAATTACTTCACTCTGGTCAGTAACAACACTGGAAAGTATACAACCTCTCGGGGCATTTCTATATGTGTAAATGATGATTTTGTAATTGCTGtgcaaactttttttctttgtatagGTCAAGTGAACATTTTTAATATGttcatgttaaaataaaatgttttcttaaaataaa

Function

NR:

description
PREDICTED: aminopeptidase O

GO:

id name namespace
GO:0019370 leukotriene biosynthetic process biological_process
GO:0006508 proteolysis biological_process
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09606 C9ORF3; aminopeptidase O

RNA

RNA id representative length rna type GC content exon number start site end site
TU85820 False 1544 lncRNA 0.42 5 23525647 23562232
XM_039803796.1 True 3984 mRNA 0.48 19 23487967 23562285

Neighbor

gene id symbol gene type direction distance location
dock8 dock8 coding upstream 461 23408216 ~ 23487506 (+)
LOC120561043 NA coding upstream 133703 23352950 ~ 23354264 (+)
LOC120560302 zswim6 coding upstream 157419 23283079 ~ 23330548 (+)
ndufaf2 ndufaf2 coding upstream 214265 23257261 ~ 23273702 (+)
elac1 elac1 coding upstream 596948 22884588 ~ 22891019 (+)
ercc6l2 ercc6l2,LOC105014104 coding downstream 142117 23704402 ~ 23722529 (+)
ipo11 ipo11,LOC102795548 coding downstream 192040 23754325 ~ 23906456 (+)
si:dkey-250l23.4 rnf180,LOC104964874 coding downstream 430368 23992653 ~ 24000805 (+)
rgs7bpa rgs7bp coding downstream 441797 24004082 ~ 24013484 (+)
c6h5orf51 clg12h5orf51,LOC104920657,LOC104943311,LOC103366194,LOC101465834 coding downstream 543705 24105990 ~ 24110189 (+)
LOC120560908 NA non-coding upstream 44654 23431481 ~ 23443313 (+)
G64026 NA non-coding upstream 55494 23430690 ~ 23432473 (+)
G63976 smim15,LOC106580593,LOC103398561 non-coding upstream 206858 23274920 ~ 23281109 (+)
LOC120560300 NA non-coding upstream 242599 23219850 ~ 23245368 (+)
G63914 NA non-coding upstream 499927 22987181 ~ 22988040 (+)
G64127 NA non-coding downstream 172539 23734824 ~ 23735293 (+)
G64130 NA non-coding downstream 182654 23744939 ~ 23749835 (+)
G64172 NA non-coding downstream 452793 24015078 ~ 24017068 (+)
G64183 NA non-coding downstream 487683 24049968 ~ 24058761 (+)
G64188 NA non-coding downstream 539221 24101506 ~ 24104352 (+)
G63905 NA other upstream 557762 22929899 ~ 22930205 (+)
LOC120560787 NA other upstream 1888678 21588876 ~ 21599289 (+)
G63480 rbm19 other upstream 2810051 20676417 ~ 20677916 (+)
wdr31 wdr31,LOC102796061 other upstream 2997381 20473651 ~ 20490586 (+)
vps13a vps13a other upstream 3045874 20400947 ~ 20442093 (+)
G64108 NA other downstream 130377 23692662 ~ 23693291 (+)
prxl2c aaed1 other downstream 1259029 24821314 ~ 24823066 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other downstream 1261433 24823718 ~ 24837448 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other downstream 2122679 25684964 ~ 25696576 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other downstream 2351994 25914279 ~ 25915577 (+)

Expression


Co-expression Network