prxl2c (aaed1)


Basic Information

Item Value
gene id prxl2c
gene name aaed1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24821314 ~ 24823066 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU86072
AGCAATGCGAATTCGGGAAGCCTCAGAAAAAAAATGGCTGAAGCAGTTTCACCAATAACTCGACAAGTAAATTCAGAACATCGTGCAATTAGGAGCCCTTCTGTCGATTTTCGTCTTGAAGACGTCGAAGATTGTTTAATTTACGACCGGCATGGAGTCTCTGATCCGTTCAAGAAATTATATCAAGACAGGAAATCGGTCATAATTTTCGTGCGGGTACGGATAAACTTTGTTTGGCTTAACCTTGCTGACGATTCATGGGCTACACTGCCTGGAGTAAAATCATTAGAGGCTAAAGTTTATAGGTTGAGCTTCATAAATGCATCACTTTAGGCAACAGGTAAGCATCAGCTTTGCTGGACAGATGCCCCAACAGCTTCCCATGCTATGATGGCAATGGAGGAATGGAAAAATCATATCAAATTTCTTGTGCTACAGCTGTAAAGAATATGTGGAGGATTTGAGCAAAATACCTAAAGAAGCACTGGAGGATGCTGACATTAGACTAGTTGTGATTGGCCAGTCTGCTCACCATCATATAGAGCCTTTCTGCTCATTGACGGGGTATCCTCATGAAATATATGTGGACCCAGAGAGGTGCATTTATCAAAAGCTTGggatgaagagagaggagaaattTACGGACTCAGGTAATGGCAATAACAGTAGAAGGCCATAAACCCAGCATATTTTTAGATGGTAAATAATTGAatctttgtat
>TU86073
AGCAATGCGAATTCGGGAAGCCTCAGAAAAAAAATGGCTGAAGCAGTTTCACCAATAACTCGACAAGTAAATTCAGAACATCGTGCAATTAGGAGCCCTTCTGTCGATTTTCGTCTTGAAGACGTCGAAGATTGTTTAATTTACGACCGGCATGGAGTCTCTGATCCGTTCAAGAAATTATATCAAGACAGGAAATCGGTCATAATTTTCGTGCGGGTACGGATAAACTTTGTTTGGCTTAACCTTGCTGACGATTCATGGGCTACACTGCCTGGAGTAAAATCATTAGAGGCTAAAGTTTATAGGTTGAGCTTCATAAATGCATCACTTTAGGCAACAGGTAAGCATCAGCTTTGCTGGACAGATGCCCCAACAGCTTCCCATGCTATGATGGCAATGGAGGAATGGAAAAATCATATCAGTAGAATTTCTTGTGCTACAGCTGTAAAGAATATGTGGAGGATTTGAGCAAAATACCTAAAGAAGCACTGGAGGATGCTGACATTAGACTAGTTGTGATTGGCCAGTCTGCTCACCATCATATAGAGCCTTTCTGCTCATTGACGGGGTATCCTCATGAAATATATGTGGACCCAGAGAGGTGCATTTATCAAAAGCTTGggatgaagagagaggagaaattTACGGACTCAGGTAATGGCAATAACAGTAGAAGGCCATAAACCCAGCATATTTTTAGATGGTAAATAATTGAatctttgtat
>TU86075
AGCAAGGTGGAGCCATCATTGCAGGACCAGGCTCTCATGTTCATTTTTCCCATTTTGACATGAACCGTCTGGATCACATGCCCATTAACTGGCTCCTGCAGCTCGCCGGAGTTCAACAGACTCTGGACTTCAGCGATAAGCCAAAGATCGTCCATGTGTAGCCAGCTGGCcgccttcctccctctccccacATCACTGTTTGGgcaacaaatatttttttagtcTATTTTTTTATCATGTCTGTACTGGGACGCTGCCTTGCCAAAATCTTGGATAGGTCTGAAATGTACAGTCTATGTTGAGTGTGAAAATTCATTCTTGACCAATGGAAACTGTATAGTTTGACAAAAATCTTAACTCAATGTCTTCTTCCTAAGCCCTTTGTCTCCTTGTGAAGCACAGCTCATTAACAATTCTTCTCCACCGACCACCGCTCTCG
>XM_039804015.1
ATGCGAATTCGGGAAGCCTGAAAAAAAATGGCTGAAGCAGTTTCACCAATAACTCGACAAGTAAATTCAGAACATCGTGCAATTAGGAGCCCTTCTGTCGATTTTCGTCTTGAAGACGTCGAAGATTGTTTAATTTACGACCGGCATGGAGTCTCTGATCCGTTCAAGAAATTATATCAAGACAGGAAATCGGTCATAATTTTCGTGCGGAATTTCTTGTGCTACAGCTGTAAAGAATATGTGGAGGATTTGAGCAAAATACCTAAAGAAGCACTGGAGGATGCTGACATTAGACTAGTTGTGATTGGCCAGTCTGCTCACCATCATATAGAGCCTTTCTGCTCATTGACGGGGTATCCTCATGAAATATATGTGGACCCAGAGAGGTGCATTTATCAAAAGCTTGggatgaagagagaggagaaattTACGGACTCAGCGTCCTGCGCACCCAAGCAAGGTGGAGCCATCATTGCAGGACCAGGCTCTCATGTTCATTTTTCCCATTTTGACATGAACCGTCTGGATCACATGCCCATTAACTGGCTCCTGCAGCTCGCCGGAGTTCAACAGACTCTGGACTTCAGCGATAAGCCAAAGATCGTCCATGTGTAGCCAGCTGGCcgccttcctccctctccccacATCACTGTTTGGgcaacaaatatttttttagtcTATTTTTTTATCATGTCTGTACTGGGACGCTGCCTTGCCAAAATCTTGGATAGGTCTGAAATGTACAGTCTATGTTGAGTGTGAAAATTCATTCTTGACCAATGGAAACTGTATAGTTTGACAAAAATCTTAACTCAATGTCTTCTTCCTAAGCCCTTTGTCTCCTTGTGAAGCACAGCTCATTAACAATTCTTCTCCACCGACCACCGCTCTCGGTTTTGGGATGCTTA

Function

NR:

description
C1orf93 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86072 False 721 lncRNA 0.41 4 24821314 24822348
TU86073 False 725 lncRNA 0.41 4 24821314 24822348
TU86075 False 439 lncRNA 0.45 2 24822491 24823051
XM_039804015.1 True 908 mRNA 0.44 7 24821318 24823066

Neighbor

gene id symbol gene type direction distance location
gadd45ga gadd45g coding upstream 606225 24213241 ~ 24215089 (+)
creb3l3l LOC103366202,LOC104958765 coding upstream 610872 24203522 ~ 24210442 (+)
nim1ka nim1k coding upstream 618330 24181917 ~ 24202984 (+)
znf131 znf131,LOC102798529 coding upstream 639503 24174441 ~ 24181811 (+)
ghra LOC103366197 coding upstream 658844 24126863 ~ 24162470 (+)
znf367 znf367,LOC102779640 coding downstream 20640 24843706 ~ 24849355 (+)
smyd1b smyd1,LOC107394125,LOC100708974 coding downstream 71996 24895062 ~ 24901099 (+)
znf366 znf366 coding downstream 101463 24924529 ~ 24932594 (+)
mrps27 mrps27,LOC106943511 coding downstream 112594 24935660 ~ 24948527 (+)
ptger4a LOC103360740,LOC104967800 coding downstream 135096 24958162 ~ 24962478 (+)
LOC120560123 NA non-coding upstream 302441 24514819 ~ 24518873 (+)
G64251 NA non-coding upstream 458405 24362475 ~ 24362909 (+)
G64235 NA non-coding upstream 586826 24234274 ~ 24234488 (+)
G64200 NA non-coding upstream 651786 24164677 ~ 24169528 (+)
G64188 NA non-coding upstream 716962 24101506 ~ 24104352 (+)
G64279 NA non-coding downstream 37183 24860249 ~ 24862730 (+)
G64287 NA non-coding downstream 53496 24876562 ~ 24892517 (+)
LOC120560056 NA non-coding downstream 211643 25034709 ~ 25040898 (+)
G64392 NA non-coding downstream 386858 25209924 ~ 25210170 (+)
G64450 NA non-coding downstream 436650 25259716 ~ 25302920 (+)
G64108 NA other upstream 1128023 23692662 ~ 23693291 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other upstream 1259029 23487967 ~ 23562285 (+)
G63905 NA other upstream 1891109 22929899 ~ 22930205 (+)
LOC120560787 NA other upstream 3222025 21588876 ~ 21599289 (+)
G63480 rbm19 other upstream 4143398 20676417 ~ 20677916 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other downstream 652 24823718 ~ 24837448 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other downstream 861898 25684964 ~ 25696576 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other downstream 1091213 25914279 ~ 25915577 (+)
LOC120560359 NA other downstream 1103021 25926087 ~ 25928596 (+)
nsd3 whsc1l1 other downstream 1536054 26359120 ~ 26383843 (+)

Expression


Co-expression Network