LOC120560635


Basic Information

Item Value
gene id LOC120560635
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25548023 ~ 25552264 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU86357
tcttCGAGCAGCAACCCAATAACGGATTACCGCATCAACCTTGTCACCAAAAGGTTATGTATGCCTCAAAATGACTTAATTTCATTTGGGTTGTAGGCCTATACCAGCTCCCACAGCAACATGTTTGTACATGGGAGAAGGAGGTTCTCGCTGACCAGCAGCTCTGTATTCAGGAGGGGAACTCCAGTCTGGACTAAGAGGACCCAGAGTCTCCACAGATTAAAGAACAGGAGGAAGAGCAGCTTGTACTAAAGCAGGAGACTGATACCTTTATGTTGACTCCTATGTGTGTGACCACCAGCTCCTCTCTTCCAACCATCTTGTAGCTGAGGATCAAGAAATGCTGATCCAAATCCAAAGAACAGACATCCCAAACGCAGAAGTCACAGTAGCAAGCTATACAACTCTACCATGTCAAAAAATACTCTGATATACTACTGAGTAATACTCACAAAGGtaaaaagtctttaaaatgtGACGAATGTGGCAAAGCTTTTATCTGTTTGTCAAAATGTAAAGCACActtgagaatccacacaggtgagaagcatTTGTGTGTGAAACATGGGAAAGATTTCATACAGAGTGGTCAATTGAAATAACACGTAAGAACGCACACAGGCGAGAAGCCATATTTGTACAAAACATGTGGGAAAAATTTCAGAGGTGGCAGTGCCTTGAAGGTCCACATGAGAatgcacacaggtgagaagcagTATACTTGTGAAACATGTGGGAGAGCTTTCAGACAGGGTGGTGAATTGATACTCCACATGAGAAtacacacaggtgagaagccatTTGTTTGCAGCACCTGTGGGAAAAGATTCAGTCTGACATATGAATTGAAAAGCCATACAAGAATCCATACAGGTGAAAAACCATGTTTGTGCAAAACATGTGAGAGAGGTTTCAGAATGAGTCGTGACTTGGCAGCACACAGGAGAAGAACCAGTGAAAATATATTGTTGTAAGGAAGTAGTACATTGTCAACAATGCTATGAAGTTTTGGTGAACTCACATCGTTTTATTTCCCTTCATATTACAGCattattgacatttttgttaGCAACAGTATCTCTTTGAAAAGTCTTTGTTGCACAGTGAGTTTATAGTTCCTACAAATGTTTGACCTGCTAAAtgaatattgttttttaaaacatttcatacaCCACCATGTCCACCTCAGTTATGAGTGGATTGTAAAAagggctttattggcatgaaagtttcaaaaacaatgttgccaaagcatcaaaATACAATTTGTCCAAATATCCAGACAGTACACAATAAACAGTATTATGAACATTAACACAACATCCTG
>XR_005639499.1
GCCCTCCGCGGGAGCGCGCGCGTAAGCCTCGGTCGCCCAGTTTATATAcccatttttatataaaatatccCATTTTTATATAAAAGCAACATTCTAGTTGCTTTTATTacgggttttttttttagatatcttCGAGCAGCAACCCAATAACGGATTACCGCATCAACCTTGTCACCAAAAGGTTATGTATGCCTCAAAATGACTTAATTTCATTTGGGTTGTAGGCCTATACCAGCTCCCACAGCAACATGTTTGTACATGGGAGAAGGAGGTTCTCGCTGACCAGCAGCTCTGTATTCAGGAGGGGAACTCCAGTCTGGACTAAGAGGACCCAGAGTCTCCACAGATTAAAGAACAGGAGGAAGAGCAGCTTGTACTAAAGCAGGAGACTGATACCTTTATGTTGACTCCTATGTGTGTGACCACCAGCTCCTCTCTTCCAACCATCTTGTAGCTGAGGATCAAGAAATGCTGATCCAAATCCAAAGAACAGACATCCCAAACGCAGAAGTCACAGTAGCAAGCTATACAACTCTACCATGTCAAAAAATACTCTGATATACTACTGAGTAATACTCACAAAGGtaaaaagtctttaaaatgtGACGAATGTGGCAAAGCTTTTATCTGTTTGTCAAAATGTAAAGCACActtgagaatccacacaggtgagaagcatTTGTGTGTGAAACATGGGAAAGATTTCATACAGAGTGGTCAATTGAAATAACACGTAAGAACGCACACAGGCGAGAAGCCATATTTGTACAAAACATGTGGGAAAAATTTCAGAGGTGGCAGTGCCTTGAAGGTCCACATGAGAatgcacacaggtgagaagcagTATACTTGTGAAACATGTGGGAGAGCTTTCAGACAGGGTGGTGAATTGATACTCCACATGAGAAtacacacaggtgagaagccatTTGTTTGCAGCACCTGTGGGAAAAGATTCAGTCTGACATATGAATTGAAAAGCCATACAAGAATCCATACAGGTGAAAAACCATGTTTGTGCAAAACATGTGAGAGAGGTTTCAGAATGAGTCGTGACTTGGCAGCACACAGGAGAAGAACCAGTGAAAATATATTGTTGTAAGGAAGTAGTACATTGTCAACAATGCTATGAAGTTTTGGTGAACTCACATCGTTTTATTTCCCTTCATATTACAGCattattgacatttttgttaGCAACAGTATCTCTTTGAAAAGTCTTTGTTGCACAGTGAGTTTATAGTTCCTACAAATGTTTGACCTGCTAAAtgaatattgttttttaaaacatttcatacaCCACCATGTCCACCTCAGTTATGAGTGGATTGTAAAAagggctttattggcatgaaagtttcaaaaacaatgttgccaaagcatcaaaATACAATTTGTCCAAATATCCAGACAGTACACAATAAACAGTATTATGAACATTAACACAACATCCTGCCaactagttgttttttttgtctgaaacatgtaatttaatttgatatttatatattttgtatttgcatCAACTTGATATAATTTTTAGTTGTTTTAGGTTTTAGAGGTGACACACcatcatacattttaaatgatgtatTATATGGTAATAGAAACGATCAGTGCCCAATGGAAGGTGGGCAacaaaatgctgttttctcatcttatgtattgtattttaacaaTAAATTGCCATATGTTTAATAACATTTTGCATGCAGAGGAAATAGTTCAAAAGGACATCAGTTAAATGTAGTAGTCCCCAttccaagaaaaaaataactcaaTTCCACTGTTGGAACTTTAGTGTGACATCCAGCAGAAGAAAACAACACAAGCGCAAGTAGCGATATCAGCTGTATTATCCGCAAAATGTACTTACGGAATCAAAAGGCAAGAGGCTACCACTTTTAAGATGGCTGTGTGACCATGGCTGTGGCCATTAAAACATGTAAGAGCATTTCATTGTTGTAGTTTGTCAGTGTGGTAGATAAGTAGTATAGTACTGCATTATATATAAgcatatatgtatttatatactgtataaaaagtAACTATAAGTGttgaataaatgtagtggagtaaaaagtacaatatttcctctGAAATGTAAAAGTTATAGTAGAAGTAGAATGAaccataaaatggaaatactggAAGTACCAGTATGTCAAATTGTACTGTTAAACAGtatttcacaaaaataaaatgtactttgttacattcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86357 False 1327 lncRNA 0.40 2 25548151 25551497
XR_005639499.1 True 2222 lncRNA 0.37 2 25548023 25552264

Neighbor

gene id symbol gene type direction distance location
sema6a sema6a,LOC102790561 coding upstream 102883 25336024 ~ 25445140 (+)
hsd17b4 hsd17b4 coding upstream 288854 25233215 ~ 25259169 (+)
atxn2 atxn2 coding upstream 408235 25107957 ~ 25139788 (+)
ostf1 ostf1 coding upstream 459377 25080307 ~ 25088646 (+)
LOC120560335 LOC104920830,LOC101074081,LOC103362722,LOC101475228,LOC102784348,LOC101160076 coding upstream 524335 25019069 ~ 25023688 (+)
cdo1 cdo1,LOC102791980 coding downstream 15440 25567704 ~ 25573107 (+)
LOC120560598 NA coding downstream 48892 25601156 ~ 25622051 (+)
spef2 LOC104950669 coding downstream 73740 25626004 ~ 25646477 (+)
LOC120560771 ugt3a2,LOC108233592 coding downstream 94851 25647115 ~ 25653156 (+)
LOC120560772 pdxp,LOC102792570 coding downstream 103421 25655685 ~ 25659461 (+)
G64489 NA non-coding upstream 41455 25506164 ~ 25506568 (+)
G64450 NA non-coding upstream 245103 25259716 ~ 25302920 (+)
G64392 NA non-coding upstream 337853 25209924 ~ 25210170 (+)
LOC120560056 NA non-coding upstream 507125 25034709 ~ 25040898 (+)
G64287 NA non-coding upstream 655506 24876562 ~ 24892517 (+)
G64495 NA non-coding downstream 675 25552939 ~ 25555781 (+)
G64578 NA non-coding downstream 110763 25663027 ~ 25663385 (+)
G64592 NA non-coding downstream 144799 25697063 ~ 25699784 (+)
LOC120560927 NA non-coding downstream 161646 25713910 ~ 25747889 (+)
G64607 NA non-coding downstream 236193 25788457 ~ 25795441 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other upstream 710575 24823718 ~ 24837448 (+)
prxl2c aaed1 other upstream 724957 24821314 ~ 24823066 (+)
G64108 NA other upstream 1854732 23692662 ~ 23693291 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other upstream 1985738 23487967 ~ 23562285 (+)
G63905 NA other upstream 2617818 22929899 ~ 22930205 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other downstream 132700 25684964 ~ 25696576 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other downstream 362015 25914279 ~ 25915577 (+)
LOC120560359 NA other downstream 373823 25926087 ~ 25928596 (+)
nsd3 whsc1l1 other downstream 806856 26359120 ~ 26383843 (+)
G64814 cldn5,LOC103357131 other downstream 860605 26412869 ~ 26414597 (+)

Expression


Co-expression Network