LOC120560359


Basic Information

Item Value
gene id LOC120560359
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25926087 ~ 25928596 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU86549
aaagaaagagagactgctgtccggaggataatcagttgagatcgtgtgtgtgcgtccttgagaactCATGTGGATTGACTTGCTACCACTGTCAAGGCAAGAACTGCGCAGACAAGTTAACTTGTCCTATTGGCTTAGACCGTTGTTCCTCCATCGAATTGAACGGTGTCATTGTGAAGAGCTGCATGACGAGTGAACTATGTCGCAGCCCCATAAAGTGCTGTGAGAGCGACTTGTGTAACAGCGCCGTACCCACTGGTTCCAGTGTCCTCCTCCTGCTGGTTTCCTCAGCCATCATCACACTCTTTCTCTAAGGCTCTGGAGCAGCTACAGCTTAAGAACACTTCTCTTACTCAATTGGTACAACTCAAGAAGAATAACCACATTTTCAAGATGTAAAAGCTGTGAATGACTGCAGATCAatgtttgtttaataaaaacacaatatgaAAAACAC
>XM_039802758.1
ctgctgtccggaggataatcagttgagatcgtgtgtgtgcgtccttgagaactTCAGATGTCTACATGATCGACTGGTGGTCGACCAAAGTGATCACTTTGGGAGGAGCCGTTGGGAAGATAAAACTGAAAGAAGACTAGCTTGGACTAGTTCTTTTCTCAGGGTTGGACAAAAGTCTAATTTTCTCTCCGTTCACGATGCAGTTTTATGGAGCTCTGATCCTGTTTTTGACTCTGTCTGCAGCATGTGGATTGACTTGCTACCACTGTCAAGGCAAGAACTGCGCAGACAAGTTAACTTGTCCTATTGGCTTAGACCGTTGTTCCTCCATCGAATTGAACGGTGTCATTGTGAAGAGCTGCATGACGAGTGAACTATGTCGCAGCCCCATAAAGTGCTGTGAGAGCGACTTGTGTAACAGCGCCGTACCCACTGGTTCCAGTGTCCTCCTCCTGCTGGTTTCCTCAGCCATCATCACACTCTTTCTCTAAGGCTCTGGAGCAGCTACAGCTTAAGAACACTTCTCTTACTCAATTGGTACAACTCAAGAAGAATAACCACATTTTCAAGATGTAAAAGCTGTGAATGACTGCAGATCAatgtttgtttaataaaaacacaatatgaAAAACACCATA

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU86549 False 457 lncRNA 0.45 3 25926087 25928592
XM_039802758.1 True 638 mRNA 0.45 4 25926100 25928596

Neighbor

gene id symbol gene type direction distance location
LOC120559963 LOC100704176,LOC102304428,LOC102794704,LOC102195896,LOC101487439 coding upstream 142050 25774378 ~ 25784037 (+)
LOC120560092 LOC101464110,LOC102227132,LOC106956827,LOC106513657,LOC105931341,LOC103374419,LOC101075487 coding upstream 163181 25757088 ~ 25762906 (+)
LOC120560772 pdxp,LOC102792570 coding upstream 266626 25655685 ~ 25659461 (+)
LOC120560771 ugt3a2,LOC108233592 coding upstream 272931 25647115 ~ 25653156 (+)
spef2 LOC104950669 coding upstream 279610 25626004 ~ 25646477 (+)
LOC120560362 izumo1 coding downstream 11180 25939776 ~ 25949337 (+)
dusp2 dusp2,LOC106948589,LOC103145864,LOC102224120,LOC103470063 coding downstream 20858 25949454 ~ 25952579 (+)
adra2b LOC104943288,LOC102796455,LOC102308546,LOC103357149,LOC102212827,LOC100694621,LOC101484392,LOC105931407 coding downstream 30203 25958799 ~ 25964487 (+)
gpat2 LOC101483931,LOC102796756,LOC102305881,LOC102195621 coding downstream 52312 25980908 ~ 26161608 (+)
zgc:152830 LOC103357146 coding downstream 245628 26174224 ~ 26180116 (+)
G64663 NA non-coding upstream 3699 25922163 ~ 25922388 (+)
G64658 NA non-coding upstream 7994 25917765 ~ 25918093 (+)
G64657 NA non-coding upstream 8611 25917187 ~ 25917476 (+)
G64643 NA non-coding upstream 9195 25915944 ~ 25916892 (+)
LOC120560032 NA non-coding upstream 82994 25839136 ~ 25843093 (+)
G64677 NA non-coding downstream 328 25928924 ~ 25929158 (+)
G64764 NA non-coding downstream 375254 26303850 ~ 26321956 (+)
G64834 NA non-coding downstream 583869 26512465 ~ 26514759 (+)
G64836 polb non-coding downstream 603156 26531752 ~ 26533420 (+)
G64838 polb non-coding downstream 606416 26535012 ~ 26537695 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other upstream 10510 25914279 ~ 25915577 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other upstream 229511 25684964 ~ 25696576 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other upstream 1088639 24823718 ~ 24837448 (+)
prxl2c aaed1 other upstream 1103021 24821314 ~ 24823066 (+)
G64108 NA other upstream 2232796 23692662 ~ 23693291 (+)
nsd3 whsc1l1 other downstream 430524 26359120 ~ 26383843 (+)
G64814 cldn5,LOC103357131 other downstream 484273 26412869 ~ 26414597 (+)
c6h22orf39 clg12h22orf39 other downstream 565688 26494284 ~ 26496987 (+)
cltcl1 LOC100691387,LOC103359525 other downstream 685641 26614237 ~ 26644167 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other downstream 716065 26644661 ~ 26661895 (+)

Expression


Co-expression Network