LOC120560031 (LOC104941040,LOC103357154,LOC102795853)


Basic Information

Item Value
gene id LOC120560031
gene name LOC104941040,LOC103357154,LOC102795853
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25914279 ~ 25915577 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU86550
TCTGAAAGAAGTTGGTATAAAAGAAGAAGGCTTTTCTCCAGTTCTCCTCTCACTTGGGTGATTAACAATCTGTTTTTCTCTCCGTTCACGATGCAGCTTTATGGAGCTCTGATCCTGTTTATGACTCTGTCTACAGCATGTGGATTAAGATGTTACACATGCACAGCCACTGATCCTAAATCCTGCACTGACACCAAATCTTGTCCTGTCATCTTCAACCGCTGTTTCTCTCTCAGAATAGACGGTTATAACATGGTTACCAAGGGCTGCCAAACCTCCTTAGCATGCGTAGGTGCCATGGCTTGCTGTGAAGGGAACTTGTGTAACAGTGTCATACCAACTGGTCCCTGTGGCATCCTCCTGCTGGTATCTTCAGCCATCATCACACTCTTCCTGTGAGGCTCTGGGAGTTTGTTATTTCCATGCTGCACTTTTTTCTGACTCAATTTGTACAACTGAAGAAGAATAAAG
>XM_039802136.1
ACAGCGGTGCATGGCTGTCTCAGGGATAATGTGGTCACTTTAGGTGTGACATTATTCAGGTCACATGGGAGAAGGCTTTGTGAGGAAATGCAAATGTTGAAGTTCTGAAAGAAGTTGGTATAAAAGAAGAAGGCTTTTCTCCAGTTCTCCTCTCACTTGGGTGATTAACAATCTGTTTTTCTCTCCGTTCACGATGCAGCTTTATGGAGCTCTGATCCTGTTTATGACTCTGTCTACAGCATGTGGATTAAGATGTTACACATGCACAGCCACTGATCCTAAATCCTGCACTGACACCAAATCTTGTCCTGTCATCTTCAACCGCTGTTTCTCTCTCAGAATAGACGGTTATAACATGGTTACCAAGGGCTGCCAAACCTCCTTAGCATGCGTAGGTGCCATGGCTTGCTGTGAAGGGAACTTGTGTAACAGTGTCATACCAACTGGTCCCTGTGGCATCCTCCTGCTGGTATCTTCAGCCATCATCACACTCTTCCTGTGAGGCTCTGGGAGTTTGTTATTTCCATGCTGCACTTTTTTCTGACTCAATTTGTACAACTGAAGAAGAATAAAGAACTTCTCACTGCAAAAACTCAATTTCTCAGTAAGTGAGATAATCATA

Function

NR:

description
PREDICTED: prostate stem cell antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86550 False 471 TUCP 0.44 3 25914382 25915529
XM_039802136.1 True 622 mRNA 0.44 3 25914279 25915577

Neighbor

gene id symbol gene type direction distance location
LOC120559963 LOC100704176,LOC102304428,LOC102794704,LOC102195896,LOC101487439 coding upstream 130242 25774378 ~ 25784037 (+)
LOC120560092 LOC101464110,LOC102227132,LOC106956827,LOC106513657,LOC105931341,LOC103374419,LOC101075487 coding upstream 151373 25757088 ~ 25762906 (+)
LOC120560772 pdxp,LOC102792570 coding upstream 254818 25655685 ~ 25659461 (+)
LOC120560771 ugt3a2,LOC108233592 coding upstream 261123 25647115 ~ 25653156 (+)
spef2 LOC104950669 coding upstream 267802 25626004 ~ 25646477 (+)
LOC120560362 izumo1 coding downstream 24199 25939776 ~ 25949337 (+)
dusp2 dusp2,LOC106948589,LOC103145864,LOC102224120,LOC103470063 coding downstream 33877 25949454 ~ 25952579 (+)
adra2b LOC104943288,LOC102796455,LOC102308546,LOC103357149,LOC102212827,LOC100694621,LOC101484392,LOC105931407 coding downstream 43222 25958799 ~ 25964487 (+)
gpat2 LOC101483931,LOC102796756,LOC102305881,LOC102195621 coding downstream 65331 25980908 ~ 26161608 (+)
zgc:152830 LOC103357146 coding downstream 258647 26174224 ~ 26180116 (+)
LOC120560032 NA non-coding upstream 71186 25839136 ~ 25843093 (+)
G64607 NA non-coding upstream 118838 25788457 ~ 25795441 (+)
LOC120560927 NA non-coding upstream 166390 25713910 ~ 25747889 (+)
G64592 NA non-coding upstream 214495 25697063 ~ 25699784 (+)
G64578 NA non-coding upstream 250894 25663027 ~ 25663385 (+)
G64643 NA non-coding downstream 367 25915944 ~ 25916892 (+)
G64657 NA non-coding downstream 1610 25917187 ~ 25917476 (+)
G64658 NA non-coding downstream 2188 25917765 ~ 25918093 (+)
G64663 NA non-coding downstream 6586 25922163 ~ 25922388 (+)
G64677 NA non-coding downstream 13347 25928924 ~ 25929158 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other upstream 217703 25684964 ~ 25696576 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other upstream 1076831 24823718 ~ 24837448 (+)
prxl2c aaed1 other upstream 1091213 24821314 ~ 24823066 (+)
G64108 NA other upstream 2220988 23692662 ~ 23693291 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other upstream 2351994 23487967 ~ 23562285 (+)
LOC120560359 NA other downstream 10510 25926087 ~ 25928596 (+)
nsd3 whsc1l1 other downstream 443543 26359120 ~ 26383843 (+)
G64814 cldn5,LOC103357131 other downstream 497292 26412869 ~ 26414597 (+)
c6h22orf39 clg12h22orf39 other downstream 578707 26494284 ~ 26496987 (+)
cltcl1 LOC100691387,LOC103359525 other downstream 698660 26614237 ~ 26644167 (+)

Expression


Co-expression Network