c6h22orf39 (clg12h22orf39)


Basic Information

Item Value
gene id c6h22orf39
gene name clg12h22orf39
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26494284 ~ 26496987 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU86790
ATTGCTAGCGTAGCTAGCAATGGACCGGTCTGGAGAAGCAGCGTGGAGGCCGCCCCGGTCCTGTGATGACTATTGGAGTGAATTCAGACATTGCAAAAGCTTGAGGAATTGTTTTCACCACTATTACACTTATGGTACGTCCCCATCTTGCAAGCAGTGGAAAGAGGACTACCATAACTGCAAAGAGTGGGAGAAACACAGAGGCGCCGAGGCCAAGGACGCCTTGCAGAAGAGTGAAAGGAACAGAGTGGCAGAGCAGAGAAACTTCACCCCAGTATGGGAACTGAGGCGAGACCCTCCCAGAGACTGGCACATGCCCTTGAACCAGGAAAAGCCTCAGGACTCCTGAACTGTCACTATTAATCTGCCATCTGTTCCATGGTGGCCAAAGTAAAATGAAGATTTGAGAATTTAACAAAATCGTTGAGAGCCACTTGCTGGAGAGACAGGGCATCACTCATTGCCATCTCAAATTGTATTTAGTGAGCTTCTGTTTGAAAACAGATGTTAGCGGCAGCCTCTAGTGGCCAATGATGAGTATGACAGCATCTATTCAACCAGAGAATTACAAAGGCAGTGTTGTTTTTCCCGTCATAAATTATTGGTTCTCCAAAGCTTGTGTAAACTGAAGCACAAAGGCTGACTGCACATACAGACTCACTGTAAATGAGTTTTAAGATTaaatgcctttttttgtttagtCTAAGAAAAGGAATATTAGGTTAAAATATGTGCAATGGAAACATTTCATGTATTCCATCTAAGTAATGAAGGACCTGTCATGTGTTGTTTTGATAAGGGTTAAATTAAAAATTGCTGTTTCACAAGAATGTACTAACACCTTTGATGGCATCAAGCAGGAGAGTTGGCCCTAGGACTGTAAAAACCTTATTCTCTTTAACCTGTGCTGTTGATACTCCTCTGTGatgaatatattaaatatattattgatgcaataatgacaaaaaatggCTTTACAGTTTCAACCCATACAGAGTTATGCATTAGCAGTTTTCTGCCTTATGTAATTGATTATGGCTTTAACCT
>TU86791
ATTGCTAGCGTAGCTAGCAATGGACCGGTCTGGAGAAGCAGCGTGGAGGCCGCCCCGGTCCTGTGATGACTATTGGAGTGAATTCAGACATTGCAAAAGCTTGAGGAATTGTTTTCACCACTATTACACTTATGGTACGTCCCCATCTTGCAAGCAGTGGAAAGAGGACTACCATAACTGCAAAGAGTGGGAGAAACACAGAGGCGCCGAGGCCAAGGACGCCTTGCAGAAGAGTGAAAGGAACAGAGTGGCAGAGCAGAGAAACTTCACCCCAGTATGGGAACTGAGGCGAGACCCTCCCAGAGACTGGCACATGCCCTTGAACCAGGAAAAGCCTCAGGACTCCTGAACTGTCACTATTAATCTGCCATCTGTTCCATGGTGGCCAAAGTAAAATGAAGATTTGAGAATTTAACAAAATCGTTGAGAGCCACTTGCTGGAGAGACAGGGCATCACTCATTGCCATCTCAAATTGTATTTAGTGAGCTTCTGTTTGAAAACAGATGTTAGCGGCAGCCTCTAGTGGCCAATGATGAGTATGACAGCATCTATTCAACCAGAGAATTACAAAGGCAGTGTTGTTTTTCCCGTCATAAATTATTGGTTCTCCAAAGCTTGTGTAAACTGAAGCACAAAGGCTGACTGCACATACAGACTCACTGTAAATGAGTTTTAAGATTaaatgcctttttttgtttagtCTAAGAAAAGGAATATTAGGTTAAAATATGTGCAATGGAAACATTTCATGTATTCCATCTAAGTAATGAAGGACCTGTCATGTGTTGTTTTGATAAGGGTTAAATTAAAAATTGCTGTTTCACAAGAATGTACTAACACCTTTGATGGCATCAAGCAGGAGAGTTGGCCCTAGGACTGTAAAAACCTTATTCTCTTTAACCTGTGCTGTTGATACTCCTCTGTGatgaatatattaaatatattattgatgcaataatgacaaaaaatggCTTTACAGTTTCAACCC
>TU86793
ATTGCTAGCGTAGCTAGCAATGGACCGGTCTGGAGAAGCAGCGTGGAGGCCGCCCCGGTCCTGTGATGACTATTGGAGTGAATTCAGACATTGCAAAAGCTTGAGGAATTGTTTTCACCACTATTACACTTATGGTACGTCCCCATCTTGCAAGCAGTGGAAAGAGGACTACCATAACTGCAAAGAGTGGGAGAAACACAGAGGCGCCGAGGCCAAGGACGCCTTGCAGAAGAGTGAAAGGAACAGAGTGGCAGAGCAGAGAAACTTCACCCCAGTATGGGAACTGAGGCGAGACCCTCCCAGAGACTGGCACATGCCCTTGAACCAGGAAAAGCCTCAGGACTCCTGAACTGTCACTATTAATCTGCCATCTGTTCCATGGTGGCCAAAGTAAAATGAAGATTTGAGAATTTAACAAAATCGTTGAGAGCCACTTGCTGGAGAGACAGGGCATCACTCATTGCCATCTCAAATTGTATTTAGTGAGCTTCTGTTTGAAAACAGATGTTAGCGGCAGCCTCTAGTGGCCAATGATGAGTATGACAGCATCTATTCAACCAGAGAATTACAAAGGCAGTGTTGTTTTTCCCGTCATAAATTATTGGTTCTCCAAAGCTTGTGTAAACTGAAGCACAAAGGCTGACTGCACATACAGACTCACTGTAAATGAGTTTTAAGATTaaatgcctttttttgtttagtCTAAGAAAAGGAATATTAGGTTAAAATATGTGCAATGGAAACATTTCATGTATTCCATCTAAGTAATGAAGGACCTGTCATGTGTTGTTTTGATAAGGGTTAAATTAAAAATTGCTGTTTCACAAGAATGTACTAACACCTTTGATGGCATCAAGCAGGAGAGTTGGCCCTAGGACTGTAAAAACCTTATTCTCTTTAACCTGTGCTGTTGATACTCCTC
>TU86797
ATTGCTAGCGTAGCTAGCAATGGACCGGTCTGGAGAAGCAGCGTGGAGGGTAATTTATCGTAACATTATACTCCGCCCCGGTCCTGTGATGACTATTGGAGTGAATTCAGACATTGCAAAAGCTTGAGGAATTGTTTTCACCACTATTACACTTATGGTACGTCCCCATCTTGCAAGCAGTGGAAAGAGGACTACCATAACTGCAAAGAGTGGGAGAAACACAGAGGCGCCGAGGCCAAGGACGCCTTGCAGAAGAGTGAAAGGAACAGAGTGGCAGAGCAGAGAAACTTCACCCCAGTATGGGAACTGAGGCGAGACCCTCCCAGAGACTGGCACATGCCCTTGAACCAGGAAAAGCCTCAGGACTCCTGAACTGTCACTATTAATCTGCCATCTGTTCCATGGTGGCCAAAGTAAAATGAAGATTTGAGAATTTAACAAAATCGTTGAGAGCCACTTGCTGGAGAGACAGGGCATCACTCATTGCCATCTCAAATTGTATTTAGTGAGCTTCTGTTTGAAAACAGATGTTAGCGGCAGCCTCTAGTGGCCAATGATGAGTATGACAGCATCTATTCAACCAGAGAATTACAAAGGCAGTGTTGTTTTTCCCGTCATAAATTATTGGTTCTCCAAAGCTTGTGTAAACTGAAGCACAAAGGCTGACTGCACATACAGACTCACTGTAAATGAGTTTTAAGATTaaatgcctttttttgtttagtCTAAGAAAAGGAATATTAGGTTAAAATATGTGCAATGGAAACATTTCATGTATTCCATCTAAGTAATGAAGGACCTGTCATGTGTTGTTTTGATAAGGGTTAAATTAAAAATTGCTGTTTCACAAGAATGTACTAACACCTTTGATGGCATCAAGCAGGAGAGTTGGCCCTAGGACTGTAAAAACCTTATTCTCTTTAACCTGTGCTGTTGATACTCCTCTGTGatgaatatattaaatatattattgatgcaataatgacaaaaaatggCTTTACAGTTTCAACCCATACAGAGTTATGCATTAGCAGTTTTCTGCCTTATGTAATTGATTATGGCTTTAACCTTAACACAACTGAAATTATTCTAAACAACTTggatcaattaaaaaaaaaaaaagtagatttttattttcagcTTCAGTTATGTGTTATACAGAGATGTgaatgtgggggggggggggagaatttaattcataatttcCATGAATACAGAGAAACAACTGACGGGACTATACagttcaagaaaaaaaaaagggtcagcAAAGTGTCCTTCACACCTACACATGCAGGCTTTTAAAAGGCTGCATCTTGCCTTATTGGATCATGACAAATGCAGGCTGCCCCCGCAGCCCTTCCCTGTCGATCACTGTGTGTAGACTTTAGTGATGTTGTTGTATTTCCCATCAGGAGCTTCATACTTGGTCTTTGGTGGTGTGTAGGCAGGACCTTCATGAGTGAAGGGAAACAGAAGGGGGTCTGGCTTTAGTGCTGCCTGGTACAGCTCCTCAGACTCTAACTTCAGCTCCTCCAGCGCCTCCCTCTGTGCCTCTAGAGCAAGTTCAACAGCCTCCACTTCAGCAATGTGCTGCTCCTGCAAGAACAAAGACCGAAGAGCACATCAAATATAGCCCATTAAGTGTAAATGATGAAGGGCAGAGGTCAGAGG
>XM_039804411.1
TGTAAAACTGTGTGTTAgcgcttttattgtgaaatgaaATTAACCGGAAGTATTGCTAGCGTAGCTAGCAATGGACCGGTCTGGAGAAGCAGCGTGGAGGCCGCCCCGGTCCTGTGATGACTATTGGAGTGAATTCAGACATTGCAAAAGCTTGAGGAATTGTTTTCACCACTATTACACTTATGGTACGTCCCCATCTTGCAAGCAGTGGAAAGAGGACTACCATAACTGCAAAGAGTGGGAGAAACACAGAGGCGCCGAGGCCAAGGACGCCTTGCAGAAGAGTGAAAGGAACAGAGTGGCAGAGCAGAGAAACTTCACCCCAGTATGGGAACTGAGGCGAGACCCTCCCAGAGACTGGCACATGCCCTTGAACCAGGAAAAGCCTCAGGACTCCTGAACTGTCACTATTAATCTGCCATCTGTTCCATGGTGGCCAAAGTAAAATGAAGATTTGAGAATTTAACAAAATCGTTGAGAGCCACTTGCTGGAGAGACAGGGCATCACTCATTGCCATCTCAAATTGTATTTAGTGAGCTTCTGTTTGAAAACAGATGTTAGCGGCAGCCTCTAGTGGCCAATGATGAGTATGACAGCATCTATTCAACCAGAGAATTACAAAGGCAGTGTTGTTTTTCCCGTCATAAATTATTGGTTCTCCAAAGCTTGTGTAAACTGAAGCACAAAGGCTGACTGCACATACAGACTCACTGTAAATGAGTTTTAAGATTaaatgcctttttttgtttagtCTAAGAAAAGGAATATTAGGTTAAAATATGTGCAATGGAAACATTTCATGTATTCCATCTAAGTAATGAAGGACCTGTCATGTGTTGTTTTGATAAGGGTTAAATTAAAAATTGCTGTTTCACAAGAATGTACTAACACCTTTGATGGCATCAAGCAGGAGAGTTGGCCCTAGGACTGTAAAAACCTTATTCTCTTTAACCTGTGCTGTTGATACTCCTCTGTGatgaatatattaaatatattattgatgcaataatgacaaaaaa

Function

NR:

description
UPF0545 protein C22orf39 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86790 False 1047 TUCP 0.41 3 26494335 26496386
TU86791 False 989 TUCP 0.42 3 26494335 26496328
TU86793 False 922 TUCP 0.43 3 26494335 26496261
TU86797 True 1671 lncRNA 0.42 3 26494335 26496987
XM_039804411.1 False 1020 mRNA 0.41 3 26494284 26496308

Neighbor

gene id symbol gene type direction distance location
ufd1l ufd1l coding upstream 720 26489321 ~ 26493564 (+)
dhx37 dhx37 coding upstream 5883 26476188 ~ 26488401 (+)
gp1bb gp1bb,LOC102779926 coding upstream 18966 26472774 ~ 26475318 (+)
sept5a sept5,LOC102226618 coding upstream 23582 26459626 ~ 26470702 (+)
zgc:63587 LOC101064433 coding upstream 46771 26415890 ~ 26447513 (+)
acaa2 acaa2 coding downstream 2586 26499573 ~ 26505004 (+)
rpl6 rpl6 coding downstream 9658 26506645 ~ 26511245 (+)
vdac3 vdac3 coding downstream 46039 26543026 ~ 26553731 (+)
plat plat coding downstream 88793 26585780 ~ 26597313 (+)
si:dkeyp-117b11.1 NA coding downstream 101008 26597995 ~ 26607634 (+)
G64764 NA non-coding upstream 172328 26303850 ~ 26321956 (+)
G64677 NA non-coding upstream 565126 25928924 ~ 25929158 (+)
G64663 NA non-coding upstream 571896 25922163 ~ 25922388 (+)
G64658 NA non-coding upstream 576191 25917765 ~ 25918093 (+)
G64657 NA non-coding upstream 576808 25917187 ~ 25917476 (+)
G64834 NA non-coding downstream 15478 26512465 ~ 26514759 (+)
G64836 polb non-coding downstream 34765 26531752 ~ 26533420 (+)
G64838 polb non-coding downstream 38025 26535012 ~ 26537695 (+)
G64839 NA non-coding downstream 41281 26538268 ~ 26538541 (+)
G64840 NA non-coding downstream 41671 26538658 ~ 26540223 (+)
G64814 cldn5,LOC103357131 other upstream 79687 26412869 ~ 26414597 (+)
nsd3 whsc1l1 other upstream 110441 26359120 ~ 26383843 (+)
LOC120560359 NA other upstream 565688 25926087 ~ 25928596 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other upstream 578707 25914279 ~ 25915577 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other upstream 797708 25684964 ~ 25696576 (+)
cltcl1 LOC100691387,LOC103359525 other downstream 117250 26614237 ~ 26644167 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other downstream 147674 26644661 ~ 26661895 (+)
ndufs4 ndufs4 other downstream 515223 27012210 ~ 27039599 (+)
G65084 lipg other downstream 708247 27205234 ~ 27370959 (+)
mboat4 NA other downstream 2348639 28845626 ~ 28849471 (+)

Expression


Co-expression Network