G64838 (polb)


Basic Information

Item Value
gene id G64838
gene name polb
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26535012 ~ 26537695 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU86813
CAGTGCGACATAGATCATGTATTACCACGCCACAACACCCACCTTTTCCAGTTTCCGTAGTTTGCCAGTTTGCAGGAACTCATCAATCTTTTCAGCTATTTTAGCTCCAACACCATCCAGTTTCTTGGCCTCTTCGCCACTTTTGATTTTGTTAGGGTACTTGGAGATGGTAGATGCTGCTTTCCTGTAAGCATTGTACTTGTGTATTGCCCTGTTGACGTTTTTCTCGTAATTGGCCAGCTCGACAAGAAAGTCTGTTATTCCCTCATTTAGGGATTCCTGTGGCGCTTTCCTCTTGCTCATTGTTACTTTGGCAAGTTCTCTTAATGTCCGTTTTCAACTTAAACGGCCTTGTATGTATGCATGAAAAGTTAAAACCTATTTGTAGATTAGGCTAGCCTCTAACTAGCACATTAGCTAGCTCAAGCTGAACAATGACCAAAGGACGTAGAGG
>TU86814
ATGAGCTGGTGTCATCGTTACGGATCTTTTCCAGTTTCCGTAGTTTGCCAGTTTGCAGGAACTCATCAATCTTTTCAGCTATTTTAGCTCCAACACCATCCTGTTAAAATGTGAGAACAAACATGAGGGTGCTGAATAGTGCGATCTGCAGCAGTTATGTAAGATGGACAGAGTAGTACTGTT

Function

symbol description
polb Enables DNA-directed DNA polymerase activity. Predicted to be involved in base-excision repair and double-strand break repair via nonhomologous end joining. Predicted to act upstream of or within DNA biosynthetic process; DNA repair; and DNA replication. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human POLB (DNA polymerase beta).

NR:

description
PREDICTED: DNA polymerase beta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86813 True 454 lncRNA 0.43 4 26535108 26537695
TU86814 False 183 lncRNA 0.42 2 26535012 26535307

Neighbor

gene id symbol gene type direction distance location
rpl6 rpl6 coding upstream 23767 26506645 ~ 26511245 (+)
acaa2 acaa2 coding upstream 30008 26499573 ~ 26505004 (+)
ufd1l ufd1l coding upstream 41448 26489321 ~ 26493564 (+)
dhx37 dhx37 coding upstream 46611 26476188 ~ 26488401 (+)
gp1bb gp1bb,LOC102779926 coding upstream 59694 26472774 ~ 26475318 (+)
vdac3 vdac3 coding downstream 5331 26543026 ~ 26553731 (+)
plat plat coding downstream 48085 26585780 ~ 26597313 (+)
si:dkeyp-117b11.1 NA coding downstream 60300 26597995 ~ 26607634 (+)
si:dkey-178e17.3 sbspon,LOC103359527 coding downstream 129038 26666733 ~ 26679998 (+)
pi4kab pi4ka coding downstream 149637 26687332 ~ 26719116 (+)
G64836 polb non-coding upstream 1592 26531752 ~ 26533420 (+)
G64834 NA non-coding upstream 20253 26512465 ~ 26514759 (+)
G64764 NA non-coding upstream 213056 26303850 ~ 26321956 (+)
G64677 NA non-coding upstream 605854 25928924 ~ 25929158 (+)
G64663 NA non-coding upstream 612624 25922163 ~ 25922388 (+)
G64839 NA non-coding downstream 573 26538268 ~ 26538541 (+)
G64840 NA non-coding downstream 963 26538658 ~ 26540223 (+)
G64841 enkd1,LOC102781555 non-coding downstream 2720 26540415 ~ 26540636 (+)
G64893 NA non-coding downstream 34549 26572244 ~ 26580813 (+)
G64930 NA non-coding downstream 125072 26662767 ~ 26663526 (+)
c6h22orf39 clg12h22orf39 other upstream 38025 26494284 ~ 26496987 (+)
G64814 cldn5,LOC103357131 other upstream 120415 26412869 ~ 26414597 (+)
nsd3 whsc1l1 other upstream 151169 26359120 ~ 26383843 (+)
LOC120560359 NA other upstream 606416 25926087 ~ 25928596 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other upstream 619435 25914279 ~ 25915577 (+)
cltcl1 LOC100691387,LOC103359525 other downstream 76542 26614237 ~ 26644167 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other downstream 106966 26644661 ~ 26661895 (+)
ndufs4 ndufs4 other downstream 474515 27012210 ~ 27039599 (+)
G65084 lipg other downstream 667539 27205234 ~ 27370959 (+)
mboat4 NA other downstream 2307931 28845626 ~ 28849471 (+)

Expression


Co-expression Network