si:dkey-178e17.1 (slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904)


Basic Information

Item Value
gene id si:dkey-178e17.1
gene name slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26644661 ~ 26661895 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU86927
AGCTTTTTGTAGATTTGACTGAGTATTTTTCCCGTAGTTATGCAGGATAAAGGAACATTTATCAGCCTTTTCCTCAGACCGCGGTGTCTGGCGGCAGCGGCGCCGGCCGGGAAAGCGAAATTGACTCACCCGGGAAAGGCGATTCTGGCAGgtgGAATTGCAGGTGGCATAGAGATCTGCATCACCTTCCCAACAGAGTACGTCAAGACCCAGTTACAACTGGATGAGAAGGCCAATCCACCCAAATACAGAGGAATAGGTGACTGTGTGAAACAGACGGTACAGGGTCATGGTGTTAAAGGACTGTACAGAGGACTCAGCTCACTGGTGTATGGATCCATACCCAAATCTGCAGTCAGCctcccttctttctttcctttttagtCTCCAGCCAACTCTTTTCCCTGTCCTTTACCTCTTCTTCTCATCTGCACAACTGACCTTGTAGAAAGACCTGCTAATGAAGATTGGGCAGCACTCTGCTGCTGTCCAGAATGACTCATCTCCAACTGTGGATGTCGGCCAAAACACGATGTGTCATATTCTAACGGTGAAGTTTTGTCCACTTGTTAAATGGGTTGGGG
>XM_039804533.1
GTTGTTGAAATTCACTCGCTTCACTGAGAAATAGCCAAACTCCACGCAGCAGCAGAAAACGGAGACAACTCTTCGGTCCGCACATTATTTCCGGTTTGCTATGCTTTGCTTTCTACGCACTCATGTCGTGATACAGCGTTACCATGGTTACAAATAACATCTGTTGGAGCTAGAACGTCCCAACTTCCTTGAACAGTCCCAGCGTACACTGTCAACAGACACCCGCTGGAGTCTCCGGACGCATCTGAGCTCACCTGCATCCAAGCGCACCAGCCAGCAGACGTCCATGTGTTGCGCGCTCCAGTCGActtaaaaagaaattgcaaGCTCTACTCGGAGATAAACCTCATTATAGTGAAAGCTTTTTGTAGATTTGACTGAGTATTTTTCCCGTAGTTATGCAGGATAAAGGAACATTTATCAGCCTTTTCCTCAGACCGCGGTGTCTGGCGGCAGCGGCGCCGGCCGGGAAAGCGAAATTGACTCACCCGGGAAAGGCGATTCTGGCAGgtgGAATTGCAGGTGGCATAGAGATCTGCATCACCTTCCCAACAGAGTACGTCAAGACCCAGTTACAACTGGATGAGAAGGCCAATCCACCCAAATACAGAGGAATAGGTGACTGTGTGAAACAGACGGTACAGGGTCATGGTGTTAAAGGACTGTACAGAGGACTCAGCTCACTGGTGTATGGATCCATACCCAAATCTGCAGTCAGGTTTGGGGTGTTTGAGTTCCTCAGCAACCGTGCAAGGGATGAGTCCGGTCGACTGGACAGCACCAAAGGCCTGCTGTGTGGGCTTGGAGCTGGGGTCATGGAGGCAGTTTTGGTGGTCTGTCCCATGGAAACTGTCAAGGTTAAATTCATTCATGACCAGACTTCAGCCAACCCCAAATACAAGGGCTTCTTCCACGGAGTTAGAGAAATCATCAGGGCACAAGGAATAAAAGGGACATACCAGGGTCTCACCGCCACGGTCCTTAAACAAGGCTCCAACCAAGCTATTCGATTCTATGTGATGACCTCTCTCAAGAACTGGTACAAAGGTGATGACAACAATAAAGCTATTAATCCCTTGGTGACTGGAGTATTTGGAGCCATAGCAGGAGCAGCCAGTGTCTTTGGAAACACACCACTAGATGTCATCAAGACAAGGATGCAGGGTCTGGAAGCACATAAATATAAAAGCACACTGGACTGTGCGTTAAAGATCATGAAATATGAGGGCTTAACAGCTTTCTATAAAGGAACAGTTCCTCGGCTGGGCCGTGTGTGTCTGGATGTGGCCATAGTTTTCATCATCTATGAGGAGGTGGTGAAGGTCCTGAATACAGTCTGGAagacggactgagctactgtaCGTAGCGGTGGCTTCCTGCTTTCCAGGCATCCGACACAGATCTGAGTATCGCAGACCTCTTACGCATCATAAAAGCAAGAGGGTGAGACAGAAAGCTGAACTTAGATCTGTGTCATATGCTAACCAGGAAGTTAAAGAGCCCATAGACAGGGCTGCAGACAAGAATAAAGCCTAAAAAAAAAGCTCAGTGTCGCCCATATCTGGACAGCTGCAGTGTATGCAGTGACCAGACCAAGGTTCAATTTCAGAAGTGGAAATAACTAGTTAAAAAAAGATGCTTAAGcttgatttatgcttctgcgtaaaatctacgccgtggctacatacgtaggtacgtggagacacaaACCTACGcaggaccctacg

Function

symbol description
slc25a1 Enables citrate secondary active transmembrane transporter activity. Predicted to be involved in mitochondrial citrate transmembrane transport. Located in extracellular exosome and nucleus. Implicated in 2-hydroxyglutaric aciduria; combined D-2- and L-2-hydroxyglutaric aciduria; and congenital myasthenic syndrome.

NR:

description
PREDICTED: tricarboxylate transport protein, mitochondrial

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15100 SLC25A1, CTP; solute carrier family 25 (mitochondrial citrate transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU86927 False 584 TUCP 0.48 4 26645020 26657969
XM_039804533.1 True 1727 mRNA 0.48 9 26644661 26661895

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-117b11.1 NA coding upstream 37027 26597995 ~ 26607634 (+)
plat plat coding upstream 47348 26585780 ~ 26597313 (+)
vdac3 vdac3 coding upstream 90930 26543026 ~ 26553731 (+)
rpl6 rpl6 coding upstream 133416 26506645 ~ 26511245 (+)
acaa2 acaa2 coding upstream 139657 26499573 ~ 26505004 (+)
si:dkey-178e17.3 sbspon,LOC103359527 coding downstream 4838 26666733 ~ 26679998 (+)
pi4kab pi4ka coding downstream 25437 26687332 ~ 26719116 (+)
LOC120561052 LOC104921679,LOC106580276,LOC105940836,LOC102302829,LOC106700476 coding downstream 128303 26790198 ~ 26791064 (+)
LOC120561053 NA coding downstream 131796 26793691 ~ 26794572 (+)
LOC120561461 LOC106926604,LOC102220481,LOC108166557,LOC108233617 coding downstream 135928 26797823 ~ 26799241 (+)
G64893 NA non-coding upstream 63848 26572244 ~ 26580813 (+)
G64841 enkd1,LOC102781555 non-coding upstream 104025 26540415 ~ 26540636 (+)
G64840 NA non-coding upstream 104438 26538658 ~ 26540223 (+)
G64839 NA non-coding upstream 106120 26538268 ~ 26538541 (+)
G64838 polb non-coding upstream 106966 26535012 ~ 26537695 (+)
G64930 NA non-coding downstream 872 26662767 ~ 26663526 (+)
G64944 NA non-coding downstream 20623 26682518 ~ 26684255 (+)
G64949 btf3,LOC103470010,LOC107089645,LOC106958054,LOC106926613 non-coding downstream 99496 26761391 ~ 26829185 (+)
G64967 ykt6 non-coding downstream 231806 26893701 ~ 26896143 (+)
LOC120560738 NA non-coding downstream 236007 26897902 ~ 26899558 (+)
cltcl1 LOC100691387,LOC103359525 other upstream 494 26614237 ~ 26644167 (+)
c6h22orf39 clg12h22orf39 other upstream 147674 26494284 ~ 26496987 (+)
G64814 cldn5,LOC103357131 other upstream 230064 26412869 ~ 26414597 (+)
nsd3 whsc1l1 other upstream 260818 26359120 ~ 26383843 (+)
LOC120560359 NA other upstream 716065 25926087 ~ 25928596 (+)
ndufs4 ndufs4 other downstream 350315 27012210 ~ 27039599 (+)
G65084 lipg other downstream 543339 27205234 ~ 27370959 (+)
mboat4 NA other downstream 2183731 28845626 ~ 28849471 (+)
ubac1 ubac1 other downstream 2682685 29344580 ~ 29351756 (+)
fbxo21 fbxo21 other downstream 3524953 30186848 ~ 30212108 (+)

Expression


Co-expression Network