G64967 (ykt6)


Basic Information

Item Value
gene id G64967
gene name ykt6
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26893701 ~ 26896143 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU86978
TGGACTGGTTTCCCAGGTGCTCTGACTTTGCCACAAGATCATCcagtttctctcctctctccaacAGGCTTTCCATGGTGTTGTGCAAAATGATCTTTGTCTCATCCAGCTCTGCCTGCACTTTGGTCATTGCATCTGCTTCCCTGGGgttCTGGTATTTAGAAAGGTGAATATCCAGGGCTTTGTAGTTTATGGTTTCAGGATTACCAGAGGGCCAGTCTATACTGTCCACTTGCCTAGAGAACTCCTCTAATACCTTGTCTAGCAATGTGAAACAGACTCTCTGTGGGTATTCAGTGTCTGCAATGACTACAGCGCTCAGGTTGTCATTTCTTA

Function

symbol description
ykt6 Predicted to enable acyltransferase activity, transferring groups other than amino-acyl groups. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane; cytoplasmic vesicle membrane; and cytosol. Predicted to be integral component of membrane. Orthologous to human YKT6 (YKT6 v-SNARE homolog).

NR:

description
PREDICTED: synaptobrevin homolog YKT6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86978 True 336 lncRNA 0.46 4 26893701 26896143

Neighbor

gene id symbol gene type direction distance location
osmr NA coding upstream 5875 26877033 ~ 26887826 (+)
LOC120560731 arhgef28,LOC104956788,LOC103359538 coding upstream 16750 26837272 ~ 26876951 (+)
utp15 utp15 coding upstream 56529 26830051 ~ 26837172 (+)
LOC120561461 LOC106926604,LOC102220481,LOC108166557,LOC108233617 coding upstream 94460 26797823 ~ 26799241 (+)
LOC120561053 NA coding upstream 99129 26793691 ~ 26794572 (+)
gck gck coding downstream 5656 26901799 ~ 26907519 (+)
myl7 myl7,LOC101480470 coding downstream 12060 26908203 ~ 26910428 (+)
adamts12 adamts12 coding downstream 28385 26924528 ~ 26945467 (+)
fgf10b fgf10,LOC104956796 coding downstream 56077 26952220 ~ 26961992 (+)
paip1 paip1,LOC104941454 coding downstream 69341 26965484 ~ 26974939 (+)
G64949 btf3,LOC103470010,LOC107089645,LOC106958054,LOC106926613 non-coding upstream 64516 26761391 ~ 26829185 (+)
G64944 NA non-coding upstream 209446 26682518 ~ 26684255 (+)
G64930 NA non-coding upstream 230175 26662767 ~ 26663526 (+)
G64893 NA non-coding upstream 312888 26572244 ~ 26580813 (+)
G64841 enkd1,LOC102781555 non-coding upstream 353065 26540415 ~ 26540636 (+)
LOC120560738 NA non-coding downstream 1759 26897902 ~ 26899558 (+)
G65083 NA non-coding downstream 303806 27199949 ~ 27200190 (+)
G65106 NA non-coding downstream 482855 27378998 ~ 27379215 (+)
G65108 NA non-coding downstream 493314 27389457 ~ 27389862 (+)
G65171 NA non-coding downstream 580605 27476748 ~ 27476966 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other upstream 231806 26644661 ~ 26661895 (+)
cltcl1 LOC100691387,LOC103359525 other upstream 249534 26614237 ~ 26644167 (+)
c6h22orf39 clg12h22orf39 other upstream 396714 26494284 ~ 26496987 (+)
G64814 cldn5,LOC103357131 other upstream 479104 26412869 ~ 26414597 (+)
nsd3 whsc1l1 other upstream 509858 26359120 ~ 26383843 (+)
ndufs4 ndufs4 other downstream 116067 27012210 ~ 27039599 (+)
G65084 lipg other downstream 309091 27205234 ~ 27370959 (+)
mboat4 NA other downstream 1949483 28845626 ~ 28849471 (+)
ubac1 ubac1 other downstream 2448437 29344580 ~ 29351756 (+)
fbxo21 fbxo21 other downstream 3290705 30186848 ~ 30212108 (+)

Expression


Co-expression Network