LOC120560820


Basic Information

Item Value
gene id LOC120560820
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 30246887 ~ 30251519 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU88038
AGATCCAACAGCTCCTCGTCTTTCTTGACCTTTCTCTTAGGCTGTTGCTGCTGTGGCTGCTGCAGGGATGCGCTGCAGGCGTTGGTCATGTTTTGATACTGTCTCTTTCTCCTGGTTCTCTCCTCCTGAATCCTGTCCAGCAGGGGACTGGTCCTCCCATCCAGCAAACTACGTGCAATGGCCACATACTCAGGCTGATCCTCTGACTCTGCTGCAGCGTTTCCTCCTCCGCCAGCACATGCTTCATCCTCAATGCAACCACCTTCTTCTGATTGTGAAGGGCTACAGGCCTTGCTGAGATTGTTTAGGTCTTCAAAATACCTATTTTTGAAGTCGTTCTGGCCTGCCTGAAAACAAACATccaaggaagaggaaggagcaCACACAAGTGGCTGATCCTCTTTATTACTCGTTAGTTCTTCTTTCCAACACTCCCTGAACGCAGCAAGTTCGTCCTCGGCCATATTTTTCAGTCATCGTTGATAAAATAGTGTTATAAAGCGGTGTCGTGGGAATGTGTTAGTAATACAGATCAGTTAAGCGAAGCCATAGCTTAGCACCGACGCAACATTTGCACATGTCCTTCTCTATAAACAGTCCGAGGAGAGACAACGCGCTGCTGTACTGAAGTTCCGCAATTTTTTAATTCCGCAGTTTTATCATAGACGCGGCAATTCTCATGGATGGTGTATGATTGTGTGGCCACAACTGGCAATTGTTCTGGATATCATTGCAAGTATTTCCCATCCCATGCCAGCGGGGTGATTATATTTAAAGAATAATACAAAATGCATATTTGTACTTGTTAAAATATAGCAGACGACAACACAACGTCCCAGAACACCCGTACAACAAAAGACTCCTTTGGATCAAACCAGACTGGAGAGATTCAAGAGTTAACCATTGCATCTCTCTTTTGGGAAAAGATGATGTAAACCCCACACCATGTGACACTGTAATGAATAatacagtagagagagagaacgagagaaaggaagagaaagggggggtaggtggggggggggcgcaaACACAGTTAAGGTTTGATGAGAGAAGAAAAGGAGGGTCGTATATGTTCAAGATTTAAAGAGAGAAGACTGGGTGTTCTGTCTGAGAAAGATGTGCTGGCTGCCGATAGACCAGCCTTTGCTCCTGCCCGGTGACTCCACCTGCAGCGCCCGGCGACCCTCGCCGTGCTCGGTGGCTCAGCTGCTCGCGTCTCGCCTGCGGAGGATCGGAGACCAGCTGGAGAAAAGCTGGACGGCCAGGGAGGCGGACAGCGGCTTCAACTGTGGGGGCGGAGGGACGGTGGTGGTGACCGGGACAGGCCACTTGAAGAGCTTCCTGTGCACTGCAATACATTTGACCGTGCTCGTGCTGGTCGTCGCGAGGCGACACCTGTAGGGCGCGAGGCGACAACACCAGCAACAGATGGTGCCTTTAGGACCATGCAAAGAGGAACGGGCTCTCATCATATGCACTAAAAGCAAGAGATGCAGGAGAGTCGGAGGATGCGGTCCAGGATGTAAAGTGCAGCAACTAAAAGACCgaccgaggaggaggaggaggatttaACTTCAAGTCTGACTAAACTCCATGTGTCATGAAGACTTCCTCAGGCCCAATTTGGATGCACTTGAGTTTCATATCGAGCTCACACACTGAACCCCAGCAGCCCTGCAGTCAGCCAGTTGCATGTCCTGCCCCTGCGTGACTCTCTGATTCAGTCATCCCAGTTATAAAACGGTGATGTAATCCTCCCCTGGTAGAGTGGAGGGAAAAGCTTACTAATAGGACTCCTTCAAATTATCACCTCCCACGATGTGAGTGCATGAATGACAAAGGGGTTAGACTGATTAGACCTTTTAATTGTTTGTATGTAAGGCTACAGCAATCCTGAAACATGCACTGAAATAGACCTGTTTATGAGCTTCATAATGCACTGTACTTTTTTGTTACATAAGCTATACTGTAAGTGTAAGCTTGTAAATAATGAGAGGATAAATGGTTTTATAGATGTTTTCTACAGTGTTTAGGTGATGTTTACACATTCTCCTGTGCTTTAGCATTATTTGTTGGGGGCAGTGTTAAGTGGCTTTTCGTCATAAACAAGATACAGGACCTGTGCATCGGAAGCTATGCTGTTAATGCTGTCTGTGGTTTCCAGAAATAAGCTTTCTCTGATATAGCAAGTGTAATGTGAG
>TU88039
ACTGGGTGTTCTGTCTGAGAAAGATGTGCTGGCTGCCGATAGACCAGCCTTTGCTCCTGCCCGGTGACTCCACCTGCAGCGCCCGGCGACCCTCGCCGTGCTCGGTGGCTCAGCTGCTCGCGTCTCGCCTGCGGAGGATCGGAGACCAGCTGGAGAAAAGCTGGACGGCCAGGGAGGCGGACAGCGGCTTCAACTGTGGGGGCGGAGGGACGGTGGTGGTGACCGGGACAGGCCACTTGAAGAGCTTCCTGTGCACTGCAATACATTTGACCGTGCTCGTGCTGGTCGTCGCGAGGCGACACCTGTAGGGCGCGAGGCGACAACACCAGCAACAGATGGTGCCTTTAGGACCATGCAAAGAGGAACGGGCTCTCATCATATGCACTAAAAGCAAGAGATGCAGGAGAGTCGGAGGATGCGGTCCAGGATGTAAAGTGCAGCAACTAAAAGACCgaccgaggaggaggaggaggatttaACTTCAAGTCTGACTAAACTCCATGTGTCATGAAGACTTCCTCAGGCCCAATTTGGATGCACTTGAGTTTCATATCGAGCTCACACACTGAACCCCAGCAGCCCTGCAGTCAGCCAGTTGCATGTCCTGCCCCTGCGTGACTCTCTGATTCAGTCATCCCAGTTATAAAACGGTGATGTAATCCTCCCCTGGTAGAGTGGAGGGAAAAGCTTACTAATAGGACTCCTTCAAATTATCACCTCCCACGATGTGAGTGCATGAATGACAAAGGGGTTAGACTGATTAGACCTTTTAATTGTTTGTATGTAAGGCTACAGCAATCCTGAAACATGCACTGAAATAGACCTGTTTATGAGCTTCATAATGCACTGTACTTTTTTGTTACATAAGCTATACTGTAAGTGTAAGCTTGTAAATAATGAGAGGATAAATGGTTTTATAGATGTTTTCTACAGTGTTTAGGTGATGTTTACACATTCTCCTGTGCTTTAGCATTATTTGTTGGGGGCAGTGTTAAGTGGCTTTTCGTCATAAACAAGATACAGGACCTGTGCATCGGAAGCTATGCTGTTAATGCTGTCTGTGGTTTCCAGAAATAAGCTTTCTCTGATATAGCAAGTGTAATGTGAGCAGAATTACTGAACATGTCTTTTTTATAAAGTGTACGTGTTATTTATACAAAATTTAATATTTCATATGGATTTTTAGTAGTTACCGTAATAAAATCTCATTCATCTCAATCtcattcagtcattgcaattaGAGAAGAAATACACTTGACATAGTGAGCTAAAGTGCTTTAATTTATAACGGAAAACCTCTGCACTGCAGTGCATTCTGCATTAAAGTCATAGTGTCTGTTATGCAACCCGAGAATTGCTATTCTAAAAGGAAATTCATATAAACAATATTCACAAGgaataacaatgaaataaagTTTGTAACAACATGGACGATTATCAGACATGAGCTCCCTCTCAATTAATATGCAAGTGGAAATGTATGGAAATTTGCAAATCTAAAAAAGGTCATGATTATGCTGCCTTGCTGGCATACACCACCTTACGTTCATTACTTAATACCTACAAAACATTCTCGTTTGCTTACGAAGAACTAACTGTACATACAGACCTACTGATTTTGTACTTACTATCATTCTAAGACATCATGTTGTGTTGAAAGGGTAAATATCccattttaaaagaaatactGCAAAACTTAGACAAGTAATATAGACAGCATACAGATGAGATGACTAAATCATAAAGTATACTAAACCATAACCAAACCAACCAAGTATACCATTACCACAAATAGTGTGAAGCGCTGTGACTATTTACGTTACTACCATACTAAATCAAAAGTTGCATTCATCTATCACGTGTTTAGTGTAAAACAGTGGCTAAGTCTACACAAAATGTTATTCTTGCCCTAACAATATGACGATCCAATTCTAAAACTGACAAAAATCCAAGCTTCATGTTTCTTTTAAGTCATACTATGTTGCTAAATGGTTTGTGCATTTGGCCTCTACAACCAGCTTCATAAGATGCTCAACGTATCCGCCCAGAAAATAATCTGATCAACGTATGTTCTGGTCTTTTCAAACGCCTCTAATAATAAAGTTACCTCCCTACGTATTTTGTGGTACTGCAACTGCTTaccctgatttaaaaaaattactgcACTAAGATAAACAGCAAAAGATGACACACCATCACCATTGTCTAACTCGCGTTACAGCacaatcgcgtttttctgggtGCACATGGTATGTTGCCAGAACTCAGTAGATCTGGAAGTGAGCCGAGGTGGTGCCGTCCTTCCAGCATCGCAGGGTCTCGATGACAGTGGAGCGACACAGTGGACATGTTCTCTCCCGGTCGAACCATAAACACAGGCACTCCTc
>TU88040
GAAGAAAAGGAGGGTCGTATATGTTCAAGATTTAAAGAGAGAAGACTGGGTGTTCTGTCTGAGAAAGATGTGCTGGCTGCCGATAGACCAGCCTTTGCTCCTGCCCGGTGACTCCACCTGCAGCGCCCGGCGACCCTCGCCGTGCTCGGTGGCTCAGCTGCTCGCGTCTCGCCTGCGGAGGATCGGAGACCAGCTGGAGAAAAGCTGGACGGCCAGGGAGGCGGACAGCGGCTTCAACTGTGGGGGCGGAGGGACGGTGGTGGTGACCGGGACAGGCCACTTGAAGAGCTTCCTGTGCACTGCAATACATTTGACCGTGCTCGTGCTGGTCGTCGCGAGGCGACACCTGTAGGGCGCGAGGCGACAACACCAGCAACAGATGGTGCCTTTAGGACCATGCAAAGAGGAACGGGCTCTCATCATATGCACTAAAAGCAAGAGATGCAGGAGAGTCGGAGGATGCGGTCCAGGATGTAAAGTGCAGCAACTAAAAGACCgaccgaggaggaggaggaggatttaACTTCAAGTCTGACTAAACTCCATGTGTCATGAAGACTTCCTCAGGCCCAATTTGGATGCACTTGAGTTTCATATCGAGCTCACACACTGAACCCCAGCAGCCCTGCAGTCAGCCAGTTGCATGTCCTGCCCCTGCGTGACTCTCTGATTCAGTCATCCCAGTTATAAAACGGTGATGTAATCCTCCCCTGGTAGAGTGGAGGGAAAAGCTTACTAATAGGACTCCTTCAAATTATCACCTCCCACGATGTGAGTGCATGAATGACAAAGGGGTTAGACTGATTAGACCTTTTAATTGTTTGTATGTAAGGCTACAGCAATCCTGAAACATGCACTGAAATAGACCTGTTTATGAGCTTCATAATGCACTGTACTTTTTTGTTACATAAGCTATACTGTAAGTGTAAGCTTGTAAATAATGAGAGGATAAATGGTTTTATAGATGTTTTCTACAGTGTTTAGGTGATGTTTACACATTCTCCTGTGCTTTAGCATTATTTGTTGGGGGCAGTGTTAAGTGGCTTTTCGTCATAAACAAGATACAGGACCTGTGCATCGGAAGCTATGCTGTTAATGCTGTCTGTGGTTTCCAGAAATAAGCTTTCTCTGATATAGCAAGTGTAATGTGAGCAGAATTACTGAACATGTCTTTTTTATA
>XR_005639519.1
AGTTAAGGTTTGATGAGAGAAGAAAAGGAGGGTCGTATATGTTCAAGATTTAAAGAGAGAAGACTGGGTGTTCTGTCTGAGAAAGATGTGCTGGCTGCCGATAGACCAGCCTTTGCTCCTGCCCGGTGACTCCACCTGCAGCGCCCGGCGACCCTCGCCGTGCTCGGTGGCTCAGCTGCTCGCGTCTCGCCTGCGGAGGATCGGAGACCAGCTGGAGAAAAGCTGGACGGCCAGGGAGGCGGACAGCGGCTTCAACTGTGGGGGCGGAGGGACGGTGGTGGTGACCGGGACAGGCCACTTGAAGAGCTTCCTGTGCACTGCAATACATTTGACCGTGCTCGTGCTGGTCGTCGCGAGGCGACACCTGTAGGGCGCGAGGCGACAACACCAGCAACAGATGGTGCCTTTAGGACCATGCAAAGAGGAACGGGCTCTCATCATATGCACTAAAAGCAAGAGATGCAGGAGAGTCGGAGGATGCGGTCCAGGATGTAAAGTGCAGCAACTAAAAGACCgaccgaggaggaggaggaggatttaACTTCAAGTCTGACTAAACTCCATGTGTCATGAAGACTTCCTCAGGCCCAATTTGGATGCACTTGAGTTTCATATCGAGCTCACACACTGAACCCCAGCAGCCCTGCAGTCAGCCAGTTGCATGTCCTGCCCCTGCGTGACTCTCTGATTCAGTCATCCCAGTTATAAAACGGTGATGTAATCCTCCCCTGGTAGAGTGGAGGGAAAAGCTTACTAATAGGACTCCTTCAAATTATCACCTCCCACGATGTGAGTGCATGAATGACAAAGGGGTTAGACTGATTAGACCTTTTAATTGTTTGTATGTAAGGCTACAGCAATCCTGAAACATGCACTGAAATAGACCTGTTTATGAGCTTCATAATGCACTGTACTTTTTTGTTACATAAGCTATACTGTAAGTGTAAGCTTGTAAATAATGAGAGGATAAATGGTTTTATAGATGTTTTCTACAGTGTTTAGGTGATGTTTACACATTCTCCTGTGCTTTAGCATTATTTGTTGGGGGCAGTGTTAAGTGGCTTTTCGTCATAAACAAGATACAGGACCTGTGCATCGGAAGCTATGCTGTTAATGCTGTCTGTGGTTTCCAGAAATAAGCTTTCTCTGATATAGCAAGTGTAATGTGAGCAGAATTACTGAACATGTCTTTTTTATAAAGTGTACGTGTTATTTATACAAAATTTAATATTTCATATGGATTTTTAGTAGTTACCGTAATAAAATCTCATTCATCTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88038 False 2204 TUCP 0.48 2 30246887 30250240
TU88039 True 2387 TUCP 0.43 2 30247983 30251519
TU88040 False 1180 TUCP 0.48 2 30247939 30250268
XR_005639519.1 False 1280 lncRNA 0.47 2 30247921 30250350

Neighbor

gene id symbol gene type direction distance location
tesca tesc coding upstream 24362 30197629 ~ 30222525 (+)
zgc:112294 LOC104923678,LOC103369777,LOC100697282 coding upstream 172290 30071764 ~ 30074597 (+)
selenoe LOC104961905,LOC101066385,LOC105931211,LOC108246935,LOC103369776 coding upstream 175332 30069411 ~ 30071555 (+)
scarf2 scarf2 coding upstream 188083 30037552 ~ 30058804 (+)
hscb hscb,LOC102796510 coding upstream 626229 29607238 ~ 29620658 (+)
spring1 clg12h12orf49,c21h12orf49,LOC101487986,LOC104923683,LOC102233336 coding downstream 12084 30263603 ~ 30267073 (+)
rfc5 rfc5 coding downstream 272550 30524069 ~ 30530383 (+)
pebp1 pebp1 coding downstream 303494 30555013 ~ 30557814 (+)
suds3 suds3 coding downstream 396854 30648373 ~ 30657730 (+)
srrm4 srrm4 coding downstream 517906 30769425 ~ 30835681 (+)
G65792 NA non-coding upstream 23811 30206616 ~ 30223076 (+)
G65777 NA non-coding upstream 94800 30151772 ~ 30152087 (+)
G65771 NA non-coding upstream 149731 30096930 ~ 30097156 (+)
G65770 NA non-coding upstream 152141 30091698 ~ 30094746 (+)
G65748 NA non-coding upstream 308742 29937854 ~ 29938145 (+)
LOC120559990 NA non-coding downstream 135645 30387164 ~ 30387819 (+)
G65881 NA non-coding downstream 165994 30417513 ~ 30421446 (+)
G65883 ksr2 non-coding downstream 179867 30431386 ~ 30431741 (+)
G65890 vsig10 non-coding downstream 288298 30539817 ~ 30540839 (+)
G65951 NA non-coding downstream 502840 30754359 ~ 30837774 (+)
fbxo21 fbxo21 other upstream 34779 30186848 ~ 30212108 (+)
ubac1 ubac1 other upstream 895131 29344580 ~ 29351756 (+)
mboat4 NA other upstream 1397416 28845626 ~ 28849471 (+)
G65084 lipg other upstream 2875928 27205234 ~ 27370959 (+)
ndufs4 ndufs4 other upstream 3207288 27012210 ~ 27039599 (+)
G65899 taok3 other downstream 322567 30574086 ~ 30578159 (+)
LOC120561064 NA other downstream 606061 30857580 ~ 30893280 (+)
dmrt3a dmrt3 other downstream 1556276 31807795 ~ 31811553 (+)
adamts3 adamts3,LOC100699019,LOC101479253,LOC102313231 other downstream 1781057 32032576 ~ 32209534 (+)
G66231 NA other downstream 1874774 32126293 ~ 32136966 (+)

Expression


Co-expression Network