G65958 (xbp1)


Basic Information

Item Value
gene id G65958
gene name xbp1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 30906356 ~ 30909470 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU88228
TGCAAtgcaaaaagttttttttaatgcagtaGACTACATGGAGAGCATCAACAAATTAGAAGAAAGCGCGTTTACATGTGGATATACAAGGACTCCGAAGCagaatacacaaataaataaaaagctatTTAAATGATCGGTCCCTATCCCCCCCTATTCATTTACAGAAATACTGGATTCCACCCACGTCATCTTTCAACAGTGAGCGAAAGATTTGTAATTAATCTTAAATCCTCTGCAGTAATTAAATGATGCCAAAATAAGCTGTCATGAACTCCATCTCCCACAAGTCAAGGTAGCATCGCCAATGGTACAGACCTGCTGTATTAAAAAAGAGATTATGTGCTTAACTTTAGCAAATATATGAGCAGACTCagtggtatgtatgtatgtatgatatattttaattattgGTGGGCTGGATGGTTGATTCAGACACTGATGAGCTGGGGGAAGAGTTCATTAGCAAACATGTCATCCCAGGTGCTCTCTGAGCACAGGGAAGAGGAAATGTCGCTGAAAGGGGAAGGGGACCCTTCGTATCCGGAGTCGCTGTAGGTATCCGCAAGGCAAGCTTCATTATCCAGGCCGCTGAGGGAAGTTGAGGAGGCTCCAGACAAAAAGTCATCCATCCGACTGTGGCTGTCACAGCTGGGGATGACCACTTCCTCTGGCTCGTCTTTGATGCAGACGGTCTCCTCCTCGACCACCACCTCGGGAATGGGGACGGCGTCCTCGTCGATCGTCTCCTCTGTGTCGCTCTCCGAGTCGTAGCGCTGCCCGCTGCTCACCTCCTCCACGGGCTTCGTGTAGATGTGGTCAAAGTGGATCAGTTCATTAAGGGCCTCCAGCTTAACTGATGGGGCCCCCAGAGTCGCAGGTGTGGTGGCAGGTACTGGGTCCCCCCCTCCGACCAACAGCACCTGCGGCTCCTGGCACTCCTGTTCACAAGACTTGAGGAACAGCTCTGGGTCAAGGATGTCCAGAATGCCCAGGAGCAAATCAGACTagtgaggggaggggggggaaaaCCAGAGATTAGCCTAGTAACCCATGACCTGACTCTGGAGCTTTCTTAGAAACAAGATTTAAATCTTTTCATAAAGAAGGAGCCATCTTTATTAGAGACTTACCTCATTGTCTGCAGTGTCAGAACCATTTGTATCCATTGAGAAGTCTTCAGATTTAGGGAGTGCTGGGCCTGCACCTGCTGCGGAGGCACACGTAGCCTGAGTGCTGCGGACTCAGAAGACCCGATCCCTAAACCTGCGTCGTTCCCAGTGGACAACAAACTCTGAACCTGGGATGGAGAAAAATGGACAAAGGGTGAATTACAGCTAATCCACGCAAAGGACAATTACCACAAGCCAACACACTCTGCTTCCCCTACAAGTATGAATTACAATCTTACCTTCTCTTTTGAGTCGAGGGTGTCCAACCCAAGTCTCTGTCTTAGTTCCTCATTTTCTGTCATTAGGCCATTTGATTTGTCCCGAAGTAGACTGTTTTCAATGTGAAGTTTCTGATTCTttgctgtaatgcagcctttaaaaccagaaaaagacaccacttatgtcaAATTACGAAATCCAATATccaagatgatatctagtctcccatcacgatatcgatataataaatatattgcccagccctattgaATTGTACTTCAGATGACATATTGGGAGGTGGAATGTGCTTTAAATGGGGTCCTGTATGCCCCGGCTACACCCCTGTTTTAAAGGTGCTTTACCTCCAGCTCCAACTCTAGTACTTGCTGTTCCAGCTCCCCCATTTTTGCCTTCTTCCTGTCTCTGGCGGTCTGAGCTGCGACTCTGTTCTTTAGTTtcctgaggggaaaaaaaagaagaagaagaaaatattaGGAGAAAATAAATTTAACACATTCTTTCCATGATGCTGACAAAGCCCTCCGACGTGCATAGAGTTCACGGTACTGCGCAATCACCGGCCATGTTCCTGCCACGCAGGCATATCAGGATATCAGTATCCTGCTCCGTAACAGCAGAGCCCAGGCGGGTCCTAACCGTCAAATCACTGAGATAAGCAGTTTgacaagctaacgttaggccAAAGTACAAAGTTCACAGAAATACGACGTTTAACTAAGTCAATTACTGGCTTCATGTGGCAATTTTAAACAACGTAACGTCACATGACCTACGGATAATATTAGGAGATGCAACATTGACCTAATTCAGTCACGGTGCGATTTTAATCGCCATCAGTTTCACGTTACTATTGTTCAACGGAGATCAATATCTATGGGCGTGCCCCTGTAGTAGTCTCTTTAACAATCGCCGGGTTTACGctttaaaaataatgtttttaccCAGATATGATGGTACATTAAGGATATTTTTCTGTAACTAACCTGCGAAGTTGCTTTTCCTCCGGACTCAAGTGCGTGAGCCTCTGTCTTTTTCGGATGGGCGGCCCAGCAGAAGAGTTGGAGTCGGAGTCCGACGACGCCGTGCTAGCCGATGACGGTAAAACGACAGAGATGGCCCGGTTGAAGCCTGCCTGTGAGCCGCTGGAGGAGCCGGTCTGTTTGCCGGAAATCAGGAGCACTTTATGGGGCCCTCCGGTCCCTGCTGCTACCACCACCATGTTGATATATCCTACAGAcggttacttaaaaaaataatggggtATCCTTTTGAATTTAGTAGAAACCTTAAGGTTTCTCTGGTACCTGATCCCCGGCAATTCTC
>TU88229
TGCAAtgcaaaaagttttttttaatgcagtaGACTACATGGAGAGCATCAACAAATTAGAAGAAAGCGCGTTTACATGTGGATATACAAGGACTCCGAAGCagaatacacaaataaataaaaagctatTTAAATGATCGGTCCCTATCCCCCCCTATTCATTTACAGAAATACTGGATTCCACCCACGTCATCTTTCAACAGTGAGCGAAAGATTTGTAATTAATCTTAAATCCTCTGCAGTAATTAAATGATGCCAAAATAAGCTGTCATGAACTCCATCTCCCACAAGTCAAGGTAGCATCGCCAATGGTACAGACCTGCTGTATTAAAAAAGAGATTATGTGCTTAACTTTAGCAAATATATGAGCAGACTCagtggtatgtatgtatgtatgatatattttaattattgGTGGGCTGGATGGTTGATTCAGACACTGATGAGCTGGGGGAAGAGTTCATTAGCAAACATGTCATCCCAGGTGCTCTCTGAGCACAGGGAAGAGGAAATGTCGCTGAAAGGGGAAGGGGACCCTTCGTATCCGGAGTCGCTGTAGGTATCCGCAAGGCAAGCTTCATTATCCAGGCCGCTGAGGGAAGTTGAGGAGGCTCCAGACAAAAAGTCATCCATCCGACTGTGGCTGTCACAGCTGGGGATGACCACTTCCTCTGGCTCGTCTTTGATGCAGACGGTCTCCTCCTCGACCACCACCTCGGGAATGGGGACGGCGTCCTCGTCGATCGTCTCCTCTGTGTCGCTCTCCGAGTCGTAGCGCTGCCCGCTGCTCACCTCCTCCACGGGCTTCGTGTAGATGTGGTCAAAGTGGATCAGTTCATTAAGGGCCTCCAGCTTAACTGATGGGGCCCCCAGAGTCGCAGCTCCAACTCTAGTACTTGCTGTTCCAGCTCCCCCATTTTTGCCTTCTTCCTGTCTCTGGCGGTCTGAGCTGCGACTCTGTTCTTTAGTTCCTGCGAAGTTGCTTTTCCTCCGGACTCAAGTGCGTGAGCCTCTGTCTTTTTCGGATGGGCGGCCCAGCAGAAGAGTTGGAGTCGGAGTCCGACGACGCCGTGCTAGCCGATGACGGTAAAACGACAGAGATGGCCCGGTTGAAGCCTGCCTGTGAGCCGCTGGAGGAGCCGGTCTGTTTGCCGGAAATCAGGAGCACTTTATGGGGCCCTCCGGTCCCTGCTGCTACCACCACCATGTTGATATATCCTACAGAcggttacttaaaaaaataatggggtATCCTTTTGAATTTAGTAGAAACCTTAAGGTTTCTCTGGTACCTGATCCCCGGCAATTCTC
>TU88230
TGCAAtgcaaaaagttttttttaatgcagtaGACTACATGGAGAGCATCAACAAATTAGAAGAAAGCGCGTTTACATGTGGATATACAAGGACTCCGAAGCagaatacacaaataaataaaaagctatTTAAATGATCGGTCCCTATCCCCCCCTATTCATTTACAGAAATACTGGATTCCACCCACGTCATCTTTCAACAGTGAGCGAAAGATTTGTAATTAATCTTAAATCCTCTGCAGTAATTAAATGATGCCAAAATAAGCTGTCATGAACTCCATCTCCCACAAGTCAAGGTAGCATCGCCAATGGTACAGACCTGCTGTATTAAAAAAGAGATTATGTGCTTAACTTTAGCAAATATATGAGCAGACTCagtggtatgtatgtatgtatgatatattttaattattgGTGGGCTGGATGGTTGATTCAGACACTGATGAGCTGGGGGAAGAGTTCATTAGCAAACATGTCATCCCAGGTGCTCTCTGAGCACAGGGAAGAGGAAATGTCGCTGAAAGGGGAAGGGGACCCTTCGTATCCGGAGTCGCTGTAGGTATCCGCAAGGCAAGCTTCATTATCCAGGCCGCTGAGGGAAGTTGAGGAGGCTCCAGACAAAAAGTCATCCATCCGACTGTGGCTGTCACAGCTGGGGATGACCACTTCCTCTGGCTCGTCTTTGATGCAGACGGTCTCCTCCTCGACCACCACCTCGGGAATGGGGACGGCGTCCTCGTCGATCGTCTCCTCTGTGTCGCTCTCCGAGTCGTAGCGCTGCCCGCTGCTCACCTCCTCCACGGGCTTCGTGTAGATGTGGTCAAAGTGGATCAGTTCATTAAGGGCCTCCAGCTTAACTGATGGGGCCCCCAGAGTCGCAGGTGTGGTGGCAGGTACTGGGTCCCCCCCTCCGACCAACAGCACCTGCGGCTCCTGGCACTCCTGTTCACAAGACTTGAGGAACAGCTCTGGGTCAAGGATGTCCAGAATGCCCAGGAGCAAATCAGACTagtgaggggaggggggggaaaaCCAGAGATTAGCCTAGTAACCCATGACCTGACTCTGGAGCTTTCTTAGAAACAAGATTTAAATCTTTTCATAAAGAAGGAGCCATCTTTATTAGAGACTTACCTCATTGTCTGCAGTGTCAGAACCATTTGTATCCATTGAGAAGTCTTCAGATTTAGGGAGTGCTGGGCCTGCACCTGCTGCGGACTCAGAAGACCCGATCCCTAAACCTGCGTCGTTCCCAGTGGACAACAAACTCTGAACCTCTCTTTTGAGTCGAGGGTGTCCAACCCAAGTCTCTGTCTTAGTTCCTCATTTTCTGTCATTAGGCCATTTGATTTGTCCCGAAGTAGACTGTTTTCAATGTGAAGTTTCTGATTCTttgctgtaatgcagcctttaaaaccagaaaaagacaccacttatgtcaAATTACGAAATCCAATATccaagatgatatctagtctcccatcacgatatcgatataataaatatattgcccagccctattgaATTGTACTTCAGATGACATATTGGGAGGTGGAATGTGCTTTAAATGGGGTCCTGTATGCCCCGGCTACACCCCTGTTTTAAAGGTGCTTTACCTCCAGCTCCAACTCTAGTACTTGCTGTTCCAGCTCCCCCATTTTTGCCTTCTTCCTGTCTCTGGCGGTCTGAGCTGCGACTCTGTTCTTTAGTTtcCTGCGAAGTTGCTTTTCCTCCGGACTCAAGTGCGTGAGCCTCTGTCTTTTTCGGATGGGCGGCCCAGCAGAAGAGTTGGAGTCGGAGTCCGACGACGCCGTGCTAGCCGATGACGGTAAAACGACAGAGATGGCCCGGTTGAAGCCTGCCTGTGAGCCGCTGGAGGAGCCGGTCTGTTTGCCGGAAATCAGGAGCACTTTATGGGGCCCTCCGGTCCCTGCTGCTACCACCACCATGTTGATATATCCTACAGAcggttacttaaaaaaataatggggtATCCTTTTGAATTTAGTAGAAACCTTAAGGTTTCTCTGGTACCTGATCCCCGGCAATTCTC

Function

symbol description
xbp1 Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within gland development; hatching; and transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including axial mesoderm; axis; digestive system; ectoderm; and germ ring. Orthologous to human XBP1 (X-box binding protein 1).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: X-box-binding protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88228 True 2735 lncRNA 0.46 2 30906356 30909470
TU88229 False 1310 lncRNA 0.49 3 30906356 30909470
TU88230 False 2052 lncRNA 0.48 5 30906356 30909470

Neighbor

gene id symbol gene type direction distance location
hspb8 hspb8 coding upstream 56875 30838226 ~ 30849481 (+)
srrm4 srrm4 coding upstream 70675 30769425 ~ 30835681 (+)
suds3 suds3 coding upstream 248626 30648373 ~ 30657730 (+)
pebp1 pebp1 coding upstream 348542 30555013 ~ 30557814 (+)
rfc5 rfc5 coding upstream 375973 30524069 ~ 30530383 (+)
znrf3 znrf3 coding downstream 19276 30928746 ~ 31007297 (+)
si:dkey-174n20.1 LOC104959464,LOC104920648,LOC101478912,LOC102310039,LOC100693286 coding downstream 208355 31117825 ~ 31121911 (+)
LOC120561479 NA coding downstream 213088 31122558 ~ 31124674 (+)
LOC120561480 NA coding downstream 217390 31126860 ~ 31128760 (+)
LOC120559964 NA coding downstream 327798 31237268 ~ 31241040 (+)
G65951 NA non-coding upstream 68582 30754359 ~ 30837774 (+)
G65890 vsig10 non-coding upstream 365517 30539817 ~ 30540839 (+)
G65883 ksr2 non-coding upstream 474615 30431386 ~ 30431741 (+)
G65881 NA non-coding upstream 484910 30417513 ~ 30421446 (+)
LOC120559990 NA non-coding upstream 518537 30387164 ~ 30387819 (+)
G66015 NA non-coding downstream 220571 31130041 ~ 31154168 (+)
G66072 NA non-coding downstream 392040 31301510 ~ 31301746 (+)
G66071 NA non-coding downstream 401473 31310943 ~ 31311447 (+)
G66069 NA non-coding downstream 408106 31317576 ~ 31318474 (+)
G66092 LOC103362337,LOC101472255,LOC102204493,LOC102311726,LOC100707713 non-coding downstream 441728 31351198 ~ 31409156 (+)
LOC120561064 NA other upstream 13076 30857580 ~ 30893280 (+)
G65899 taok3 other upstream 328197 30574086 ~ 30578159 (+)
LOC120560820 NA other upstream 654837 30246887 ~ 30251519 (+)
fbxo21 fbxo21 other upstream 694248 30186848 ~ 30212108 (+)
ubac1 ubac1 other upstream 1554600 29344580 ~ 29351756 (+)
dmrt3a dmrt3 other downstream 898325 31807795 ~ 31811553 (+)
adamts3 adamts3,LOC100699019,LOC101479253,LOC102313231 other downstream 1123106 32032576 ~ 32209534 (+)
G66231 NA other downstream 1216823 32126293 ~ 32136966 (+)
G66256 slc4a5,LOC102211952,LOC101484802 other downstream 1413037 32322507 ~ 32329990 (+)
G66263 LOC106536102 other downstream 1455390 32364860 ~ 32369984 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G117823 NA unknown CM030135.1 CM030135.1 17226090 ~ 17256271 (-)