LOC120560708


Basic Information

Item Value
gene id LOC120560708
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 32685269 ~ 32694087 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU88743
TTGGTGATCGTCTGTGGAAACAAGATAACACACACGTAGGACATGTTTACTCTGGGAACTTCGAGCGCCCCGTGCATGAACTCCATCGACACTTCCTCGTTCTCAGCCAGCCAGGCCAGGACAAACTGGAGGAACCACCTGGAACAATAACTAATCTTATTAACCTGCTCTTTGATGAACCATAAAGTTGATACATGAAACATGAGAAAACC
>XR_005639506.1
TTTACTTCTCTAGTTAGATCTCTTTTGTCAGGAATGCTGCTGTTTGATATCAAACATTCACACTGTGACGGCTGTACATGTGcgtctctttgtcttttcctAAAAGAGCTGCAGGCAGTTTGTTGGTAGTGAAGATGTCGTGGAATCAAAGGGACTGTTAGGTCGTTTGGGACAATTTAAAACCATTTTAATTCAAGTCTTTAGTCTGTCagagcaagtctcaagtcaagtcTTCATAAGCAAATTGTGGTTGACACCTGAAATGCAGTGTTGGAATGCAACTAAcgCGCCCCGTGCATGAACTCCATCGACACTTCCTCGTTCTCAGCCAGCCAGGCCAGGACAAACTGGAGGAACCACCTGGAACAATAACTAATCTTATTAACCTGCTCTTTGATGAACCATAAAGTTGATACATGAAACATGAGAAAACCTACTGAATGTGTAACAAAATGCTTTGTTGTTTACTTCTAAAGCTTGCAGATTCAGAAacctttttaatccctttttcaAAACATaggtttaaaaaatattttcttaattCTCCAGTTCTATTATGTCttacctgttttattttgtttgtttatttcttttaatcttACTGAATCTGTGAAATGTACCTTGTAACTTCTAAACCTGTAAGTACTTCTGTAACCTGTAAGTCCCAAAAGTTGTTGTATTAATAGaatgtgttattattatcaCCATTACACCATATATTTGTAGTGTCCAAACCCAGTGAGGAGAGCTTTGAGTGTGTGGATGTGGGTAGTTTTTATGGTATATGCAACAACAGGCCAAGTCTCAGTGGAAAGGCAGAAATTATGAGTCACGAGGACCACCTTTCTGTCTGGAGGAGACAGAGTGAgataatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtcttacgcAGGGTATTCAGGCACAGTGTCTGCGAAGGCGGGCAGGTCCTTAACATACTCGTTGTAAAGCCACTTGACCTTGAAGTGCAGGTTCATGTAGTCAGCAGTCTTACAGAGTCTATGCTTCTCATGTTCTGTAAAAACGACAACCATACatgtgcatgcacgcacgcacgcacgcacacacacacacacacgcacacacacacacacgcacacgcacacgcacacgcacacacacacacacacacacacacagaaacaaaccaaAGTAAACACAGGATTTATCTCTTGAGGTGTGCTGCAGCAGTTACAGGTTTGCAGTCTCTTGTTAAAGATCTTTAACACTGCAACTCCAATGTAATAAAGTGCAGGTTGGTTTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU88743 False 212 lncRNA 0.46 2 32685269 32693217
XR_005639506.1 True 1304 lncRNA 0.41 2 32685340 32694087

Neighbor

gene id symbol gene type direction distance location
LOC120560720 sec14l2 coding upstream 25939 32636836 ~ 32659330 (+)
ascc2 ascc2 coding upstream 58580 32614892 ~ 32626689 (+)
trnap-ugg NA coding upstream 113510 32571688 ~ 32571759 (+)
rufy3 rufy3 coding upstream 258887 32404387 ~ 32426382 (+)
smarca2 smarca2 coding upstream 718535 31906122 ~ 31966734 (+)
rusc2 rusc2,LOC104944866 coding downstream 160627 32854714 ~ 32901547 (+)
wdfy3 NA coding downstream 263142 32957229 ~ 33070510 (+)
rasgef1ba rasgef1b coding downstream 462827 33156914 ~ 33294101 (+)
LOC120560373 LOC106570904 coding downstream 554317 33248404 ~ 33252407 (+)
prkg2 prkg2 coding downstream 609252 33303339 ~ 33344015 (+)
G66319 NA non-coding upstream 71361 32612999 ~ 32613908 (+)
G66293 NA non-coding upstream 169764 32511619 ~ 32515505 (+)
G66295 NA non-coding upstream 210189 32474487 ~ 32475080 (+)
G66294 NA non-coding upstream 211221 32471185 ~ 32474048 (+)
G66255 NA non-coding upstream 394250 32290772 ~ 32291019 (+)
G66340 NA non-coding downstream 26668 32720755 ~ 32738375 (+)
G66439 NA non-coding downstream 377450 33071537 ~ 33072722 (+)
G66496 NA non-coding downstream 433615 33127702 ~ 33127902 (+)
G66497 NA non-coding downstream 441703 33135790 ~ 33136017 (+)
G66498 NA non-coding downstream 445781 33139868 ~ 33140093 (+)
slc39a14 slc39a14 other upstream 72331 32572200 ~ 32612938 (+)
LOC120560610 ypel1,ypelc,YPEL1,ypeld,LOC103374080,LOC106586007,LOC106931471 other upstream 174532 32477038 ~ 32510737 (+)
mapk1 mapk1,LOC103371039,LOC107386038 other upstream 214442 32440375 ~ 32470827 (+)
G66263 LOC106536102 other upstream 315285 32364860 ~ 32369984 (+)
G66256 slc4a5,LOC102211952,LOC101484802 other upstream 355279 32322507 ~ 32329990 (+)
cds1 cds1,LOC103364266,LOC106922331,LOC103134889,LOC107386064 other downstream 383159 33077246 ~ 33112816 (+)
antxr2a antxr2 other downstream 823512 33517599 ~ 33603625 (+)
G66578 NA other downstream 1081838 33775925 ~ 33776398 (+)
cfap157 NA other downstream 1819923 34514010 ~ 34527405 (+)
LOC120561070 NA other downstream 2071843 34765930 ~ 34773806 (+)

Expression


Co-expression Network