G66522 (bmp3)


Basic Information

Item Value
gene id G66522
gene name bmp3
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 33351699 ~ 33352950 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU89021
ACTGAGCGGGGCAGGACACGTTACCAGATCCAGTTTACTTTTACGAAAAAATATTATACAAGGCTTGCATTTATGTCCTCTCTTGACTAGCAGAACTCAGTGTTGTTAACATGCGTAAAACTTTGGACACCTACCCCAGTGCGCTTTGAAACTGCGGACAGTGTTGCCGTCCTTGAATGGAAATCCAGCCCGGTTGTACTTCGCGTAAAGCATCTGCATGTGTTCCGTCATTGTATCCTGTAAAAGCAGATCCTGGTCGTCTTTAGCAGGGTGCTTTTTATCCTCTGAATGCGTAAAATCCACCTTTCGTCTGTCGGGGAAACTGTCCGTTTTCAGCATCGCGCAGTATCCAACGCACATATAACTCCATCCGTAAAGTAGTAGGACCACAAACCGAGAGTATAGAGCCATGCTTGAGCCAAAGCGAAGGTAGCAGCAGAAAAAATAATAGTAGTGGAAAACCTAGCACGTTTCCAAAAGCGGTCACTATCTCCGAAAAGACAGACCATCACCTGAGGAGTCCTCTCTTAGAAAATGATACCATCACCTTTGACACCAGTCACAGCAAGAGAGGAAGGTGGGCAGGCAAAAGTAAGAGCGTTATCCAAGTTGTCTCTGTGCTTTTGATAAGTTGCAGTTCTAAACGTGCCACAGTCAGTGAATGATAAATGTTCTGGCGCACAGCAGAAGGTGTAGTGGAACAGATGCGGGAGAACTAAGCCGCTAAAACAGCGACGCTCTTGGTTTTGTATCCGAGCTCTGAGCTGATTTCAGGACCAGCAGTCAACCGTCCCCCCGTCTCAGCTTTCATTGAAGGTAAAGCATGTTGTGCTTGGTATTATAGGACTTGTGGGACCAGctgggtatctctctctctctctctctctctctctctctctctctctctctctcagagttTCCTGTTCATGATACTTTTACGCACATTCAGCCTGGGGACaaattatcttatcttatcaagAGCTGAAAGGCTGTGTTGTCAGTTGATTCGAGACGGATCTTAAAAATATTTCATTAAAGGAAATTCCGCCAATTTATTGAACTGATTTTGAATATCTAAACAGCTGCCGCAGAACAGTCCCTCCGTGCGTAATTTCTACTCCACAGAGCTGTGCGTCTGGACCGCGCTGCTGAATGAAGCGGCTTATTGTCGGCATTAAAGGCTCTCTCCCCTATTTAGTTTAGTTCAATAGAGTTAAGCACACACATCCTGTACCATCACGGTCCGATCCGG

Function

symbol description
bmp3 Predicted to enable cytokine activity. Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including fin; heart; otic vesicle; paraxial mesoderm; and pharyngeal arch. Orthologous to human BMP3 (bone morphogenetic protein 3).

NR:

description
PREDICTED: bone morphogenetic protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU89021 True 1252 lncRNA 0.46 1 33351699 33352950

Neighbor

gene id symbol gene type direction distance location
prkg2 prkg2 coding upstream 7684 33303339 ~ 33344015 (+)
rasgef1ba rasgef1b coding upstream 57598 33156914 ~ 33294101 (+)
LOC120560373 LOC106570904 coding upstream 99292 33248404 ~ 33252407 (+)
wdfy3 NA coding upstream 281189 32957229 ~ 33070510 (+)
rusc2 rusc2,LOC104944866 coding upstream 450152 32854714 ~ 32901547 (+)
paqr3a paqr3,LOC104954486,LOC103364579,LOC102780134 coding downstream 426057 33779007 ~ 33790810 (+)
cnot6l cnot6l coding downstream 817525 34170475 ~ 34187620 (+)
slc25a25a slc25a25,LOC102778434,LOC103370741 coding downstream 919997 34272947 ~ 34280255 (+)
zdhhc12a zdhhc12,LOC100694502,LOC102293169,LOC101476542 coding downstream 928029 34280979 ~ 34289653 (+)
LOC120560630 set,LOC102777863,LOC107083999,LOC100696975,LOC105014167 coding downstream 957150 34310100 ~ 34314260 (+)
G66521 bmp3,LOC102780994 non-coding upstream 1146 33349506 ~ 33350553 (+)
G66498 NA non-coding upstream 211606 33139868 ~ 33140093 (+)
G66497 NA non-coding upstream 215682 33135790 ~ 33136017 (+)
G66496 NA non-coding upstream 223797 33127702 ~ 33127902 (+)
G66439 NA non-coding upstream 278977 33071537 ~ 33072722 (+)
G66568 NA non-coding downstream 372570 33725520 ~ 33725782 (+)
G66571 NA non-coding downstream 402619 33755569 ~ 33755955 (+)
LOC120561187 NA non-coding downstream 416894 33769844 ~ 33772534 (+)
LOC120560041 NA non-coding downstream 523225 33876175 ~ 33877007 (+)
G66652 NA non-coding downstream 834880 34187830 ~ 34281929 (+)
cds1 cds1,LOC103364266,LOC106922331,LOC103134889,LOC107386064 other upstream 238883 33077246 ~ 33112816 (+)
slc39a14 slc39a14 other upstream 738761 32572200 ~ 32612938 (+)
LOC120560610 ypel1,ypelc,YPEL1,ypeld,LOC103374080,LOC106586007,LOC106931471 other upstream 840962 32477038 ~ 32510737 (+)
mapk1 mapk1,LOC103371039,LOC107386038 other upstream 880872 32440375 ~ 32470827 (+)
G66263 LOC106536102 other upstream 981715 32364860 ~ 32369984 (+)
antxr2a antxr2 other downstream 164649 33517599 ~ 33603625 (+)
G66578 NA other downstream 422975 33775925 ~ 33776398 (+)
cfap157 NA other downstream 1161060 34514010 ~ 34527405 (+)
LOC120561070 NA other downstream 1412980 34765930 ~ 34773806 (+)
G66832 NA other downstream 1508549 34861499 ~ 34864690 (+)

Expression


Co-expression Network