G67483 (pdlim2,LOC104963286,LOC103470528,LOC100702294)


Basic Information

Item Value
gene id G67483
gene name pdlim2,LOC104963286,LOC103470528,LOC100702294
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 37098792 ~ 37151646 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU90215
TGTGCGATTTTATTGAGTGCCacatgaaatgcaaacattataGTGTATCTCTGAGTACTGCTGTAACTGGTAAAGTGTAGTATTTCAACTCTTCACACTAAATGGCCCTGTGCATACATTatgcattttttaaatggtCTATGTTATAGAATACagttcaaaaacatcaaaaatatttgtatattGAATCCATAGTCCCTCATAAGCAACAAAACAAGTCAGCAAATACATAattcttttttcataatttctACTCAAATTCTTCATACAAAAGAAATATAGAAAAAACTCGAGGGCTTTTGGCCTGACTCtagacacacgcgcacacacacacacacacacacacacgcacaaacacacactcacgcacacacacactgaaaatggcatGCAGTGTAGGTGAGATTTTGGTCCCTTTGTGTCAGCCGGAGATTCAAATGATTATCCAGATCCTCAAAGAGTCAGAGTGCCAGTCCCGTTGAGCTTGTCTAGAGCGTTGGCGTTATGAAGATGTGGCCTCAGTACAATGTGGCTCGAGTCCATGGCAGCTGTGCATCATTAGAGCTAAGAATAACCTAAAGAGAATGCGGAGGCCGGGccatatgaaaaaaaacaaagccccAATTCACTTTACGATTATAAGAAAAGGCAAGAAAGTGAATCATAATATTGCAAGTATGGTTAAATGTGATCAGAAAAGAACATCTTCTGCCGTTTTGTTGACTAGTGTCCACCTCCACGCAGCCATCCCAAGGTCTATAACTGAGTCAGATGGCGCGGAGCTTCCGGCAGATCCAGAGCGGGGCCAGGTGTGGAGGAGTGGCAGACTCACTGGCGCTGGGACACGGTGGCTTGAGGGGAACTGCCCGGGCCTTGGTACCTCTGTTTGGCGTGCTTCTCACAGTACATCACGTCTCCGACGCAAAAGTGGCCCCTCATCCTGAGGTTGAGACCGCAGTCTGTGCAGGTGTAGCACTCGGCGTGGCGGAAGCGGTCGTCTGCGATGCGCACGGCCAGCGTGCCGATGCTTGTGCCGCACTTCTCACAGGTGTGGATTTTTTTGACTCCTCCCACTGAGGTGCTTAGTGTGGCGGCGTTGGGCGAAAGTTTCCCTGGGAACCGCAAGGCTGCCTCTTTCTCGTCAGCCTCCAGGACCTCTTGCAGTATTTTAAAGGTGTTGGACTGACGAGGCACCGAGCGGGACTCCTTATTCTCCTGAATCATCTTGTACACCTCCGAGTCCCTGTCGAACTTCTGCATGGCAAAGTCAGAGCTCGAACTGCTGTAGAGGgaagaaatacaaatataaatcaCAGGTTGCAGGTCATCTCATTCACTAAAATCAGACGTCGAGCTCTCGGTGACGGGGTCTGTGGAAAATGTGCGTTTATGAGAGATTTGTGAGTCTGGTTTAACTGAATCCAGAGGAAGTGAAGGAAAGGGCAGCAGCTGGCTTTGAAACTTTGACCTCCGAGCATTAAGTGTAGATCGCAAACCACAGGCAAGAGGCCAAACAAGTGTCCTATCGCACATCATTCCCTCAACAGGACCCCGTCAGATCCCCTTACCAGAGGCACTGTTCCAACTCAGAAAACAGCCTCGAGGCAGAA
>TU90216
TGTGCGATTTTATTGAGTGCCacatgaaatgcaaacattataGTGTATCTCTGAGTACTGCTGTAACTGGTAAAGTGTAGTATTTCAACTCTTCACACTAAATGGCCCTGTGCATACATTatgcattttttaaatggtCTATGTTATAGAATACagttcaaaaacatcaaaaatatttgtatattGAATCCATAGTCCCTCATAAGCAACAAAACAAGTCAGCAAATACATAattcttttttcataatttctACTCAAATTCTTCATACAAAAGAAATATAGAAAAAACTCGAGGGCTTTTGGCCTGACTCtagacacacgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacatacacatacacacacacacacacacacacacacacacacacaca

Function

symbol description
pdlim2 Predicted to enable actin binding activity and muscle alpha-actinin binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to be part of filamentous actin. Predicted to be active in Z disc; adherens junction; and stress fiber. Is expressed in aortic arch; digestive system; muscle; nervous system; and otic vesicle. Orthologous to human PDLIM2 (PDZ and LIM domain 2).

NR:

description
PREDICTED: PDZ and LIM domain protein 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90215 True 1610 TUCP 0.48 3 37147741 37151646
TU90216 False 421 lncRNA 0.36 2 37098792 37151646

Neighbor

gene id symbol gene type direction distance location
lysmd3 lysmd3,LOC104959616 coding downstream 295919 36797017 ~ 36802873 (-)
mblac2 mblac2 coding downstream 309148 36782622 ~ 36789644 (-)
LOC120561325 hspb11 coding downstream 423406 36672235 ~ 36675386 (-)
ela3l LOC102777512,LOC105926862,LOC104922804,LOC103145530,LOC102238412 coding downstream 597073 36494189 ~ 36501719 (-)
fam219ab LOC101477907,LOC100693373,LOC107393783,LOC108236548,LOC106537080,LOC102237635,LOC103145537 coding downstream 639755 36445905 ~ 36459037 (-)
prlhr2a LOC103357663,LOC100712487 coding upstream 110529 37262175 ~ 37270261 (-)
got1l1 LOC102302818,LOC101464376,LOC100703097,LOC104930643 coding upstream 130934 37282580 ~ 37302980 (-)
c6h9orf78 clg9h9orf78,LOC103362310,LOC107093874,LOC102231853 coding upstream 280468 37432114 ~ 37437874 (-)
LOC120561221 LOC103362313,LOC100704182 coding upstream 326442 37478088 ~ 37535977 (-)
LOC120561222 NA coding upstream 387538 37539184 ~ 37541602 (-)
G67475 NA non-coding downstream 261 37058238 ~ 37098531 (-)
G67409 NA non-coding downstream 320657 36777625 ~ 36778135 (-)
G67345 NA non-coding downstream 417003 36679901 ~ 36681789 (-)
G67297 NA non-coding downstream 607153 36483740 ~ 36491639 (-)
G67308 NA non-coding downstream 671391 36427167 ~ 36427401 (-)
G67521 NA non-coding upstream 178992 37330638 ~ 37331120 (-)
G67550 nfu1,LOC101170349,LOC101072203,LOC100703913,LOC103362311,LOC107393744 non-coding upstream 287669 37439315 ~ 37444538 (-)
G67681 NA non-coding upstream 788235 37939881 ~ 37940295 (-)
G67687 NA non-coding upstream 837586 37989232 ~ 37989542 (-)
G67861 NA non-coding upstream 963600 38115246 ~ 38116233 (-)
arrdc3a arrdc3 other downstream 70999 36971161 ~ 37027793 (-)
LOC120561089 NA other downstream 1204089 35843314 ~ 35894703 (-)
snx2 snx2,LOC102788255 other downstream 1309749 35752436 ~ 35789043 (-)
LOC120561011 NA other downstream 2227756 34865950 ~ 34871036 (-)
trnac-gca_22 NA other downstream 2579772 34518949 ~ 34519020 (-)
adrb3a adgra2,LOC104963277 other upstream 78096 37229742 ~ 37326401 (-)
G67523 NA other upstream 192815 37344461 ~ 37345083 (-)
G67577 NA other upstream 384213 37535859 ~ 37554767 (-)
LOC120560036 NA other upstream 1184442 38336088 ~ 38344796 (-)
LOC120560826 pitpnb,LOC104952320 other upstream 2258593 39410239 ~ 39461568 (-)

Expression


Co-expression Network