LOC120561329


Basic Information

Item Value
gene id LOC120561329
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40563553 ~ 40565443 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU92124
gttgggttaaaattatgggttattttttcagagagtaacccattttctgggttatagggctAATATTTGACCCATTGCCTGGGTTGTTTGGgtttctgggttatttttcaaagagtaacccatgttctgggttataggcttggcgctctctctctctctctacaatgTATTTTTCGGTTAGTTGTCTTGACATCGGACCAGCCTATTTTCTCCTCTAAACGACACTTTGGTTCCTGGGGCAGGGAGGCGAGtctgaaagaagaaaaatagccctcagcctcagcagcatcagcctcctcctcaacacacacaggagcagctAGACCCTGTTGGGGAGCAGCCTCCGTCCATGCTGCTGGACCAGAGTCAGGAACAAACCTGAAAAACCTCTTCCGGGGCAGTGGACGTAGCCCTGGAATAAGGAACCTGAAATTCCCTCCTTCAATTGAAGACCTCCAGGACTACCAGCGGTACCACGAGGGCAGCTGCCCCCCTTCCaagcagctggaaaatgcacagTCCAAAGTGTCGAGGGTCAGGTCTTTTATATTTTACCTGGCAAAGGGACAGACTGTATTGTTCAGATTGCTATTTTAAGGAACATTGATGGCATCCAAAAgtacacagcccacctccagtcCCCAGGCAAGACCATCACAACGGCACATTTCTACCTGAGAACCATACAGCAGTTCCTCAAATACTTTCGG
>XR_005639586.1
agctagctagctagccagccaaTGTAGCCAGGTTAATGATACCACAAATGTTAGCACGCTAAAACGTAGATAACATTGATTTAGCTCGGTTTAAGAAGATGTTTATGAATAAAACGTTACTAACGATAGCTAATCCACCGACCGTTAGAAATGTAcggacattattattattggataTTTTCTGGCTGAAAAGTGAACAGAAAAAGGAGGGAAATTTGTATTCAGCTATGACGTAGCCTATTTTGAATGCTCACGTTTCCATGTTGgatgtatttttaattgtttgttaaCGTTACTAAAAGTTATGTATTAAGTACTTTATGTAgttccttttaaataaaaaatgcaaaaatgtaatGCTGACAAATCGCCGGTTCCGCCCGGGGCTGTGGTGTACCTCTGATTTATACACAACTCCCTGGAAGTTATctctgtacatttatttttaaggatGAATATACAGAAAAAATGTGTAGAGTAGATTACACTCGTTTTTAAAGGAGGGAAATTTGGGAgggaaaatctattttttttttttttaggtataaCCTTTTACATAAATCAGGCTTTGAATGATATATGAATTAATCCCTAATGTAAAAACCTTAACAATATAGAGAGGAAGGAAACAAATAGACAGggtaaaataaacatgtaattgtgtatctgtttttttgtaatagtctgaaagaagaaaaatagccctcagcctcagcagcatcagcctcctcctcaacacacacaggagcagctAGACCCTGTTGGGGAGCAGCCTCCGTCCATGCTGCTGGACCAGAGTCAGGAACAAACCTGAAAAACCTCTTCCGGGGCAGTGGACGTAGCCCTGGAATAAGGAACCTGAAATTCCCTCCTTCAATTGAAGACCTCCAGGACTACCAGCGGTACCACGAGGGCAGCTGCCCCCCTTCCaagcagctggaaaatgcacagTCCAAAGTGTCGAGGGTCAGGTCTTTTATATTTTACCTGGCAAAGGGACAGACTGTATTGTTCAGATTGCTATTTTAAGGAACATTGATGGCATCCAAAAgtacacagcccacctccagtcCCCAGGCAAGACCATCACAACGGCACATTTCTACCTGAGAACCATACAGCAGTTCCTCAAATAC
>XR_005639587.1
gttaaaattatgggttattttttcagagagtaacccattttctgggttatagggctAATATTTGACCCATTGCCTGGGTTGTTTGGgtttctgggttatttttcaaagagtaacccatgttctgggttataggcttggcgctctctctctctctctacaatgTATTTTTCGGTTAGTTGTCTTGACATCGGACCAGCCTATTTTCTCCTCTAAACGACACTTTGGTTCCTGGGGCAGGGAGGCGAGtctgaaagaagaaaaatagccctcagcctcagcagcatcagcctcctcctcaacacacacaggagcagctAGACCCTGTTGGGGAGCAGCCTCCGTCCATGCTGCTGGACCAGAGTCAGGAACAAACCTGAAAAACCTCTTCCGGGGCAGTGGACGTAGCCCTGGAATAAGGAACCTGAAATTCCCTCCTTCAATTGAAGACCTCCAGGACTACCAGCGGTACCACGAGGGCAGCTGCCCCCCTTCCaagcagctggaaaatgcacagTCCAAAGTGTCGAGGGTCAGGTCTTTTATATTTTACCTGGCAAAGGGACAGACTGTATTGTTCAGATTGCTATTTTAAGGAACATTGATGGCATCCAAAAgtacacagcccacctccagtcCCCAGGCAAGACCATCACAACGGCACATTTCTACCTGAGAACCATACAGCAGTTCCTCAAATAC

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU92124 False 710 lncRNA 0.48 4 40563553 40565443
XR_005639586.1 True 1136 lncRNA 0.40 3 40563559 40564867
XR_005639587.1 False 699 lncRNA 0.48 4 40563559 40565438

Neighbor

gene id symbol gene type direction distance location
bnip3la LOC100711031,LOC102292245,LOC101477054,LOC103356614,LOC102193827 coding downstream 271978 40278060 ~ 40291575 (-)
dpysl2a LOC100711297,LOC102201039,LOC101475506 coding downstream 294333 40221529 ~ 40269220 (-)
LOC120559991 rph3a,LOC101477332,LOC102779512,LOC104921713 coding downstream 432322 40041370 ~ 40131231 (-)
LOC120560309 hectd4 coding downstream 565695 39886603 ~ 39997858 (-)
LOC120560407 ttc28 coding downstream 722127 39449933 ~ 39841426 (-)
ciao1 ciao1 coding upstream 77286 40642729 ~ 40651595 (-)
LOC120560039 NA coding upstream 92169 40657612 ~ 40665117 (-)
LOC120561018 NA coding upstream 234156 40799599 ~ 40800695 (-)
LOC120560210 NA coding upstream 706474 41271917 ~ 41277186 (-)
LOC120560230 NA coding upstream 725167 41290610 ~ 41456856 (-)
G68802 NA non-coding downstream 18178 40476106 ~ 40545375 (-)
G68784 NA non-coding downstream 42944 40406168 ~ 40520609 (-)
G68800 NA non-coding downstream 106189 40456898 ~ 40457364 (-)
G68798 NA non-coding downstream 109232 40453687 ~ 40454321 (-)
G68793 NA non-coding downstream 129313 40433502 ~ 40434240 (-)
G68772 NA non-coding upstream 10355 40575798 ~ 40613406 (-)
G68771 NA non-coding upstream 13710 40579153 ~ 40606362 (-)
G68830 NA non-coding upstream 38498 40603941 ~ 40605434 (-)
G68839 NA non-coding upstream 64455 40629898 ~ 40630951 (-)
G68843 NA non-coding upstream 71883 40637326 ~ 40638120 (-)
ppp2r2aa LOC104921711,LOC103356615,LOC108236503,LOC104961741,LOC106520125 other downstream 232858 40313369 ~ 40330695 (-)
LOC120560061 NA other downstream 536810 40000006 ~ 40026743 (-)
G68717 NA other downstream 627707 39935372 ~ 39935846 (-)
LOC120560826 pitpnb,LOC104952320 other downstream 1101985 39410239 ~ 39461568 (-)
LOC120560036 NA other downstream 2218757 38336088 ~ 38344796 (-)
G68952 NA other upstream 358631 40924074 ~ 40950607 (-)
G68985 NA other upstream 510562 41076005 ~ 41077465 (-)
LOC120560231 NA other upstream 753753 41319196 ~ 41401901 (-)
G68897 NA other upstream 1187093 41752536 ~ 41829133 (-)
G68907 NA other upstream 1189429 41754872 ~ 41782162 (-)

Expression


Co-expression Network