tbx1 (tbx1)


Basic Information

Item Value
gene id tbx1
gene name tbx1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 6048963 ~ 6061862 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802025.1
ACACGGTCTTATTGAAATAAAACATCCAGTGCAGCGCGCagacactttttttccccctatagTGGTGCATGGGAGGCGTGGATCTCGCTCACTTTTGACATTCTCGGAGCAGTAGTCGCTTCTCCTCAAGGCAGGACTCAGATGACACCACCCCGCCACCGAAACGAGGGAAGTTCTCTCCCTATTCTCCGCGGATGAACTATGTTTTGACACAAGGACGTGTTTAGGGGTTCATCAACTGAATCTGAGCACCGGGGAGCTTTTTTTTCGCGTCTTCGCAACAGCCGTGGGAATACTTTAAGAGACCAGTCCACCCCTAGACTCTCGCACCCACGGAGCGCCGGTGGCGGAATGTGAAAAACCTCATTTTGGCGCATGTTCCTCTCCATTGTGCGCAGCCTTCTCCTGCTTTCTGCGCGGTTGGAAAGCGGAGGAGGGACGGCTTTTCGTGACTCGATCCCCTGCTTATGGACGACGGCAGTCCCCTCTCTCCAAAGGCAAATGCTTTCAGTATTGCCTCTCTGATTTCGGCTGCAGAGCAAGCAGGAAACGCAGCGTTTGACAAACAGAGCACCGGCCTGGACAAGCCAGACCCGCACAACCGCAGCTCCTTTAAAATGCACTACAGCACTGTCACCCGGGAAATGGAAGCCATATCCAGTCCGTGGCTGACGCAGCTGTCCCATTTTTGCGATGTTGCAGCCTTCACGACGAGCAGCCTGAGCAGCCTCAACACGCCGGGGGGCTACCACCTCTCTCCGTCTCCCGGGGACCCTTACAGCCAACATGAGTCCCACTTCGAGCCCTGCCCGGCCGCACAGCACAACTACAACTACCCGGGCTCTAACCCGGGCCAGGCCCCGCCGAGTGACAGCGGGACTCCCAACTGCTCCTCGTCGTCCGCCAACTCCACGCCGAACGGCAAAACCATAGTGAAGAAGAACCCCAAAGTGGCCAACATTAACGTCCAGCTGGAGATGAAAGCTTTATGGGACGAATTTAATCAGCTGGGCACGGAGATGATCGTTACCAAGGCTGGCAGGAGAATGTTTCCAACTTTCCAAGTGAAAATATTTGGGATGGATCCCATGGCAGACTACATGCTCCTGATGGACTTCTTGCCTGTAGACGACAAACGCTACAGGTATGCTTTCCACAGCTCGTCGTGGCTGGTTGCCGGTAAAGCTGACCCCGCCACACCGGGCAGGGTCCACTACCACCCGGACTCTCCGGCCAAAGGCGCCCAGTGGATGAAGCAGATCGTCTCCTTCGATAAACTCAAACTCACCAACAACCTGTTGGATGACAACGGCCATATCATTCTGAACTCCATGCACCGCTACCAGCCCAGGTTCCACGTGGTTTACGTGGACCCCCGCAAAGACAGCGAGAAATACGCCGAGGAGAATTacaaaacttttgtttttgaggAAACGCGCTTCACAGCGGTCACAGCCTACCAGAACCACCGGATCACACAGCTGAAGATAGCCAGCAATCCCTTTGCAAAGGGCTTCAGGGACTGTGATCCAGAGGACTGGCCCAGGAATCACAGACCAGGCTCTCTGCCAATAATGAGTGCCTTTGCCAGAACAAGAAACCCAATGTCATCTCCCCCTCAGCAGAATGGCACAGAGAAAGAGGACAGCAGGCGGGAGTACGAGCGGGACCCCAGCTGCACGCCCATACACGCCGACCCGGCTCACCAACTGATGTCCCGGGTCCTCAGCCCCGCCTTGCCCGTCCCGGGAGGCCTCCACGGCGTCTCACTCACCAGTGGGCGACCCAGCCCTCCACACGATCTCCGCGCAGACCCCCACGCTCTACCCCCAGACACCCTGCACCACCACCCTTACAAGTACCCCACCACCTATGAACACTACCTGGGAGCCAAGACCAGGCCGTCGCCCTATCCTTTACCCAGTATCAGAGGACACACGTACCACCACCACATGAACCCAGCCACAGCTAACATGTACTCAGCCACCAGTGGCCCCTCTAACTATGACTACGGGCCCAGATAATGGCTACTGTCCACCGGGGGCTAACGGCGCTATAGCACCGTGGGAATGGAAACTGGCAGGAAAAGGCAACACAGTCCTGTCTTATAGATGGCTTACGCAACCTGTGGGGTGCGTTCACAGGCTGAAAACTCTGCTGGATAAACCCTGCCGTATTTATTTAAAGGAAATACATCTTGGCATTAAGCACGGGCACCTGCTCCGAGTCTTTGAAGAGGTCTGCTTAGACCTTTGAACCCGAATGGCAATAGCTCCACACCTTTTACCCGAGCGGTGCAGACATTGAGCCAGCAAACAGAGGAGACAGGATGAATCTCTCCGTAACACAGACAATACCTCTGATCACAGACtggaattgatttttttttttttttttttttgatgcacTTTTTGATTTGCCTTGTTTTTATTGCTTTCAAAAAAAAGCCATACGTTATATAGTCCATCAACCTTCTAGGTAGACGAGATGTTTGCATGTTGAGCTCATCAGAGAGGGTGTCGAAACAcatccaaatgtttttttgtttgaggaattaaaaaaataaaaataatacaagATTTGATTTTGAAACGTTGTGAACATCTTGAGCCGCTCTAAGAAGCTTGTACCATGGCACTGACTTGCAGCAATtcaaagtaaataaatgaaGCAGAATGACTGTTCTGTATCtgtaaaataaacattaaattcttgtaattcattaaaa
>XM_039802026.1
CACGGTCTTATTGAAATAAAACATCCAGTGCAGCGCGCagacactttttttccccctatagTGGTGCATGGGAGGCGTGGATCTCGCTCACTTTTGACATTCTCGGAGCAGTAGTCGCTTCTCCTCAAGGCAGGACTCAGATGACACCACCCCGCCACCGAAACGAGGGAAGTTCTCTCCCTATTCTCCGCGGATGAACTATGTTTTGACACAAGGACGTGTTTAGGGGTTCATCAACTGAATCTGAGCACCGGGGAGCTTTTTTTTCGCGTCTTCGCAACAGCCGTGGGAATACTTTAAGAGACCAGTCCACCCCTAGACTCTCGCACCCACGGAGCGCCGGTGGCGGAATGTGAAAAACCTCATTTTGGCGCATGTTCCTCTCCATTGTGCGCAGCCTTCTCCTGCTTTCTGCGCGGTTGGAAAGCGGAGGAGGGACGGCTTTTCGTGACTCGATCCCCTGCTTATGGACGACGGCAGTCCCCTCTCTCCAAAGGCAAATGCTTTCAGTATTGCCTCTCTGATTTCGGCTGCAGAGCAAGCAGGAAACGCAGCGTTTGACAAACAGAGCACCGGCCTGGACAAGCCAGACCCGCACAACCGCAGCTCCTTTAAAATGCACTACAGCACTGTCACCCGGGAAATGGAAGCCTTCACGACGAGCAGCCTGAGCAGCCTCAACACGCCGGGGGGCTACCACCTCTCTCCGTCTCCCGGGGACCCTTACAGCCAACATGAGTCCCACTTCGAGCCCTGCCCGGCCGCACAGCACAACTACAACTACCCGGGCTCTAACCCGGGCCAGGCCCCGCCGAGTGACAGCGGGACTCCCAACTGCTCCTCGTCGTCCGCCAACTCCACGCCGAACGGCAAAACCATAGTGAAGAAGAACCCCAAAGTGGCCAACATTAACGTCCAGCTGGAGATGAAAGCTTTATGGGACGAATTTAATCAGCTGGGCACGGAGATGATCGTTACCAAGGCTGGCAGGAGAATGTTTCCAACTTTCCAAGTGAAAATATTTGGGATGGATCCCATGGCAGACTACATGCTCCTGATGGACTTCTTGCCTGTAGACGACAAACGCTACAGGTATGCTTTCCACAGCTCGTCGTGGCTGGTTGCCGGTAAAGCTGACCCCGCCACACCGGGCAGGGTCCACTACCACCCGGACTCTCCGGCCAAAGGCGCCCAGTGGATGAAGCAGATCGTCTCCTTCGATAAACTCAAACTCACCAACAACCTGTTGGATGACAACGGCCATATCATTCTGAACTCCATGCACCGCTACCAGCCCAGGTTCCACGTGGTTTACGTGGACCCCCGCAAAGACAGCGAGAAATACGCCGAGGAGAATTacaaaacttttgtttttgaggAAACGCGCTTCACAGCGGTCACAGCCTACCAGAACCACCGGATCACACAGCTGAAGATAGCCAGCAATCCCTTTGCAAAGGGCTTCAGGGACTGTGATCCAGAGGACTGGCCCAGGAATCACAGACCAGGCTCTCTGCCAATAATGAGTGCCTTTGCCAGAACAAGAAACCCAATGTCATCTCCCCCTCAGCAGAATGGCACAGAGAAAGAGGACAGCAGGCGGGAGTACGAGCGGGACCCCAGCTGCACGCCCATACACGCCGACCCGGCTCACCAACTGATGTCCCGGGTCCTCAGCCCCGCCTTGCCCGTCCCGGGAGGCCTCCACGGCGTCTCACTCACCAGTGGGCGACCCAGCCCTCCACACGATCTCCGCGCAGACCCCCACGCTCTACCCCCAGACACCCTGCACCACCACCCTTACAAGTACCCCACCACCTATGAACACTACCTGGGAGCCAAGACCAGGCCGTCGCCCTATCCTTTACCCAGTATCAGAGGACACACGTACCACCACCACATGAACCCAGCCACAGCTAACATGTACTCAGCCACCAGTGGCCCCTCTAACTATGACTACGGGCCCAGATAATGGCTACTGTCCACCGGGGGCTAACGGCGCTATAGCACCGTGGGAATGGAAACTGGCAGGAAAAGGCAACACAGTCCTGTCTTATAGATGGCTTACGCAACCTGTGGGGTGCGTTCACAGGCTGAAAACTCTGCTGGATAAACCCTGCCGTATTTATTTAAAGGAAATACATCTTGGCATTAAGCACGGGCACCTGCTCCGAGTCTTTGAAGAGGTCTGCTTAGACCTTTGAACCCGAATGGCAATAGCTCCACACCTTTTACCCGAGCGGTGCAGACATTGAGCCAGCAAACAGAGGAGACAGGATGAATCTCTCCGTAACACAGACAATACCTCTGATCACAGACtggaattgatttttttttttttttttttttgatgcacTTTTTGATTTGCCTTGTTTTTATTGCTTTCAAAAAAAAGCCATACGTTATATAGTCCATCAACCTTCTAGGTAGACGAGATGTTTGCATGTTGAGCTCATCAGAGAGGGTGTCGAAACAcatccaaatgtttttttgtttgaggaattaaaaaaataaaaataatacaagATTTGATTTTGAAACGTTGTGAACATCTTGAGCCGCTCTAAGAAGCTTGTACCATGGCACTGACTTGCAGCAATtcaaagtaaataaatgaaGCAGAATGACTGTTCTGTATCtgtaaaataaacattaaattcttgtaattcattaaaa

Function

symbol description
tbx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein homodimerization activity. Acts upstream of or within animal organ development; pharyngeal system development; and positive regulation of secondary heart field cardioblast proliferation. Predicted to be located in nucleus. Is expressed in several structures, including cardiovascular system; mesoderm; pharyngeal arch; shield; and vestibuloauditory system. Used to study DiGeorge syndrome and velocardiofacial syndrome. Human ortholog(s) of this gene implicated in DiGeorge syndrome; tetralogy of Fallot; and velocardiofacial syndrome. Orthologous to human TBX1 (T-box transcription factor 1).

NR:

description
PREDICTED: T-box transcription factor TBX1 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10175 TBX1; T-box protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802025.1 True 2728 mRNA 0.52 8 6048963 6061862
XM_039802026.1 False 2676 mRNA 0.52 8 6048963 6061861

Neighbor

gene id symbol gene type direction distance location
tango2 tango2 coding downstream 381754 5643204 ~ 5667209 (-)
dgcr8 dgcr8,LOC102791485 coding downstream 422578 5607031 ~ 5626385 (-)
ranbp1 ranbp1,LOC102791189 coding downstream 454059 5590574 ~ 5594904 (-)
pgam5 pgam5 coding downstream 550067 5488756 ~ 5498896 (-)
si:dkey-112e17.1 LOC103368838 coding downstream 603499 5421621 ~ 5445464 (-)
hk2 LOC103369118,LOC106531304 coding upstream 833340 6895202 ~ 6941736 (-)
ch25hl3 NA coding upstream 1099439 7161301 ~ 7169700 (-)
erlin2 LOC100709255,LOC101468631,LOC102303107,LOC102789125,LOC102208735 coding upstream 1120951 7182813 ~ 7212011 (-)
LOC120561006 NA coding upstream 1158979 7220841 ~ 7223583 (-)
znf703 znf703,LOC103397455 coding upstream 1220554 7282416 ~ 7285425 (-)
G59457 NA non-coding downstream 87813 5958908 ~ 5961150 (-)
G59441 NA non-coding downstream 406121 5642616 ~ 5642842 (-)
G59440 NA non-coding downstream 406412 5642315 ~ 5642551 (-)
LOC120560122 NA non-coding downstream 415777 5629116 ~ 5633186 (-)
G59437 NA non-coding downstream 417166 5630750 ~ 5631797 (-)
G59501 NA non-coding upstream 115889 6177751 ~ 6177970 (-)
G59505 NA non-coding upstream 158723 6220585 ~ 6220850 (-)
G59507 NA non-coding upstream 186771 6248633 ~ 6248878 (-)
G59508 NA non-coding upstream 190343 6252205 ~ 6252412 (-)
G59519 NA non-coding upstream 348523 6410385 ~ 6411300 (-)
LOC120561494 NA other downstream 457153 5589573 ~ 5591810 (-)
LOC120561493 NA other downstream 582526 5466223 ~ 5466437 (-)
LOC120560375 NA other downstream 1612647 4432844 ~ 4436316 (-)
sub1b sub1 other downstream 1618873 4424149 ~ 4430090 (-)
golph3a golph3,LOC103397487,LOC108249570 other downstream 1824395 4209748 ~ 4224568 (-)
G59521 NA other upstream 364344 6426206 ~ 6426811 (-)
G59563 NA other upstream 460897 6522759 ~ 6523674 (-)
G59739 LOC102786375,LOC102210956 other upstream 929341 6991203 ~ 6996856 (-)
G59881 NA other upstream 1522224 7584086 ~ 7584519 (-)
specc1la specc1l other upstream 1665698 7727560 ~ 7766012 (-)

Expression


Co-expression Network