tctn2 (tctn2)


Basic Information

Item Value
gene id tctn2
gene name tctn2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19251176 ~ 19255928 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802029.1
aagaaaaatgtataaaGCTGTGATTCGTTTAAGATCTGCGTTGCCAAGACATCACTTACAGTTTACAAATATGTCGACTTTATAATCTGAAGTAAACCAAATGGCTAACGTGGATAATATATTATTTCCCCAAGTATCCATTTCACGCCAGCTCACATGTGTTTTACTGTTCATTTCCTTGGCTCACACTCAAAACATTGTCGTTTTCCAGCCGTCCCGTCTCACTGCAACTGGACCAGCAGTCACTGCACTTCTGCTCGGAAACACATCCGACATCTCTTTGAATCTGAGAACAGTATCTCCATCTAATACAACaggAAGCGTTGGATCTCCATCATGTGAAGCTGAGGTAACACAGTGGGTGCTCACAAGAGAGCAGGTGGGAAAGACTGCAGTTCGGATTCAGCTGAGCCTGAATAAAAGTCTGCGTTTGTGTGGTAGGAATGAGGCAGACACAAACTGCTGTCCAAAGCCACTGTGTGTCCTGGAGACCCTTCAGGTGTCTGCCTGTGTGGGCAGTAAACCTCAGGCATCACTGCTGATCCAGGCCAAGATACACGCTCTGTTGGTTCCTGCTAATGCTGGATCTGATAATAAAACCGTCATTCCAAACCAAGTGTACCAACCACTGGGCTCTTGTCCCTGTGACCTCACATTTAGAGCCTGTGATTTACGCTGCTGCTGTGACAAGGACTGTTCCATTGAAGATTTGAAGCTGTTTGTGTCCCACTGTCTCCCAGGGCCCTTTGGTGGACAGGtctctcctgctccagattatCAGTGCTCTGTGCAGTCCTTTGAAAACTCCCCAGATTGGTTTCCATTTTTATGTGTCAATTCTCCACCTGAAAACAATCCTTACCTTGGGCTATTTTACCAGGGAAACACAATCACATCTAAACCTGGCCCATCCTTCCAAAGGCCAGTTTTGTCAGCTCCAGTGCCAGGTAGTGTTTATATACAAGGAAGTCCCATTTTCTTAATGAATGACCAGTACTTCACTGTTCCCCAGAAGGTGCTCGGGCGGTGTGTAAACAGTGCTCCTGTAGCATTTTTGAGAAATTTCAAAGTCAACTGTGTAACTTTGTTACGCTCCTGTCCAACTGGATCTCCCTTACAGACACTACCAACAAATTTGAGGACTAAAGTCAAGAATGGGCAAGGGGGTGATGTTATAGTGGATGTAATCGATGAAGTGGCCATTGACACAAGCCAGTTTATTTCAAGCACAGATGCCTCTTCAGATCAGGGACTAGCCTGTGAGAATGTGACCTTAGCACTGGATTACAAATTCTACTGGAAAGGAAATGGCATCACGAGTATCACACTGACTCACACTGTCGGGACTATCACTTTTAATAGGAGTGTTGCCATAACTACAAGGTATTCTGCCGTGTTTCTAAATGGAGAATTCATGGGTGAGCCCAACTCAGGGAACCCAGGTTATCAGGTGGGAAGGCCTGTTATTGCTGGAATTGTGGACAATTTGGACAATAATACAGGCTCAGTACAGAGGACGTCAATCAATCTTTGGAAACCAGTGAGTGATGGACTCTGTTCCACTGCTGAGATGAAACCAGTTCTGTTTGGGGAGAATTCAACATCAGGATGTCTGCTACCTGTCAGCCAACACAATCTGACTCAGTGTAGTCTCCTGAGAGAGACTGTTACTTCTCTCCAGGCTGCTTTGATTACGGCAACAAATGTGGCAAAGAGTGGAAACCCAGATCCTCTAACTATAACAGACTGGGTGAACATATCCTTTGTGACACATAACTCAAGCACAACTATGGAAGATACCATAAGTTCATGTCACAGGGTTCCATCCCACCAGCATATCCATGTTTGGAGTCTTATCACTGGCATGATAGAAGGCATACCTCAAAGGGATATCCGTGCTTTGCAAGTCAGCTACATCCTGTCTCCCTGGGCACTGGATTGTGGAGGAGGTGATGTCTCTCAATGTGTGGACCCAATGAAGACTCAGTTGTTTCCCATCACCTCCTCAGTCACCTTTACTGACATTCCTGTCAACACAGGACCACCAAAAACCAGgTTTCAGATCAACTTTACAGAGTATGACTGTAACAGGAATGATGTGTGTTGGCCTGAGCTCGCCTTCCCCATCACCAAGTATTATACAGGTGAGCCATATTCTCAGTCGCTGGCTAAGGGACTTATCTTAGTTTTCTTCTTTATCACTGCCTCGATTCTTGGGACTCCATGGAGACAAATCCGACAGGCGTGGAACTAGTGGCGCTCTCAAAAACTCTGAGAAAATGCTGAGAAAacgcaaagtaaaaaaaaatgtggaggAACACACAGATGGATGGGCTAGTGGGAGAGTGAGAGGCTAAACAAGATTAATTAAAatttctctgaaatgtaattACACCTTTTTACAATGACgttgtttataataatattgtttttacatGATTACTATATGTTTGTGGGAATGTAAATAGTTGTATTGGTGCcacattttgtaataaaaatatttttttcta

Function

symbol description
tctn2 Acts upstream of or within determination of left/right symmetry. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Joubert syndrome 24 and Meckel syndrome 8. Orthologous to human TCTN2 (tectonic family member 2).

NR:

description
tectonic-2 isoform X2

GO: NA

KEGG:

id description
K19361 TCTN2; tectonic-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802029.1 True 2510 mRNA 0.44 18 19251176 19255928

Neighbor

gene id symbol gene type direction distance location
limk2 limk2 coding upstream 24251 19207779 ~ 19226925 (+)
cmklr1 NA coding upstream 128701 19120145 ~ 19122475 (+)
sart3 sart3,LOC102781133 coding upstream 151572 19087797 ~ 19099604 (+)
LOC120560931 coro1c,LOC102291280,LOC106937262,LOC107393983,LOC107091240,LOC102218412 coding upstream 176834 19029407 ~ 19074342 (+)
ssh1a ssh1 coding upstream 228295 19002296 ~ 19022881 (+)
atp6v0a2b atp6v0a2 coding downstream 858 19256786 ~ 19269028 (+)
dnah10 dnah10 coding downstream 13608 19269536 ~ 19296674 (+)
emid1 emid1 coding downstream 42627 19298555 ~ 19357146 (+)
ewsr1b ewsr1,LOC102785556 coding downstream 108078 19364006 ~ 19372609 (+)
gas2l1 gas2l1 coding downstream 120266 19376194 ~ 19399253 (+)
LOC120560789 NA non-coding upstream 97592 19151533 ~ 19153584 (+)
G62836 NA non-coding upstream 164314 19084934 ~ 19086862 (+)
G62796 NA non-coding upstream 268553 18966083 ~ 18982623 (+)
G62755 NA non-coding upstream 386369 18864575 ~ 18864807 (+)
G62741 NA non-coding upstream 478068 18772755 ~ 18773108 (+)
G63005 LOC104920315,LOC103374896,LOC100704901 non-coding downstream 293482 19549410 ~ 19554906 (+)
G63007 NA non-coding downstream 299455 19555383 ~ 19562350 (+)
G63015 LOC107394186,LOC104941583 non-coding downstream 319633 19575561 ~ 19633642 (+)
G63016 NA non-coding downstream 326044 19581972 ~ 19584473 (+)
G63029 NA non-coding downstream 400304 19656232 ~ 19656496 (+)
tmem119a LOC103353570,LOC104946818 other upstream 169522 19076561 ~ 19081654 (+)
mvk mvk,LOC102798305 other upstream 508777 18737518 ~ 18742399 (+)
acacb acacb other upstream 565713 18661157 ~ 18685463 (+)
tpcn1 tpcn1 other upstream 776445 18441347 ~ 18474731 (+)
tbx5b tbx5,LOC103470367 other upstream 831586 18407348 ~ 18419590 (+)
rasl10a rasl10a other downstream 174473 19430401 ~ 19448950 (+)
c6h2orf68 c21h2orf68,c9h2orf68,LOC104941594,LOC103363183,LOC104920309 other downstream 503668 19759596 ~ 19763524 (+)
vps13a vps13a other downstream 1145019 20400947 ~ 20442093 (+)
wdr31 wdr31,LOC102796061 other downstream 1217723 20473651 ~ 20490586 (+)
G63480 rbm19 other downstream 1420489 20676417 ~ 20677916 (+)

Expression


Co-expression Network