tor2a (tor2a,LOC102798550)


Basic Information

Item Value
gene id tor2a
gene name tor2a,LOC102798550
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 34809084 ~ 34814495 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802045.1
CTTCGTTAAGCGTTCATGGACGCCTTCCTTGAAGTAGAAAAACTACAGATTGACCGGTTGTCCTTAGGAGAAGGTCCATTCGGTTTTTCTATCTGCCAGCAGGCAGCCAAAATGTTGGCCATCCTGTCTGTGCTGTTCTTATGCCTTTCTAATCCGGTCTGTGGCGTTTTTCAGAAACTTTACTGCAGCATATCAGAAAGCTGTGAGTGCGACTTTAAGCCAAATATCAGAGACCTGGAGTGGGATCTCTACAAGAATGTTTACGGACAGCATCTGGCCCAGGAAATTGTGTCCGAGGTGGCCAGGTTCCTAAAGAATAAAAGCCCTGAGCGGCCCCTGGTGCTGTCCTTCCATGGCTCCTCTGGGACGGGAAAGACACTCGTCAGCTCCATGCTGGGAAATCACCTGTACGGCTCGGCGATGAGCAGCCCGTACGTCCACCAGTTTGTTCCCACGCTGCACTTCTCCTTACCTGACCGGGTCAAGGAGTACAGGGAGGAGTTGAAGAGCTGGGTGCAGGGCAACCTGACGGAGTGCGCTCGCTCCGTCTTCTTTTTCGAGGAGATGGAGAAGATGCCTCCGGGTCTCATCGACGTCTTGGAGCCCTTCCTGGGTCCTTCCCACATTGTGGTTCGCACTAACTACCGCAAGGCTATCTACATTTTCATCGGCACCACAGGAGAGGAGGTGATAAAAAAATTGGCTCTGGAGAGCCGGCAGGCCGGACGGGACAGGGAGGAGATCAAGTTAGCCGAGTTGGAGGAAGCCATCGCACGGGCGGTTTACAACAGCACAACAAGCGGCTTCTTCCAGTCCAGCATCATCCAGCAGAAGCTCATCACGCGCTACGTTCCATTCCTGCCGCTGAGCCGACGCCacgtggagcgctgcgtccacTCGCAGCTCTGCCAGCGGGGCAGCTGCGGCCGCAGTGACGTGGTGGAGGCAGTAGGGGGCGACATGATCTACAGTCCCGTTCAGGGACAATACTTCTCCAGCACCGGCTGTAAGGCCGTCCCCGCCAAAATCAACCTCTTCCTGTGAGCCAAGGCGGGGACTGaagtgttgattttttttcaaggaCTGAAAGGGAAACTCCTTCTGAGGTGAgtcagtgaagagaaacagATCCCAGTTTCTGTTTCTTCCACATGGAGGTAAGAGCAGCATCAAGGACGCCTCCTGCACTTGGAATCAAGGGGAATGGAACTCGCAGCCTCCCGAATTCAATGCAGGTTTGTGCTGTCAGTGCAGAGGTTCCCTGAAGGCATCCTCGATACTAACTGTGAGCACACGAGAGTTTATTCTCTAAACATTAGTCAGTGTCTAAAGCAGGAGCCACGCTCTACCTCAAACCCAACTCTACCGTTAATTTATGAACTCTAAAGGTACAGGTACAATGCGCTTTCAGAGTTCCTGCATGCAGCAGTTAAAGAGGGAGATGAAATCTCAACCCTGTATTTCCGAAATGTTGACTTTCCATGAGCTTGAAAATGGGTATGTTAGCTGGATTAGGATACATATTTGGCTTAATTTAAAGAGTTGGTAAGTGAGCACTCATGAACTCACTCAACTTGTGTGAAAGTGTAAAAAAACCCCGCTAGAATCATAAATACAAGTTTTCACTTAGCAACACTTTAAGCGATTATGTAATTCCATGTGAGATTGAGAAATTTAAGAAACATACCAGAGCTTTTAAGGGAAGAAATTTAGGCATGCCATCATTGGCGCTCAACCAAATCcaatcaatatacagtacaggccaaaagtttggacacaccttctcattcaatgtgtttcctttttattttcatgactatttacattgtagattctcaccgaaggcatcaaaactatgaa

Function

symbol description
tor2a Predicted to enable ATP binding activity. Predicted to act upstream of or within chaperone cofactor-dependent protein refolding. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum lumen and nuclear envelope. Orthologous to human TOR2A (torsin family 2 member A).

NR:

description
torsin-2A-like

GO:

id name namespace
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K22999 TOR2A; torsin-2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802045.1 True 1860 mRNA 0.49 6 34809084 34814495

Neighbor

gene id symbol gene type direction distance location
sh2d3cb LOC103373862 coding upstream 3137 34774749 ~ 34805947 (+)
LOC120560310 LOC103361049,LOC104963356,LOC100691800,LOC102799434 coding upstream 216368 34588133 ~ 34592716 (+)
p2rx7 p2rx7 coding upstream 245933 34551118 ~ 34563151 (+)
gstt1a LOC104934872 coding upstream 273379 34527409 ~ 34535705 (+)
smarcb1a smarcb1,LOC103361055,LOC106521870,LOC108242792,LOC100696262,LOC105917974 coding upstream 370577 34427821 ~ 34438507 (+)
LOC120561071 NA coding downstream 71043 34885538 ~ 34895629 (+)
LOC120561072 NA coding downstream 137007 34951502 ~ 34952477 (+)
mymk tmem8c,LOC107720238 coding downstream 311064 35125559 ~ 35131747 (+)
slc2a8 slc2a8,slc2a6 coding downstream 331255 35145750 ~ 35160654 (+)
LOC120560891 LOC104934778,LOC100695474,LOC103374565,LOC101464334,LOC102198690 coding downstream 347088 35161583 ~ 35181996 (+)
G66769 NA non-coding upstream 299471 34508142 ~ 34509613 (+)
G66695 NA non-coding upstream 322333 34486538 ~ 34486751 (+)
G66692 LOC104949787,LOC104934882 non-coding upstream 352335 34456490 ~ 34456749 (+)
G66689 NA non-coding upstream 369156 34430942 ~ 34439928 (+)
G66652 NA non-coding upstream 527155 34187830 ~ 34281929 (+)
G66830 NA non-coding downstream 1094 34815589 ~ 34816327 (+)
G66834 NA non-coding downstream 14397 34828892 ~ 34829654 (+)
G66907 NA non-coding downstream 185783 35000278 ~ 35002196 (+)
LOC120561203 NA non-coding downstream 441166 35255661 ~ 35258072 (+)
G66997 NA non-coding downstream 574281 35388776 ~ 35417807 (+)
LOC120561070 NA other upstream 35278 34765930 ~ 34773806 (+)
cfap157 NA other upstream 281679 34514010 ~ 34527405 (+)
G66578 NA other upstream 1032686 33775925 ~ 33776398 (+)
antxr2a antxr2 other upstream 1205459 33517599 ~ 33603625 (+)
cds1 cds1,LOC103364266,LOC106922331,LOC103134889,LOC107386064 other upstream 1696268 33077246 ~ 33112816 (+)
G66832 NA other downstream 47004 34861499 ~ 34864690 (+)
LOC120561428 fam163b,LOC103374717,LOC102797860,LOC101061299,LOC102298266,LOC101485828,LOC104964271,LOC102215914 other downstream 232349 35046844 ~ 35059631 (+)
LOC120560625 cep120 other downstream 708170 35522665 ~ 35549231 (+)
G67146 NA other downstream 1026379 35840874 ~ 35852056 (+)
G67145 NA other downstream 1027039 35841534 ~ 35854161 (+)

Expression


Co-expression Network