LOC120559991 (rph3a,LOC101477332,LOC102779512,LOC104921713)


Basic Information

Item Value
gene id LOC120559991
gene name rph3a,LOC101477332,LOC102779512,LOC104921713
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 40041370 ~ 40131231 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802071.1
ATATGGCATCAGGTGCTGACTGCCCATTTACGCACCAGTGTTACACCGCTGATCCAGGGGTTTCCCTCCCAGGGTACCAAGGGCTTTCCATCCTCGACCACGCAGGAGAGAAAGCCAGTTCCCACGCACTGTGATGCTGGGGACCCGCTTCGGTGACTCCAGCAACAGACTATACGCTCCTCCAggccaaaaaaaaccaaacaggCGTCCTCCTGATGACAGGCACCATACGCAACGACTGACTCCGTCCGTGCTGGTATCCAGGCATTCAGTCCGCATCATTccctgacagagagagacacacggagacgcacagagagagagagagagagaaagagagagaaaagcacGCCTGGATCCTTCTCAGACGCTGACCAATAACATGACGGACACGGTGATGAGCAGCAGCGCGGACCGCTGGCAGTCCAACGACCGGCAGAGGACCGTGCACGCAGGTGATAAAGAGCAGGGCAACTGGACGATGCAGCCGGGCCCCGGTCCTGGTCCGGACCTGACGGACGAAGAGAAAGAAATCATAAACAGCGTGATCGCTCGAGCAGAGAAGATGGAGGCCATGGAGCAAGAGAGAATCGGGCGCTTGATAAACCGTCTGGACGACATGAAGAAGACCGTGTGTGGCGATGGACAGTCCCGCTGTTTGCTGTGCGGCGAGCAGCTGGGCTCCCCCGGGGTCAGCTCCGTGGTGTGTGAGGACTGCAAAAAGAACATGTGTACCAAGTGTGGCACCCAGTGCAGCAGTCGGCCCCGCGCCGTCTGGCTCTGCAAGATCTGCAGAGAACAGCGAGAGGTGTGGAAGAGGTCCGGTGCCTGGTTCTTCAAAGGTTTCCCGAAGCATTTCCTGCCGTCGCCCATGCCGTTATCTAAAGCCCAGGCGGGAGCCCAGGAGGCGGCAGAGCGCAAAGAGCCGCCAGCCTCTGGGCCCAGGCAGGCAGCGACCCAACCACAACACCCAGGACCCGAGCCGCAGGGCCGCGCCGGTTACCCGTCTGTGGCCCCTAAACCATCAGTTGCACGCATGGCGACAGGCGGGGCGGGCCCTGAAGAGGTGGCGCCGGGCAGCCCCGTGGTGATGAAGAAGATGGTGCCCGTCCAGAGCTCCAGACCTCAGCCGGCTGCCGCCCAGCAGGGCCCAGTGGCAGGAGATGGAGCATCGTACTCCTCTGGTGCGGTTCCTCCGGAGCAGAGAGCGCCTCTCGTAGCAGCCAGAGAGGACCGGAAACAGCCCGTTGCCTACAGCGCTCCTCCCCCCGCCCGACAGCAACCTCCCccggctgaggaggaggaggaggccaaCGACTATGACTCCGATGAAGCCACCACCCTGGGCTCTCTGGAGTTCAGTCTGCTCTACGAACAGGAAAGCAACAGCCTCCACTGTAGCATCCTCAAAGCAAAGGGACTTAAGCCCATGGACTCAAACGGACTGGCAGATCCTTATATCAAACTTCATCTGCTGCCTGGGGCGAGTAAGTCTAACAAGCTGCGCACAaagaccttgaggaacaccCGCAACCCCGCGTGGAACGAGACGCTCACCTACCACGGCCTGACGGATGACGACATGCAGCGTAAGACCCTCAGGCTGTCTGTCTGCGACGAAGACAAGTTTGGGCATAATGAGTTTATCGGGGAAACCCGAGTGGCGCTGAAGAAACTGAAGATGAACCAGAAGAAGAACTTCAACGTGTGTCTCGAGAGAGTCGTCCCTACGAAGAGAACTGCAACCGCGGGCGGAGCCAGAGGCATCTCTCTCTACGAAGATGAGCCGGGGAAAGACGGCGGCGAGGTAGAGGAGCGTGGTCGCATCCTGATCTCCCTCATGTACAGCACCCAGCAGAACCGTCTCCTGGTGGGCGTCGTGCGCTGCGTTCACCTGGCTGCCATGGACGCTAACGGCTACTCCGACCCATACGTCAAAATATGTCTGAAACCTGACATGGGGAAAAAGGCCAAGTGCAAAACACAGATCAAGAAGAGGACTTTGAACCCAGAGTTTAATGAGGAATTCGGATATGAAATCAAACACAGCGAACTGGCCAAGAAGGTTTTAGATATCTCTGTGTGGGATTATGATATTGGGAAGTCCAACGACTACATCGGTGGCTGTCAGCTGGGCATCACTGCCAAAGGAGAGAGGCTGAAGCACTGGTACGAGTGTCTGAAGAACAAGGACAAGAGGATCGAGCGCTGGCACACCTTGTATAGCGGGAATCACGTCACTAGTGATTAACCACtcgcactgcacacatacagcatGAGCTAAAACCTCCCCACTTGGTTTGCATTGCACTTTTCTTTCCCCATTTCATTGTGTTCTCTATTCTTTCACTACCTGACCATCACACAGGCTTACTCGCCTCCCTTCCCCGGATGTATACTCTTCTTTCCTGTCCCCTTATTATACAATGTCTCTGCCTGTGCTGACACTTAAAGGGTAACGTCATTTTCTTTCCAATCTGAACCCTGTTTtatcatgtttttgtgtctaagggactgatgggaacaacaatttttttaaattggtccaGCATTAAATTGGACCGAAGAGAAACAAGCTGTGCTGTAACGTTAATGTGCAATTGTGTCAATCtctgtccactaaaagttctgttgttgccgctgacaga
>XM_039802073.1
ATATGGCATCAGGTGCTGACTGCCCATTTACGCACCAGTGTTACACCGCTGATCCAGGGGTTTCCCTCCCAGGGTACCAAGGGCTTTCCATCCTCGACCACGCAGGAGAGAAAGCCAGTTCCCACGCACTGTGATGCTGGGGACCCGCTTCGGTGACTCCAGCAACAGACTATACGCTCCTCCAggccaaaaaaaaccaaacaggCGTCCTCCTGATGACAGGCACCATACGCAACGACTGACTCCGTCCGTGCTGGTATCCAGGCATTCAGTCCGCATCATTccctgacagagagagacacacggagacgcacagagagagagagagagagaaagagagagaaaagcacGCCTGGATCCTTCTCAGACGCTGACCAATAACATGACGGACACGGTGATGAGCAGCAGCGCGGACCGCTGGCAGTCCAACGACCGGCAGAGGACCGTGCACGCAGGGGGCAACTGGACGATGCAGCCGGGCCCCGGTCCTGGTCCGGACCTGACGGACGAAGAGAAAGAAATCATAAACAGCGTGATCGCTCGAGCAGAGAAGATGGAGGCCATGGAGCAAGAGAGAATCGGGCGCTTGATAAACCGTCTGGACGACATGAAGAAGACCGTGTGTGGCGATGGACAGTCCCGCTGTTTGCTGTGCGGCGAGCAGCTGGGCTCCCCCGGGGTCAGCTCCGTGGTGTGTGAGGACTGCAAAAAGAACATGTGTACCAAGTGTGGCACCCAGTGCAGCAGTCGGCCCCGCGCCGTCTGGCTCTGCAAGATCTGCAGAGAACAGCGAGAGGTGTGGAAGAGGTCCGGTGCCTGGTTCTTCAAAGGTTTCCCGAAGCATTTCCTGCCGTCGCCCATGCCGTTATCTAAAGCCCAGGCGGGAGCCCAGGAGGCGGCAGAGCGCAAAGAGCCGCCAGCCTCTGGGCCCAGGCAGGCAGCGACCCAACCACAACACCCAGGACCCGAGCCGCAGGGCCGCGCCGGTTACCCGTCTGTGGCCCCTAAACCATCAGTTGCACGCATGGCGACAGGCGGGGCGGGCCCTGAAGAGGTGGCGCCGGGCAGCCCCGTGGTGATGAAGAAGATGGTGCCCGTCCAGAGCTCCAGACCTCAGCCGGCTGCCGCCCAGCAGGGCCCAGTGGCAGGAGATGGAGCATCGTACTCCTCTGGTGCGGTTCCTCCGGAGCAGAGAGCGCCTCTCGTAGCAGCCAGAGAGGACCGGAAACAGCCCGTTGCCTACAGCGCTCCTCCCCCCGCCCGACAGCAACCTCCCccggctgaggaggaggaggaggccaaCGACTATGACTCCGATGAAGCCACCACCCTGGGCTCTCTGGAGTTCAGTCTGCTCTACGAACAGGAAAGCAACAGCCTCCACTGTAGCATCCTCAAAGCAAAGGGACTTAAGCCCATGGACTCAAACGGACTGGCAGATCCTTATATCAAACTTCATCTGCTGCCTGGGGCGAGTAAGTCTAACAAGCTGCGCACAaagaccttgaggaacaccCGCAACCCCGCGTGGAACGAGACGCTCACCTACCACGGCCTGACGGATGACGACATGCAGCGTAAGACCCTCAGGCTGTCTGTCTGCGACGAAGACAAGTTTGGGCATAATGAGTTTATCGGGGAAACCCGAGTGGCGCTGAAGAAACTGAAGATGAACCAGAAGAAGAACTTCAACGTGTGTCTCGAGAGAGTCGTCCCTACGAAGAGAACTGCAACCGCGGGCGGAGCCAGAGGCATCTCTCTCTACGAAGATGAGCCGGGGAAAGACGGCGGCGAGGTAGAGGAGCGTGGTCGCATCCTGATCTCCCTCATGTACAGCACCCAGCAGAACCGTCTCCTGGTGGGCGTCGTGCGCTGCGTTCACCTGGCTGCCATGGACGCTAACGGCTACTCCGACCCATACGTCAAAATATGTCTGAAACCTGACATGGGGAAAAAGGCCAAGTGCAAAACACAGATCAAGAAGAGGACTTTGAACCCAGAGTTTAATGAGGAATTCGGATATGAAATCAAACACAGCGAACTGGCCAAGAAGGTTTTAGATATCTCTGTGTGGGATTATGATATTGGGAAGTCCAACGACTACATCGGTGGCTGTCAGCTGGGCATCACTGCCAAAGGAGAGAGGCTGAAGCACTGGTACGAGTGTCTGAAGAACAAGGACAAGAGGATCGAGCGCTGGCACACCTTGTATAGCGGGAATCACGTCACTAGTGATTAACCACtcgcactgcacacatacagcatGAGCTAAAACCTCCCCACTTGGTTTGCATTGCACTTTTCTTTCCCCATTTCATTGTGTTCTCTATTCTTTCACTACCTGACCATCACACAGGCTTACTCGCCTCCCTTCCCCGGATGTATACTCTTCTTTCCTGTCCCCTTATTATACAATGTCTCTGCCTGTGCTGACACTTAAAGGGTAACGTCATTTTCTTTCCAATCTGAACCCTGTTTtatcatgtttttgtgtctaagggactgatgggaacaacaatttttttaaattggtccaGCATTAAATTGGACCGAAGAGAAACAAGCTGTGCTGTAACGTTAATGTGCAATTGTGTCAATCtctgtccactaaaagttctgttgttgccgctgacaga

Function

symbol description
rph3a Predicted to enable several functions, including anion binding activity; calcium-dependent phospholipid binding activity; and metal ion binding activity. Predicted to be involved in dendritic spine organization and regulation of NMDA receptor activity. Predicted to act upstream of or within spontaneous neurotransmitter secretion. Predicted to be located in cytosol; neuron projection; and secretory vesicle. Predicted to be extrinsic component of membrane. Predicted to be part of protein-containing complex. Predicted to be active in cholinergic synapse and neuromuscular junction. Predicted to be extrinsic component of synaptic vesicle membrane. Predicted to colocalize with Golgi apparatus.

NR:

description
rabphilin-3A isoform X3

GO: NA

KEGG:

id description
K19938 RPH3A; rabphilin-3A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802071.1 True 2648 mRNA 0.56 18 40041370 40131231
XM_039802073.1 False 2636 mRNA 0.56 17 40041370 40131231

Neighbor

gene id symbol gene type direction distance location
LOC120560309 hectd4 coding downstream 43512 39886603 ~ 39997858 (-)
LOC120560407 ttc28 coding downstream 199944 39449933 ~ 39841426 (-)
mn1b mn1,LOC102781903 coding downstream 646548 39366677 ~ 39394822 (-)
zgc:153044 LOC104946530 coding downstream 1193417 38845687 ~ 38847953 (-)
ube2d4 LOC104946535,LOC101482088,LOC101172587,LOC101069170,LOC108236573,LOC107393720,LOC103397347,LOC104935329 coding downstream 1367478 38662069 ~ 38673892 (-)
dpysl2a LOC100711297,LOC102201039,LOC101475506 coding upstream 90298 40221529 ~ 40269220 (-)
bnip3la LOC100711031,LOC102292245,LOC101477054,LOC103356614,LOC102193827 coding upstream 146829 40278060 ~ 40291575 (-)
ciao1 ciao1 coding upstream 511498 40642729 ~ 40651595 (-)
LOC120560039 NA coding upstream 526381 40657612 ~ 40665117 (-)
LOC120561018 NA coding upstream 668368 40799599 ~ 40800695 (-)
G68715 NA non-coding downstream 69950 39914387 ~ 39971420 (-)
G68706 NA non-coding downstream 157736 39883045 ~ 39883634 (-)
G68672 NA non-coding downstream 527252 39513850 ~ 39514118 (-)
G68052 NA non-coding downstream 574393 39466552 ~ 39466977 (-)
LOC120559961 NA non-coding downstream 872807 39162719 ~ 39168563 (-)
G68737 NA non-coding upstream 11750 40142981 ~ 40143261 (-)
G68739 NA non-coding upstream 21829 40153060 ~ 40154319 (-)
G68745 NA non-coding upstream 60999 40192230 ~ 40193589 (-)
G68746 NA non-coding upstream 66062 40197293 ~ 40214925 (-)
G68687 NA non-coding upstream 80892 40212123 ~ 40269877 (-)
LOC120560061 NA other downstream 14627 40000006 ~ 40026743 (-)
G68717 NA other downstream 105524 39935372 ~ 39935846 (-)
LOC120560826 pitpnb,LOC104952320 other downstream 579802 39410239 ~ 39461568 (-)
LOC120560036 NA other downstream 1696574 38336088 ~ 38344796 (-)
G67577 NA other downstream 2486603 37535859 ~ 37554767 (-)
ppp2r2aa LOC104921711,LOC103356615,LOC108236503,LOC104961741,LOC106520125 other upstream 182138 40313369 ~ 40330695 (-)
G68952 NA other upstream 792843 40924074 ~ 40950607 (-)
G68985 NA other upstream 944774 41076005 ~ 41077465 (-)
LOC120560231 NA other upstream 1187965 41319196 ~ 41401901 (-)
G68897 NA other upstream 1621305 41752536 ~ 41829133 (-)

Expression


Co-expression Network