LOC120560022 (slc18a1,LOC100703472,LOC106527823)


Basic Information

Item Value
gene id LOC120560022
gene name slc18a1,LOC100703472,LOC106527823
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15045882 ~ 15064841 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802120.1
TCAGGTTTGCTTTTTATACCCTTCCCTCTCCCCTCTGATCCGTCCCGTCTCTCAGAAGTTTTGAAGGTGCGTTTGAAGCTCGACCGCATCAGTCGGCGGAGCCAGCGCCGCCTTCGCTTCCTTCCTGGAAGCCCCGCGGGCGGCCTCAGGTGAGGGTGGGACGTTTGATACATGACACCGCAGAGACCACTGAGAGATTAAAACACACCTGGAGACACGAGACAGGTCAGATATATAGTGTGTCCATCAGCAGCTGAAGAAACCAGAACAAGAGCATCACTTGCCAGGTAGGAGCCACCTGTCTCTTTGACACAGAAACCAGCTGTTTGGAGAATCAAATCAACGAaaCATGGCCTGGCTCCGTCAGAGTCGAGGTTCTCCCAGACTTGtcctggtggtggtgtgtgttgcTCTATTGCTCGACAACATGCTGCTCACTGTGGTCGTGCCGATCATCCCAACCTTCCTCTACGCCATGGAGCATCCTAGTCCAGAGCCCCAGACCGCCCAGCCATCCCTGCTCTCTCTGCCCACCCTTGGTGCCTCACGCTTGGGCACTGTGCCCTCCCAGTCCCCCTCCCCGAGGTCAAACCTCCGGACCTTCAGCCAGACCTCCCAGAGCTCACAGCTCCCTCGGCCCAGCCATAGTGCACCGTACCACGGTACACAATCAGAGCTGAGTCCCAAGTCGTCTCCTCTGGTGTCTCTGTTCGACAATTCGACATTCAGTCTGCAGGAGATCCTGACCGAACCCACCCCAGACCAGAGCAGCCCGACCACAGAGCTGCAGAGCAACGAAACCACTAACGCTACAgAGTCCTCCTGTCTTCAGGACAGTGCGTTTCTGGAAGAGGAAAATGTTCGTGTTGGTTTGTTGTTTGCCTCTAAAGCTCTCGTCCAGCTGCTTATCAACCCGTTTGTCGGCCCGCTCACCAACAGGGTTGGGTATCACATCCCCATGTTTGCTGGTTTCATCATCATGTTTGGGTCAACTATCATGTTTGCGTTCTCAGGGACGTACGCTCTGCTGTTCCTCGCTCGCTCTCTGCAGGGAATCGGCTCATCCTTCTCGTCTGTAGCAGgtctGGGTATGTTGGCCAGTGTGTACACTGATGATGAGGAGAGAGGCATCGCCATGGGCATCGCACTGGGAGGACTGGCTATGGGGGTCTtgaTTGGAGCTCCATTTGGCAGTGTGATGTACGAGTTTGTGGGGAAGCGTGCTCCCTTCCTGATTTTGGCCTTCCTGGCTATGTTTGACGGAGCATTACAGCTGTTCATCCTGCAGCCTTCAAAGATTTCTCCAGGGagtgTGGAAGGGACTCCGTTACTGACTCTGTTAAAGGATCCGTACATTCTCATCAGTGCAGGTTCTCTGTGTTTCGCCAACATGGGTGTCGCCATTTTAGAGCCGACTCTGCCCATCTGGATGATGCAGACCATGTGCTCCCCTAAATGGCAACTTGGTATGGCCTTCCTCCCTGCCAGTATCTCCTACCTGATAGGAACAAACCTGTTCGGTGTTCTGGCCAACAAGATgggacgGTGGCTCTGCTCCATGTTAGGGATGTTTATCGTTGGCATCAGTTTGATGTGTgtTCCTTTTGCCACCAGTATCTATGGTCTGATTGGACCAAACGGAGGTCTGGGCTTCGCTATAGGTATGGTGGACTCCTCCATGATGGCCATCATGGGTTACCTGGTCGACATCCGTCACGCCTCTGTCTATGGCAGCGTCTACGCCATTGCTGACGTTGCGCTGTGTATGGGGTTTGCTATAGGACCATCCACAGGGGGTGCTCTGGTTCAGGCAGTGGGTTTTCCCTGTCTCATGGTGTTTATCGGGGTGATCAACATTCTGTATGCTCCACTCTGCTTCCTGTTACGTAACCCTGCTGTCAGAGAGGAGAAAATGGCGATCATCGACCAGGAGTGTGTGATGCACAGgaaaagctacaacacacagAAGGAGAGTCGTGAGTTTCCTCTGAGCGACTACAGTGAAGAAGACACAGaggagtga
>XM_039802121.1
tgtgtgtgtgagataaggTCTCCAGCCTGCAGGTTGTTCCAGGCTTCAATAAAAGGACAGCAGATGCTCACaattactgacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccagcaacgCAAATGATACACCCTCTgacctgtgcgtgtgtgtgtccataaTGTCAGTTTTTATCAGAATAAAAGAGAAGAGACATCCTCCTCCGTCCTTCCTTCAGTCCTTCCTTTAGTCCTTCCCCATCTCCTTGTcgcctctgtcctctcctctgtcctcccctcAGGTCAGATATATAGTGTGTCCATCAGCAGCTGAAGAAACCAGAACAAGAGCATCACTTGCCAGGTAGGAGCCACCTGTCTCTTTGACACAGAAACCAGCTGTTTGGAGAATCAAATCAACGAaaCATGGCCTGGCTCCGTCAGAGTCGAGGTTCTCCCAGACTTGtcctggtggtggtgtgtgttgcTCTATTGCTCGACAACATGCTGCTCACTGTGGTCGTGCCGATCATCCCAACCTTCCTCTACGCCATGGAGCATCCTAGTCCAGAGCCCCAGACCGCCCAGCCATCCCTGCTCTCTCTGCCCACCCTTGGTGCCTCACGCTTGGGCACTGTGCCCTCCCAGTCCCCCTCCCCGAGGTCAAACCTCCGGACCTTCAGCCAGACCTCCCAGAGCTCACAGCTCCCTCGGCCCAGCCATAGTGCACCGTACCACGGTACACAATCAGAGCTGAGTCCCAAGTCGTCTCCTCTGGTGTCTCTGTTCGACAATTCGACATTCAGTCTGCAGGAGATCCTGACCGAACCCACCCCAGACCAGAGCAGCCCGACCACAGAGCTGCAGAGCAACGAAACCACTAACGCTACAgAGTCCTCCTGTCTTCAGGACAGTGCGTTTCTGGAAGAGGAAAATGTTCGTGTTGGTTTGTTGTTTGCCTCTAAAGCTCTCGTCCAGCTGCTTATCAACCCGTTTGTCGGCCCGCTCACCAACAGGGTTGGGTATCACATCCCCATGTTTGCTGGTTTCATCATCATGTTTGGGTCAACTATCATGTTTGCGTTCTCAGGGACGTACGCTCTGCTGTTCCTCGCTCGCTCTCTGCAGGGAATCGGCTCATCCTTCTCGTCTGTAGCAGgtctGGGTATGTTGGCCAGTGTGTACACTGATGATGAGGAGAGAGGCATCGCCATGGGCATCGCACTGGGAGGACTGGCTATGGGGGTCTtgaTTGGAGCTCCATTTGGCAGTGTGATGTACGAGTTTGTGGGGAAGCGTGCTCCCTTCCTGATTTTGGCCTTCCTGGCTATGTTTGACGGAGCATTACAGCTGTTCATCCTGCAGCCTTCAAAGATTTCTCCAGGGagtgTGGAAGGGACTCCGTTACTGACTCTGTTAAAGGATCCGTACATTCTCATCAGTGCAGGTTCTCTGTGTTTCGCCAACATGGGTGTCGCCATTTTAGAGCCGACTCTGCCCATCTGGATGATGCAGACCATGTGCTCCCCTAAATGGCAACTTGGTATGGCCTTCCTCCCTGCCAGTATCTCCTACCTGATAGGAACAAACCTGTTCGGTGTTCTGGCCAACAAGATgggacgGTGGCTCTGCTCCATGTTAGGGATGTTTATCGTTGGCATCAGTTTGATGTGTgtTCCTTTTGCCACCAGTATCTATGGTCTGATTGGACCAAACGGAGGTCTGGGCTTCGCTATAGGTATGGTGGACTCCTCCATGATGGCCATCATGGGTTACCTGGTCGACATCCGTCACGCCTCTGTCTATGGCAGCGTCTACGCCATTGCTGACGTTGCGCTGTGTATGGGGTTTGCTATAGGACCATCCACAGGGGGTGCTCTGGTTCAGGCAGTGGGTTTTCCCTGTCTCATGGTGTTTATCGGGGTGATCAACATTCTGTATGCTCCACTCTGCTTCCTGTTACGTAACCCTGCTGTCAGAGAGGAGAAAATGGCGATCATCGACCAGGAGTGTGTGATGCACAGgaaaagctacaacacacagAAGGAGAGTCGTGAGTTTCCTCTGAGCGACTACAGTGAAGAAGACACAGaggagtgacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctgatgaTGTCCATGTTGTGATGTTTTCTTCACCAAACACGTTTTAACCTTCATCATTAGACTTCCTGTCGTCACACAGTCAGAACAGCAACATTGAACACTTCTTAAAGGGACAGTGTCCCCTTACATGTCTTTAATTGCTACATTAAATATAATTAATCTGATTAATCATCAGTTCACACAGTCAGGGTTCtgtaaaaaatgtcattattaAAGCATGGAGGCTGTGACAGATGTTTTGATGCCTTGTGCATGTTTACAGAGTTACTAATTTGAACATATTTATGCAAATTCCATTAAAAGATGCCTGATTGCCTCCAAATTACTGTTCACTAAGCCCCGCCCCTTCTTAGTTGTTGCTACCCGTGTCAATCTTTGTGTTCTAAAATGTTACACACAGTTTACAATGACAACAGCAGGAATGTATAATAACTACATATAATCTGTACTCCTgccttctccaaactgggggcatGATGACCGCCATTTgctgtaggtaatacactgactatggataatTACCATATACAAACCCACTTCAAaagatccaaactatccctttaagattTGGACGTTGTTTatcgtgaaaaaaaaaaagtctcctaCACCAAACCCTTTAATTATTTTAAGGGGGTTTGGCATCAAGTAAGGAGATTTCCAAGTAAATGTGAGTTTGCTTTAGGGAACATGTGTTGCTCATCATTAATCTTTTTTAATTTGACCAAAGTGATGTAAAACTGAACCTGAGTCTGTATCTGACCTCTAACCTGTGTCGCCATTAAAACCTTCTATAACCTA

Function

symbol description
slc18a1 Predicted to enable serotonin:sodium symporter activity. Predicted to be involved in aminergic neurotransmitter loading into synaptic vesicle. Predicted to be located in clathrin-sculpted monoamine transport vesicle membrane. Predicted to be active in synaptic vesicle membrane and terminal bouton. Implicated in bipolar disorder and schizophrenia. Biomarker of von Hippel-Lindau disease.

NR:

description
PREDICTED: chromaffin granule amine transporter

GO:

id name namespace
GO:0006855 drug transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08155 SLC18A1_2, VMAT; MFS transporter, DHA1 family, solute carrier family 18 (vesicular amine transporter), member 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802120.1 False 2023 mRNA 0.54 18 15046753 15064841
XM_039802121.1 True 3027 mRNA 0.48 17 15045882 15061352

Neighbor

gene id symbol gene type direction distance location
LOC120560533 NA coding downstream 54737 14989147 ~ 14991145 (-)
tsc1a tsc1 coding downstream 420685 14600261 ~ 14625197 (-)
ak8 NA coding downstream 446740 14582084 ~ 14599142 (-)
ddx31 ddx31,LOC102778005 coding downstream 465719 14566031 ~ 14580163 (-)
qsox2 qsox2,LOC102781541 coding downstream 498019 14535268 ~ 14547863 (-)
ppiaa LOC107103142,LOC106904245,LOC103470758,LOC106953379,LOC103129635 coding upstream 5426 15070267 ~ 15076395 (-)
LOC120560949 LOC103368073,LOC103397982 coding upstream 14044 15078885 ~ 15104108 (-)
ogdha LOC103368074,LOC101476977,LOC103397981 coding upstream 44175 15109016 ~ 15152609 (-)
adam9 adam9 coding upstream 93540 15158381 ~ 15199350 (-)
ercc6l LOC102777350 coding upstream 137298 15202139 ~ 15211704 (-)
G61706 NA non-coding downstream 18487 15026519 ~ 15027395 (-)
G61699 NA non-coding downstream 52102 14993477 ~ 14993780 (-)
LOC120560531 NA non-coding downstream 60697 14983467 ~ 14985185 (-)
G61695 NA non-coding downstream 80097 14965307 ~ 14965785 (-)
G61631 NA non-coding downstream 178225 14802564 ~ 14867657 (-)
G61711 NA non-coding upstream 3701 15068542 ~ 15068893 (-)
G61740 NA non-coding upstream 41424 15106265 ~ 15129963 (-)
G61742 NA non-coding upstream 88153 15152994 ~ 15180419 (-)
G61813 mak16 non-coding upstream 238888 15303729 ~ 15306067 (-)
G61837 ppp2cb,LOC102205414,LOC106587035,LOC100710281,LOC105025380 non-coding upstream 360710 15425551 ~ 15427495 (-)
tti2 tti2 other downstream 4502 15029876 ~ 15041380 (-)
LOC120559984 NA other downstream 28066 15013533 ~ 15017816 (-)
trnas-gcu_3 NA other downstream 77305 14968496 ~ 14968577 (-)
trnas-gcu_2 NA other downstream 77722 14968079 ~ 14968160 (-)
trnas-gcu_1 NA other downstream 78122 14967679 ~ 14967760 (-)
sdhaf1 sdhaf1,LOC102800057 other upstream 151709 15216550 ~ 15218422 (-)
LOC120560831 NA other upstream 160129 15224970 ~ 15232693 (-)
mfsd14bb LOC103398013,LOC102210719 other upstream 187774 15252615 ~ 15278184 (-)
LOC120560838 NA other upstream 304185 15369026 ~ 15402324 (-)
LOC120560105 LOC103362503 other upstream 1087579 16152420 ~ 16452488 (-)

Expression


Co-expression Network