LOC120560024 (lix1)


Basic Information

Item Value
gene id LOC120560024
gene name lix1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18239308 ~ 18244773 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802123.1
GGATGTTCACacgggagaggaggaggaggaggaggggagaaagGCAGAGTGGAGGGACTTTCAGATTTTGAGCTTATTCCTTATGATGTTCCCATTCTGAGCTGTGATGGCAGTGGTGGTTGCTCATTTATAGGGTCATGTTTGCTGTTTTGATGGACCATTTTGATGTGACAAGTGGACTTATTGTTTGAGGCAGCTGTGGAAGTAAAGATGAGTAACGTGGAAGTGGAGGACAGCATCATGTCATACCTGTCACAGAGTGAGACCGACACCAGCCCCAAAGACTTGAATGTAGTGGTCATGCTCCATAACTTCTGggagcagagacagacaggtgggtTAAATGGTTCCTCCAGTGAATCAGATGGTTCTGTAGCCATCCAGACAGAGAGCTTGCTGCTGTATGAGTCTGCACCGTCCCCTGGTCCTCCATACGTCTGCTATGTCACCCTGCCTGGAGGAAGCTGCTTTGGTAACTATAAGGTGTGTGACACTCAGGCAGAGGCTCGGAGGGATGCAGCTCGCGTGGCCCTGATGAACTCACTTGTGAACGAGCTGCCGTGTCGACGTATTAACCCTCAGTTCATCGCTCAGAGTTTACAGCAGGCGGCCACAGACAGTGCTGTCTCTATAGAAGATGCTTGTGATTCAAGCACCAGTATAGGGacctacagtttgctgctccacTCCTACATAGGAAGGACCATGCTTGAGTTCCAGGAGATGATGACAATTTTCCAGTTGTTGCAGTGGAACGGGACACTGAAGGCTCTGAGGGAAAGGCAGTGCTCTCGACAGAGTGTGATTTCCTATTACTCTCAGCGAGGACTTGATGAGTACATGCGCAGCAGCATGGCTCTGGATTGGCTCGGACGGGAGCAGAGGTTACCGGGTCGACTCGGGGAGGAGCTGCAGGTGGCGCAGAGGGAGCTGGTGTTGGCCCGGCGGCGAGGCATAGAGCTGCGCTTCTACAAGGAAAAGACAGAGATCCTCAGCTTGGCTCTAAGTCAAGCATACACTCACCACACACCTGAGGACTACAGCGAGGCGCCCAGTCACACATACAAGCAAGAGCAGCTTCctttacacacattatacagcCAGGACACGGAAGTCCAGATAACTCCACCATACAGTCCTTCACCAACCCTCCATAAAAAGCAAACAGTCTTACAAACCTCTGGCAAACACATGCCCTACTAAAAGTCCTTCACCGTGCTCAGACTTATGTGCCTTTAAATGACTTTGAAAAGACTGAAGCAGAAGGTAGAGGATGGAAGTTGTCATTTGAATGAGCTAAAACTCTGCCACTGGAAATTTGCATCTGTTTGGGAGAACAGAACATATCAAGCATGGTCATGGTCTTCAGGTTTAGTGTACACATAAGTGTTCTGTAAGCAAAAGAATTACAGCTATTGTGTTAAATTTTGTAGTAATACTGTTCTAACCTTATTAACACTCTTTTGTGACCATAGAACTTAAAGCTATGTGTAGTGTATTTACAACTTTAACCAAAAGAAATACAGCAGTTAAATGATTTAAATCCATTAGCAGAGAATGTTGGTAAACTGTAGCAGTGACCATCTATCTATGTTTGTACAAAGAGCATTCTATTTCACTGCCTTAGCTTTTATGTAAGTTCAGTGATGTCTTTTTGAGAAGTATATTATGATACACAATGTGAgttttaaaattatatattaaGCCTATGAACTGCTTCATCTACCAGCAACTCAGTACTTTTTCATGCCTCACTCTTcctttctccttctctgtctaGCATGCCATCTGGCTTGTCAATTTTCTAAATGGAAATTACTTGCCAGGGCGCTTCAGCATACTGACTGACTGTGTGACATGTTGGATGACGTGTTGGCTGGATGCTATGAGAGTTTGTCATGATTGTGACACACATGTATTTGATAATGTCAGAGAGCAGCTGGAGATACAATACAATCTGGTTTGTAGTATCATGAAATAGAGGATGGCTGGTCACGTCAACTGCAGCTATAATTATGATAAATGATCATGATAAAATCTTTGGTTTGGTTGGGTGGTGGGTGTAAATGCATTTTAAagggaaatgtttttgtttgttttaaaaaaaaatcattataatatacatttgtaaataaatgttttctgtgACTCATGACTTGTCATGTGCATTCATATTAAACCAACTCTGA

Function

symbol description
lix1 Predicted to be involved in autophagosome maturation. Predicted to be active in cytoplasm. Orthologous to human LIX1 (limb and CNS expressed 1).

NR:

description
PREDICTED: protein limb expression 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802123.1 True 2189 mRNA 0.44 6 18239308 18244773

Neighbor

gene id symbol gene type direction distance location
riok2 riok2 coding upstream 1309 18232728 ~ 18237999 (+)
slc14a2 slc14a1,LOC100693008,LOC103357096 coding upstream 99974 18133647 ~ 18139334 (+)
tent2 NA coding upstream 240927 17991866 ~ 17998381 (+)
LOC120560642 LOC103357080,LOC100694356,LOC102778564,LOC102192834 coding upstream 271821 17952081 ~ 17967487 (+)
LOC120560760 LOC104943387 coding upstream 289251 17945795 ~ 17950057 (+)
epg5 epg5 coding downstream 728 18245501 ~ 18268581 (+)
dnajb5 dnajb5,LOC102783367 coding downstream 25946 18270719 ~ 18280112 (+)
akr1a1a LOC103357443,LOC100534433 coding downstream 37597 18282370 ~ 18287282 (+)
LOC120560506 nefh,LOC102784691 coding downstream 62125 18306898 ~ 18311633 (+)
srrd srrd coding downstream 82191 18326964 ~ 18328537 (+)
G62406 NA non-coding upstream 111563 18127536 ~ 18127745 (+)
G62372 NA non-coding upstream 183159 18054799 ~ 18056149 (+)
G62344 NA non-coding upstream 298462 17939027 ~ 17940846 (+)
G62294 NA non-coding upstream 425495 17813589 ~ 17813813 (+)
G62280 NA non-coding upstream 481251 17757855 ~ 17758057 (+)
G62484 vcp,LOC102783844,LOC103357444,LOC107746855,LOC107393925 non-coding downstream 48487 18293260 ~ 18296903 (+)
G62502 thoc5 non-coding downstream 68438 18313211 ~ 18314777 (+)
G62508 NA non-coding downstream 75870 18320643 ~ 18321158 (+)
G62533 NA non-coding downstream 120507 18365280 ~ 18388485 (+)
G62540 NA non-coding downstream 212725 18457498 ~ 18459249 (+)
setbp1 setbp1,LOC102781608 other upstream 110239 18074768 ~ 18129069 (+)
thbs4a thbs4,LOC104953147,LOC106958346 other upstream 209922 18015405 ~ 18029386 (+)
cmya5 cmya5,LOC106958347,LOC104953151 other upstream 228278 17998686 ~ 18011030 (+)
tmem167a tmem167a,LOC103397084 other upstream 666603 17568013 ~ 17572705 (+)
LOC120560947 edil3 other upstream 824713 17285648 ~ 17414595 (+)
G62513 NA other downstream 85932 18330705 ~ 18331230 (+)
tbx5b tbx5,LOC103470367 other downstream 162575 18407348 ~ 18419590 (+)
tpcn1 tpcn1 other downstream 196574 18441347 ~ 18474731 (+)
acacb acacb other downstream 416384 18661157 ~ 18685463 (+)
mvk mvk,LOC102798305 other downstream 492745 18737518 ~ 18742399 (+)

Expression


Co-expression Network