prdm12b (LOC102306279,LOC102776562,LOC102208027,LOC101478941)



Basic Information


Item Value
gene id prdm12b
gene name LOC102306279,LOC102776562,LOC102208027,LOC101478941
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14878628 ~ 14886454 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039802199.1
TTGTATTAACACTTtaacacattacacattaacacattgtattgaaatagaaagaaaaaaacagcaagtgcagctttaattcCAGCAAGACTCTGACACTTGTttggattttttctttttaagttttGTTCACCTGaagggcttttttttccccctccggTCCCCTGACACCGGCTCTTGCTGCAGCTTCTGCCCGCCCCCGGCTCCTTCCCGTCCGGCCATGGGCTCCGTGTTGCCCGGCTCCTCGCTGGGCCTGAAGTCGGGCTTCAAGCCGCACCAGCCGCTCTCCCTGGCGGACATCATCACCTCGGACATCCTGCACAGCTTCCTGTACGGCCGCTGGAGGCACGTGCTGGGCGagcagcaccaccaccacctcccgcaccagcaTCACCTGCAGCACGAGGACCGCACCACCCCGAGCGCGAGCCCCAAGACCGCCTTCACCGCTGAGGTGCTCGCGCAGTCCTTCTCCGGAGaGGTCCAGAAGTTGTCCAGTCTGGTTTTACCCAGTGAGGTGATCATCGCTCAGAGTTCAGTCCCAGGAGAAGGTTTGGGTATTTTCTCTAAAACATGGAttaaagctggaacagagatGGGACCTTTCACCGGACGCCTCATCTCACCTGAACACATCGACCTGTACAAGAACAACAACCTCATGTGGGAGgtGTTTAACGAAGACGGGACGGTCAGGTATTTCATCGATGCGAGTCAGGAGGACCAGAGGAGCTGGATGACTTACATTAAGTGTGCGAGGAACGAGCAGGAGCAGAACCTGGAGGTGGTTCAGATCGGCAGCAGCATCTTCTACAAGGCTGTGGAGACAATCCCTCCGGATCAGGAGCTGCTGGTCTGGTACGGAAACTCCCACAACACCTTCCTGGGAATCCCAGGAATTcctggaggagaggaagaacagAGCAAGAAGACCAAAACCGatgaGTTCCACACCTGTGaaggctcctcctcctcctcctcttcttcctcctcttcctcctcctcctcctcctcttcctccagtcTGGGCCGCATGCGTTGCGTCATCTGCCACCGCGGCTTCAACTCCCGCAGCAACCTGCGCTCCCACATGCGTATCCACACGCTGGACAAACCGTTTGTCTGCCGCTTCTGCAACCGCCGGTTCAGCCAGTCATCCACGCTGAGAAACCATGTCCGGCTGCACACCGGTGAACGCCCGTACAAGTGCCACGTCTGCCAGTCGGCGTACTCGCAGCTGGCCGGCCTGAGGGCGCACCAGAAGAGTGCCAGGCACCGGCCCACAGGAGACGCCAGCGCTGCGGTGGGAAGCGTGGTGCTGCACGCTGCTCACGCAACTCACTCACCTCCTCCTCACCCACCACAGCTGACCACCATGCCTCATCCAGCATCACTGGTTCACCATGTACCCACCATGGTGCTGTGATAGggggtagacagacagacacacgcagcaaattacagacagacagataaacagaaacatcttttaacttaaaaaatatttgGACAAAATAAGACAGAAAGGTGTATCAcca

Function


NR:

description
PR domain zinc finger protein 12-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K24255 PRDM12; PR domain zinc finger protein 12

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039802199.1 True 1538 mRNA 0.56 6 14878628 14886454

Neighbor


gene id symbol gene type direction distance location
LOC120560087 LOC103371518 coding upstream 10973 14842071 ~ 14867655 (+)
kazald3 kazald1,LOC107097908 coding upstream 106476 14767716 ~ 14772152 (+)
grin1b grin1,LOC101175170,LOC102209996,LOC108248095,LOC107386166,LOC101469542,LOC102312845 coding upstream 125228 14677671 ~ 14753400 (+)
LOC120561189 LOC102300215,LOC108165969 coding upstream 212363 14646727 ~ 14666265 (+)
LOC120560602 LOC108248102,LOC106527805,LOC101064502,LOC101174676 coding upstream 236416 14626621 ~ 14642212 (+)
c5 NA coding downstream 5118 14891572 ~ 14924937 (+)
LOC120560530 NA coding downstream 93420 14979874 ~ 14981617 (+)
lrrc2 LOC102210414 coding downstream 356396 15242850 ~ 15252339 (+)
mak16 mak16 coding downstream 411946 15298400 ~ 15306100 (+)
LOC120561495 NA coding downstream 412088 15298542 ~ 15298643 (+)
G61513 NA non-coding upstream 201256 14676137 ~ 14677372 (+)
G61468 NA non-coding upstream 379194 14499180 ~ 14499434 (+)
LOC120560938 NA non-coding upstream 379571 14497781 ~ 14499057 (+)
LOC120561032 NA non-coding upstream 406439 14469197 ~ 14472189 (+)
LOC120561034 NA non-coding upstream 412903 14465003 ~ 14465725 (+)
G61539 NA non-coding downstream 139987 15026441 ~ 15027400 (+)
G61540 NA non-coding downstream 141151 15027605 ~ 15027818 (+)
G61730 LOC102301232,LOC102776762,LOC101476977 non-coding downstream 259646 15146100 ~ 15152551 (+)
G61756 NA non-coding downstream 337660 15224114 ~ 15224465 (+)
G61754 NA non-coding downstream 338093 15224547 ~ 15224969 (+)
surf4l surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other upstream 82685 14774513 ~ 14795943 (+)
G61514 surf4,LOC103397973,LOC102307728,LOC100699423,LOC101479701,LOC101465012 other upstream 84026 14699525 ~ 14794602 (+)
LOC120561401 NA other upstream 116079 14755450 ~ 14762549 (+)
LOC120560925 NA other upstream 444031 14431330 ~ 14434597 (+)
c6h12orf43 NA other upstream 486045 14389471 ~ 14392583 (+)
cntrl NA other downstream 41919 14928373 ~ 14979797 (+)
G61535 LOC103368073 other downstream 192420 15078874 ~ 15083448 (+)
nudt18 nudt18,LOC104957221 other downstream 332683 15219137 ~ 15224015 (+)
spinb spin1,LOC103373448,LOC108245887,LOC101477468,LOC100698355,LOC106527790 other downstream 363290 15249744 ~ 15352625 (+)
zgc:101664 NA other downstream 545254 15431708 ~ 15434935 (+)

Expression



Co-expression Network