LOC120560092 (LOC101464110,LOC102227132,LOC106956827,LOC106513657,LOC105931341,LOC103374419,LOC101075487)


Basic Information

Item Value
gene id LOC120560092
gene name LOC101464110,LOC102227132,LOC106956827,LOC106513657,LOC105931341,LOC103374419,LOC101075487
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25757088 ~ 25762906 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802203.1
CATTTCCAGACTCCCGCTCTGATTGGCTCTTATTTGAGGAAGCTCACGGGTTCTTTCAACTAATAAGCGCCTCCCCATCGCTCTAAAGGACATTATAATGCAAGGGACCTCCTTTTTTTAACCACAAACCGAATTTTCGTTCATTTAGACGATATATACTTTTTAAATTGCCCCAAAGTTGTGGGATTTTTTGGAGCGCATTTCACCCTGGAGCGGTACGCCATGCTCTCTCACGCCGACCTCCTGGATGCTCGGCTCGGTGAGTTATCATCACTAAACTCCGGCCCTAAACTCCAGTGGATGAAGGATGCTGCAGAGTTACTCGGACACCGAGAGGCTCTCAAGTGCCGGCTGGGTGGTGGGGTGCCAGACCAGGGGCATCCAGGAGACATGGCCCCTGGTTCTGACTCTGTAGAGGGAACCACTCTCCTGCCCGGAGAAGACATCGCCACTGTGGGATCCAACTCTGCCGGCATGCCGGTGAACGGGAAGGAGCaggagaagcagcagcagcaacaaccgCAGCAGAGCTCCAGTCAGTCCTCCAGCCAACAGAAACAGAAGCGGCACAGGACGCGCTTTACCCCGGCGCAGCTCAATGAGCTGGAGCGCAGTTTCGCCAAAACCCACTACCCCGACATCTTCATGAGGGAGGAACTGGCGCTGAGGATCGGCCTCACCGAGTCTAGAGTCCAGGTTTGGTTTCAGAACAGACGCGCTAAGtggaagaaaaggaagaagacCACCAATGTTTTCCGCTCCCCGGGGACGCTGCTCCCAACACCGGGCCTGCCACAGTTCTCTGCCGCGGCCGCCATGGAGAACAGCCTGTGCTCCTTCCACGCCAACGACTCTCGCTGGGCCACAGGGATGCCGGGGGTCTCCCAGCTGCAGCTCCCGTCGGCCCTGGGTCGCCAGCCGGGCATGCCACAGTCCCTGTCACAGTGCAGTCTGGGCCCCGGCCCACCACCAAACTCCATGGGTCTCTCCAACGGCCTTTCCTCCAACGGCTCCGGTCTGCAGTCCCACCTCTACCAGTCGCATTTCCCCGGAATGTCGGCCTCTCTATCCGGCCCCACGAACGTATCGGGCTCCCCGCAGCTGTGTAGTTCCCCGGACAGTGACATGTGGAGAGGGACAAGCATCGCGTCACTGCGGCGCAAAGCGCTGGAGCACACAGTGTCCATGAGTTTCACTTAGTGACTTTTCAAAAACACCCCCACCGCACTACTCTGCTCCTAACTCCCTCTCCCAGCCCCACCCTTCgactctttttctgtttttattcccGCTATTAGATCAAAACGAGAGAACGAGCGAGCTAATCAGGCCAGAAATGTGAGGAAATGGAGACTGTATGTGACTTCATCTAGACATAGCCtaatgacaaaaagaaaaggacAACACTGATGGACAAAcggaagaaaaaaatatcttGGGTTTGGGGTTATTTATCTTGTTACTTCTAAAGGATTTTATCAACTATTGATGATAAATACTATTGTAATGATCTCTAGACTATAGGCCCTAATTATTAAGAGCCAAACAATCGTCGTATTTACGTTTTCATTGAGTGTGTCTTCACGCACACATGTTATTGTGTTCAGGTGAAGTTGTTATGTCAAACGGTTATTTATAAGATGGGGTATACATTTTTGGTAACAGCCTACCACCAACACGCACCATACTGTAGGTGGGCCTATTGAACTGGCTTTCGGGCATGCACTGTGCATGTGGATTTAAACGCTTGGATAATTTAAGGAGAAAATGGTGCCCACTCAGATTGAAGAGTCGACATCAGTCTCGTATCTATGAGATGAGAGCATTAATctaaagaggagaaaaaacaaTGATCTTTCAGTAGGCCTACGCTGTTTTAGGATGTTTTGTGTAGATAAAACATTCTTGCTATGTACCCGCTGGTCTTTTTTGTGACATGTTTTAACTTATTGTATGTGCTATTACTTGACACATTTCTTAAATGTTTGATCTTACATCGAAATGCACCACATTGACGGGTTTGTACcaatttaaaatgaacaaacaaataaaagtaattttCAAGAATG
>XM_039802204.1
CATTTCCAGACTCCCGCTCTGATTGGCTCTTATTTGAGGAAGCTCACGGGTTCTTTCAACTAATAAGCGCCTCCCCATCGCTCTAAAGGACATTATAATGCAAGGGACCTCCTTTTTTTAACCACAAACCGAATTTTCGTTCATTTAGACGATATATACTTTTTAAATTGCCCCAAAGTTGTGGGATTTTTTGGAGCGCATTTCACCCTGGAGCGGTACGCCATGCTCTCTCACGCCGACCTCCTGGATGCTCGGCTCGGGATGAAGGATGCTGCAGAGTTACTCGGACACCGAGAGGCTCTCAAGTGCCGGCTGGGTGGTGGGGTGCCAGACCAGGGGCATCCAGGAGACATGGCCCCTGGTTCTGACTCTGTAGAGGGAACCACTCTCCTGCCCGGAGAAGACATCGCCACTGTGGGATCCAACTCTGCCGGCATGCCGGTGAACGGGAAGGAGCaggagaagcagcagcagcaacaaccgCAGCAGAGCTCCAGTCAGTCCTCCAGCCAACAGAAACAGAAGCGGCACAGGACGCGCTTTACCCCGGCGCAGCTCAATGAGCTGGAGCGCAGTTTCGCCAAAACCCACTACCCCGACATCTTCATGAGGGAGGAACTGGCGCTGAGGATCGGCCTCACCGAGTCTAGAGTCCAGGTTTGGTTTCAGAACAGACGCGCTAAGtggaagaaaaggaagaagacCACCAATGTTTTCCGCTCCCCGGGGACGCTGCTCCCAACACCGGGCCTGCCACAGTTCTCTGCCGCGGCCGCCATGGAGAACAGCCTGTGCTCCTTCCACGCCAACGACTCTCGCTGGGCCACAGGGATGCCGGGGGTCTCCCAGCTGCAGCTCCCGTCGGCCCTGGGTCGCCAGCCGGGCATGCCACAGTCCCTGTCACAGTGCAGTCTGGGCCCCGGCCCACCACCAAACTCCATGGGTCTCTCCAACGGCCTTTCCTCCAACGGCTCCGGTCTGCAGTCCCACCTCTACCAGTCGCATTTCCCCGGAATGTCGGCCTCTCTATCCGGCCCCACGAACGTATCGGGCTCCCCGCAGCTGTGTAGTTCCCCGGACAGTGACATGTGGAGAGGGACAAGCATCGCGTCACTGCGGCGCAAAGCGCTGGAGCACACAGTGTCCATGAGTTTCACTTAGTGACTTTTCAAAAACACCCCCACCGCACTACTCTGCTCCTAACTCCCTCTCCCAGCCCCACCCTTCgactctttttctgtttttattcccGCTATTAGATCAAAACGAGAGAACGAGCGAGCTAATCAGGCCAGAAATGTGAGGAAATGGAGACTGTATGTGACTTCATCTAGACATAGCCtaatgacaaaaagaaaaggacAACACTGATGGACAAAcggaagaaaaaaatatcttGGGTTTGGGGTTATTTATCTTGTTACTTCTAAAGGATTTTATCAACTATTGATGATAAATACTATTGTAATGATCTCTAGACTATAGGCCCTAATTATTAAGAGCCAAACAATCGTCGTATTTACGTTTTCATTGAGTGTGTCTTCACGCACACATGTTATTGTGTTCAGGTGAAGTTGTTATGTCAAACGGTTATTTATAAGATGGGGTATACATTTTTGGTAACAGCCTACCACCAACACGCACCATACTGTAGGTGGGCCTATTGAACTGGCTTTCGGGCATGCACTGTGCATGTGGATTTAAACGCTTGGATAATTTAAGGAGAAAATGGTGCCCACTCAGATTGAAGAGTCGACATCAGTCTCGTATCTATGAGATGAGAGCATTAATctaaagaggagaaaaaacaaTGATCTTTCAGTAGGCCTACGCTGTTTTAGGATGTTTTGTGTAGATAAAACATTCTTGCTATGTACCCGCTGGTCTTTTTTGTGACATGTTTTAACTTATTGTATGTGCTATTACTTGACACATTTCTTAAATGTTTGATCTTACATCGAAATGCACCACATTGACGGGTTTGTACcaatttaaaatgaacaaacaaataaaagtaattttCAAGAATG

Function

NR:

description
homeobox protein orthopedia B-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K24901 OTP; homeobox protein orthopedia

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802203.1 True 2069 mRNA 0.50 3 25757088 25762906
XM_039802204.1 False 2030 mRNA 0.50 3 25757088 25762906

Neighbor

gene id symbol gene type direction distance location
LOC120560772 pdxp,LOC102792570 coding upstream 97627 25655685 ~ 25659461 (+)
LOC120560771 ugt3a2,LOC108233592 coding upstream 103932 25647115 ~ 25653156 (+)
spef2 LOC104950669 coding upstream 110611 25626004 ~ 25646477 (+)
LOC120560598 NA coding upstream 135037 25601156 ~ 25622051 (+)
cdo1 cdo1,LOC102791980 coding upstream 183981 25567704 ~ 25573107 (+)
LOC120559963 LOC100704176,LOC102304428,LOC102794704,LOC102195896,LOC101487439 coding downstream 11472 25774378 ~ 25784037 (+)
LOC120560362 izumo1 coding downstream 176870 25939776 ~ 25949337 (+)
dusp2 dusp2,LOC106948589,LOC103145864,LOC102224120,LOC103470063 coding downstream 186548 25949454 ~ 25952579 (+)
adra2b LOC104943288,LOC102796455,LOC102308546,LOC103357149,LOC102212827,LOC100694621,LOC101484392,LOC105931407 coding downstream 195893 25958799 ~ 25964487 (+)
gpat2 LOC101483931,LOC102796756,LOC102305881,LOC102195621 coding downstream 218002 25980908 ~ 26161608 (+)
LOC120560927 NA non-coding upstream 9199 25713910 ~ 25747889 (+)
G64592 NA non-coding upstream 57304 25697063 ~ 25699784 (+)
G64578 NA non-coding upstream 93703 25663027 ~ 25663385 (+)
G64495 NA non-coding upstream 201307 25552939 ~ 25555781 (+)
LOC120560635 NA non-coding upstream 204824 25548023 ~ 25552264 (+)
G64607 NA non-coding downstream 25551 25788457 ~ 25795441 (+)
LOC120560032 NA non-coding downstream 76230 25839136 ~ 25843093 (+)
G64643 NA non-coding downstream 153038 25915944 ~ 25916892 (+)
G64657 NA non-coding downstream 154281 25917187 ~ 25917476 (+)
G64658 NA non-coding downstream 154859 25917765 ~ 25918093 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other upstream 60512 25684964 ~ 25696576 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other upstream 919640 24823718 ~ 24837448 (+)
prxl2c aaed1 other upstream 934022 24821314 ~ 24823066 (+)
G64108 NA other upstream 2063797 23692662 ~ 23693291 (+)
LOC120560905 clg12h9orf3,LOC103358904,LOC102294417,LOC101470200,LOC102214270 other upstream 2194803 23487967 ~ 23562285 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other downstream 151373 25914279 ~ 25915577 (+)
LOC120560359 NA other downstream 163181 25926087 ~ 25928596 (+)
nsd3 whsc1l1 other downstream 596214 26359120 ~ 26383843 (+)
G64814 cldn5,LOC103357131 other downstream 649963 26412869 ~ 26414597 (+)
c6h22orf39 clg12h22orf39 other downstream 731378 26494284 ~ 26496987 (+)

Expression


Co-expression Network