si:dkey-178e17.3 (sbspon,LOC103359527)


Basic Information

Item Value
gene id si:dkey-178e17.3
gene name sbspon,LOC103359527
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26666733 ~ 26679998 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802270.1
GGGGCGGTGTCCAACATACGAATAGAGGAGAGCTGCTGTGCACACAGGCTCCACTTTTATGCATCAGTTGTTCGTGTTAAGGTGTCAATGCCGAACTTACCTTGGATTTGCATTTTATATGAAAAAACACCACCATTGTCTTTATAACAAAACTCAGTTTTAGGCATCATCCAGAGTGAAGAAGCATACACCAGCGCAGTGTGCGTGTAAGTGTGGACCCAGAAAAGTCTCCGTCATGGGAGCGCATAGATGGAGCTCAGCGCGTCTTGGGTTTGTCGTTTGTGGATATTTCGCGTTTTTCTGCGGGGAAATTGTTTCACGGGCTGAAGCGGgctgcagggagagagagagcccaAACTGCTGCAGCGGCCGGAACAACGAATGTTTTGAGTACAGCAAGAGAAAAACAGTGTGCTACTGTGACACCTACTGTCAGAAAACCGGAGACTGCTGCGAGGACTACCAGCGTGTGTGTCAAATATCTGCAGCCATTGACTGTGTGGTGGGATCATGGGGTCCCTGGTCATCATGCACATCTCCATGTGGAGTTGGCAGCACAGAGAGGAGTCGCCAAGTGTCTATTCCCCCTAGAAATGGCGGCACGCCCTGTCCTGACCTCAAACAGCGCCGGGGATGCTTTGGAAACAACGCCATATGCAGCACTGCGAAAGAGGTGGCAAAGATCCTGCCTGATTCTTTCAAGAGGAACTTCAAGGACCCTTGGAGGCGACCACACATGCTGATGAAGGAGGAGAAGGCCAGTTACTGTGTCTATTTGCGGGTGAAACAGGCCAGTGCAGCATGTAAACTTAAACTGTGGAGTGCTCAGCTGGTGAAAGAGAGGCTGGTCTGTGCAGAGTGTCAGAGTGATGCCATGTCAAAGTCAGACCGCTGTGGAGGAGACGGCCTAGAAAGCATCAGAACGTTCTGGGCAGCAGCTTCAGTCCCGGGCTGTCATGGTTCCTGGGTGAAAGAGTCGTCCTCCTTGGGCTGCCGCTGTCCTGCCTACTCTGTGCTCTTCGTGTGAGCTGACACGCAAACCCAAGACATCCGTATGCAGGGACAAGATTTCCCTCAGCACCTCCTGCTAACTGTGGAGAGCCCTGCCAGCCAAGCCAGACCCCTGTGATCCAGACTACTGGATGGGTAACTCAAGGAGATCAGCAGCATCCTGCCACTTTTTCCTATCACCTCATACTCTGTACTGTATACACTATTAATAAGCACACAGAAATTCTCGCATTTAACTTCAAATCTTACAGCCACGTTATGTACTTATTCTCCCCCAAAGCACAGCAACATCTATATGCCTTTTTACCTCCGAATCTTTGCTATCTACCTCCATCAATGCAAGTGCATTTGTTAATGcataatgtataaatatataaatatattattttgctTTATACATTTTCTACTTTTGATTGTTTATATGTTATGTATATGTGTCTATATAGCTACACTTATGTGTATTCAACAAATGCCAAACAGCAGTTGCTGCACCCAGTGTAAGCCCTAGCCAGGGTCCCTAAATCACCTGCAGGTTGGAGAAGCTGAAAACTGGTTCATCCAAATTGTATTCATTGCTAGAATCCTTGAGTCAATATATCTGTGTTTTACAGTTTTGTCCCTGCTATTATTTcttttcaacaaaaacatttataccAGCAAGTCAAGTTGAATATCAGGTATTGATTCTCAGGTGCTGAgatttgtgtctttgtctcccATCAAGCTTCCTCTTTCATGTCTACCACCTCTGATGGTCAGTGACTGATGTTTTTAGGAGTTTAGAGTGACTCATAGATGAAATCAGTCCCATCTGTTTAGACCTAATATTGTTGGAGAGGAaaaagagccattaaaaagtatTGTACTGTggttctctctgtcctctgtgtccAAGACTGAAAACAGTTGCTTCATAACAATGTTTTCTCTTACTCCCTGCCCTGCTCAGAAATCCTATTACCGTCACAAGGGAGTTTTTATTAGCAAAGTGTCATCTAATATATCTATCGCATACAGCCATGTTACTCCCATTTTATTCATTAACAGACTCTCCTCCCAGCACTCCCCACATATCCTTGATCtgcacttctttttttctctgcccTCTACTGACTTGGTGTATTCTTAAAAACCAGGAGTCAGTTAACTGGCTCAGTACGCCTTCCTGTATCTCTTGTACTTCTGCTTTAAGAAGACAAGTGTATTCCCAGTAAAGGGCTTTTCTCTCTGGAAAGCTGTGACTTTCTCTCTcccatgtctgtgtctgtgtgtttatttattataaaacaaATGATGATGTTATTAGTGCAGCACAGCATACTCTGTACACTGTCCATTAGTGAAAATAAACAACTATACTGACATTT
>XM_039802271.1
GGGGCGGTGTCCAACATACGAATAGAGGAGAGCTGCTGTGCACACAGGCTCCACTTTTATGCATCAGTTGTTCGTGTTAAGGTGTCAATGCCGAACTTACCTTGGATTTGCATTTTATATGAAAAAACACCACCATTGTCTTTATAACAAAACTCAGTTTTAGGCATCATCCAGAGTGAAGAAGCATACACCAGCGCAGTGTGCGTGTAAGTGTGGACCCAGAAAAGTCTCCGTCATGGGAGCGCATAGATGGAGCTCAGCGCGTCTTGGGTTTGTCGTTTGTGGATATTTCGCGTTTTTCTGCGGGGAAATTGTTTCACGGGCTGAAGCGGgctgcagggagagagagagcccaAACTGCTGCAGCGGCCGGAACAACGAATGTTTTGAGTACAGCAAGAGAAAAACAGTGTGCTACTGTGACACCTACTGTCAGAAAACCGGAGACTGCTGCGAGGACTACCAGCGTGTGTGTCAAATATCTGCCATTGACTGTGTGGTGGGATCATGGGGTCCCTGGTCATCATGCACATCTCCATGTGGAGTTGGCAGCACAGAGAGGAGTCGCCAAGTGTCTATTCCCCCTAGAAATGGCGGCACGCCCTGTCCTGACCTCAAACAGCGCCGGGGATGCTTTGGAAACAACGCCATATGCAGCACTGCGAAAGAGGTGGCAAAGATCCTGCCTGATTCTTTCAAGAGGAACTTCAAGGACCCTTGGAGGCGACCACACATGCTGATGAAGGAGGAGAAGGCCAGTTACTGTGTCTATTTGCGGGTGAAACAGGCCAGTGCAGCATGTAAACTTAAACTGTGGAGTGCTCAGCTGGTGAAAGAGAGGCTGGTCTGTGCAGAGTGTCAGAGTGATGCCATGTCAAAGTCAGACCGCTGTGGAGGAGACGGCCTAGAAAGCATCAGAACGTTCTGGGCAGCAGCTTCAGTCCCGGGCTGTCATGGTTCCTGGGTGAAAGAGTCGTCCTCCTTGGGCTGCCGCTGTCCTGCCTACTCTGTGCTCTTCGTGTGAGCTGACACGCAAACCCAAGACATCCGTATGCAGGGACAAGATTTCCCTCAGCACCTCCTGCTAACTGTGGAGAGCCCTGCCAGCCAAGCCAGACCCCTGTGATCCAGACTACTGGATGGGTAACTCAAGGAGATCAGCAGCATCCTGCCACTTTTTCCTATCACCTCATACTCTGTACTGTATACACTATTAATAAGCACACAGAAATTCTCGCATTTAACTTCAAATCTTACAGCCACGTTATGTACTTATTCTCCCCCAAAGCACAGCAACATCTATATGCCTTTTTACCTCCGAATCTTTGCTATCTACCTCCATCAATGCAAGTGCATTTGTTAATGcataatgtataaatatataaatatattattttgctTTATACATTTTCTACTTTTGATTGTTTATATGTTATGTATATGTGTCTATATAGCTACACTTATGTGTATTCAACAAATGCCAAACAGCAGTTGCTGCACCCAGTGTAAGCCCTAGCCAGGGTCCCTAAATCACCTGCAGGTTGGAGAAGCTGAAAACTGGTTCATCCAAATTGTATTCATTGCTAGAATCCTTGAGTCAATATATCTGTGTTTTACAGTTTTGTCCCTGCTATTATTTcttttcaacaaaaacatttataccAGCAAGTCAAGTTGAATATCAGGTATTGATTCTCAGGTGCTGAgatttgtgtctttgtctcccATCAAGCTTCCTCTTTCATGTCTACCACCTCTGATGGTCAGTGACTGATGTTTTTAGGAGTTTAGAGTGACTCATAGATGAAATCAGTCCCATCTGTTTAGACCTAATATTGTTGGAGAGGAaaaagagccattaaaaagtatTGTACTGTggttctctctgtcctctgtgtccAAGACTGAAAACAGTTGCTTCATAACAATGTTTTCTCTTACTCCCTGCCCTGCTCAGAAATCCTATTACCGTCACAAGGGAGTTTTTATTAGCAAAGTGTCATCTAATATATCTATCGCATACAGCCATGTTACTCCCATTTTATTCATTAACAGACTCTCCTCCCAGCACTCCCCACATATCCTTGATCtgcacttctttttttctctgcccTCTACTGACTTGGTGTATTCTTAAAAACCAGGAGTCAGTTAACTGGCTCAGTACGCCTTCCTGTATCTCTTGTACTTCTGCTTTAAGAAGACAAGTGTATTCCCAGTAAAGGGCTTTTCTCTCTGGAAAGCTGTGACTTTCTCTCTcccatgtctgtgtctgtgtgtttatttattataaaacaaATGATGATGTTATTAGTGCAGCACAGCATACTCTGTACACTGTCCATTAGTGAAAATAAACAACTATACTGACATTT

Function

symbol description
sbspon Predicted to be an extracellular matrix structural constituent. Colocalizes with collagen-containing extracellular matrix.

NR:

description
PREDICTED: somatomedin-B and thrombospondin type-1 domain-containing protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802270.1 True 2378 mRNA 0.45 5 26666733 26679998
XM_039802271.1 False 2375 mRNA 0.45 5 26666733 26679998

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-117b11.1 NA coding upstream 59099 26597995 ~ 26607634 (+)
plat plat coding upstream 69420 26585780 ~ 26597313 (+)
vdac3 vdac3 coding upstream 113002 26543026 ~ 26553731 (+)
rpl6 rpl6 coding upstream 155488 26506645 ~ 26511245 (+)
acaa2 acaa2 coding upstream 161729 26499573 ~ 26505004 (+)
pi4kab pi4ka coding downstream 7334 26687332 ~ 26719116 (+)
LOC120561052 LOC104921679,LOC106580276,LOC105940836,LOC102302829,LOC106700476 coding downstream 110200 26790198 ~ 26791064 (+)
LOC120561053 NA coding downstream 113693 26793691 ~ 26794572 (+)
LOC120561461 LOC106926604,LOC102220481,LOC108166557,LOC108233617 coding downstream 117825 26797823 ~ 26799241 (+)
utp15 utp15 coding downstream 150053 26830051 ~ 26837172 (+)
G64930 NA non-coding upstream 3207 26662767 ~ 26663526 (+)
G64893 NA non-coding upstream 85920 26572244 ~ 26580813 (+)
G64841 enkd1,LOC102781555 non-coding upstream 126097 26540415 ~ 26540636 (+)
G64840 NA non-coding upstream 126510 26538658 ~ 26540223 (+)
G64839 NA non-coding upstream 128192 26538268 ~ 26538541 (+)
G64944 NA non-coding downstream 2520 26682518 ~ 26684255 (+)
G64949 btf3,LOC103470010,LOC107089645,LOC106958054,LOC106926613 non-coding downstream 81393 26761391 ~ 26829185 (+)
G64967 ykt6 non-coding downstream 213703 26893701 ~ 26896143 (+)
LOC120560738 NA non-coding downstream 217904 26897902 ~ 26899558 (+)
G65083 NA non-coding downstream 519951 27199949 ~ 27200190 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other upstream 4838 26644661 ~ 26661895 (+)
cltcl1 LOC100691387,LOC103359525 other upstream 22566 26614237 ~ 26644167 (+)
c6h22orf39 clg12h22orf39 other upstream 169746 26494284 ~ 26496987 (+)
G64814 cldn5,LOC103357131 other upstream 252136 26412869 ~ 26414597 (+)
nsd3 whsc1l1 other upstream 282890 26359120 ~ 26383843 (+)
ndufs4 ndufs4 other downstream 332212 27012210 ~ 27039599 (+)
G65084 lipg other downstream 525236 27205234 ~ 27370959 (+)
mboat4 NA other downstream 2165628 28845626 ~ 28849471 (+)
ubac1 ubac1 other downstream 2664582 29344580 ~ 29351756 (+)
fbxo21 fbxo21 other downstream 3506850 30186848 ~ 30212108 (+)

Expression


Co-expression Network