LOC120560109


Basic Information

Item Value
gene id LOC120560109
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 31485063 ~ 31489526 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802281.1
AAGACGAAGGGCTCTCACCCCTCCATGCTTGCTGCCACCTTGGAGTAGAAGGATGCTTGTCTTCAGAGGAAGAGCTCTCACCCTTTCACCTGCGCTCCTTCACGATGGTAGAAGGGTTGGTGTCTCCACTAGACGAAGGTCTCTCACCCCTTCGTCCGTGCTCCCTCAAGATGGTGGGAGGGTTGAGGTCTTCAGGAGAGGAAGGTCTCTAACTCCTTCGTTTGGACTTCTTCGAAGAAGAGTCCATATCTCCTGAAGACCGAGGTCTTGCAAAGAATTTTAGTCCAAAAATGGATCTAAACTTTTTCTCAATTATTTCTCGTTTGTATACTGCCGTTTTGAAACTgcaagtacaaacacacacacacacagcaattacttcagaagatgaagaggaagggCTCTCAGCCCTTTTTTGTTGCTGCTTCCTCGTGGTAGAAGGCTGGTCATCTTCAGAAGATGAAGACGAAGGGTCTTCACCTCTCCATGCTTGCTGCCGCCTTGGAGTAGAAGGATGCTTGTCttcagaggatgaagaggaagggcCCCTTCGTACTTGCTGCCTGGTGGTAGAGGGCTGGTTTTCTGCACAAGACAAAGGGCTCTCACCCCTTTGCCTGTGCTCCTTCATGTTGGTAGAAGGGTTGGTGCCCACGATGAACAAAGAGCTCACATCCCTTCATTCTTGTTGCCTGGTGGTAGAAGGCTGGTTGTCTTCAGAAGATGAAGACGAAGGGCTCTCACCCCTCCATACTGGCTGCCGCCGCCTTGGAGTAGAAGGCTGCTTGTCttcagaggatgaagaggaagggcTCTCACCCCTCCGTACTTGCTGCCTGGTACAAGGGAACACCATGATTAAAGTGTGGCGGCAGCTACATGAAAATCATAATGAGGAGTACCTTCATCGTAAGGATCTGTACACCACACTCTTCGTGACTGTATCAGAAGCCGGAGGGATTGTCTCTGTATTTGGACACACAGTCCAGGCTCCACCTCCTCAGAGAGCGCTTCCATCCCCGCTGCTCCTGCACCACCCCGTCCTGCTGGCAGAGGCCAACAATGTGCAGGATTACCGGAACCAGATCCTCTCCACTTTTGGCACTGTGCTGAAAATGGATTCCACCAAGAAAGTGGTAACGAAGCTGTCTGGCGGGGGCAAAGGCTCATCTGAGCGGTTCACCAGCATCGTAAACGAGCAGTCCCAGATAGTTTTGTTTGTGCTAACCTGTGAGGAGTCCACCGAGAAGCTGAAACCAATGTGCCGTGGAGTCATGGACAGGTTCCGGCTGGCCAGTCAAGCTGTGCCCAAAAACCTATTTGTGGACCATGGGTGTTGCCCTGCACAGGGACCAACAGGGACAGAGACTTTCTTCCAGCCTTGGGGGGACAGTGGTGTGGTTGTGCGTCGGGACATCTTCCGCTGGATGCACCGGTTTGACGCAGCAAAAGGCACACTGCAAGTACGCTGTGTTCAAGTCGACTCTAGCTGGGGCTGTGATGGCCTACAACCGCACCGACCTGGAGCTGCTCATCAAGGCCATCAAAGCCAAGAACCCGGCAATGCTGAACTCTGTCCCAGACAACATTTCAAGGGGCCACCTTAAACACCACGTGCGTAGGGTCAGACCTCGCCATCGAGAAGGTAAGAGGTCCCGCTGGGCTGGACAAGAGTGGAGTGAGCCTCTTCAAAACAACTGATGATGAGATGTGGGCAAGCCAGCAGCGACACCTGGAGTGCATCCAGGATCCTCAAGGCATGATCATGTACAGGCTGGCGCGTACCGCAGACATCAACAATGTGGACGTGCCCTTCTACAAATGTCTGCGTGGAAGCAACAGCCTGGAAGGATTCCACAAAACTCTTCCACACATGATTCCAGCACGGCCCTATCAGGTTTACCTGATAAGTGGCGTTGCACGGTGGAACTCGGACAGGAGCTCGGGTGCCGTGTTTGGAGGCAGAGGACGCCATTGATCGACCGCCTCAACACCCGCTGTCAGCAGCTATTCAGAGAGACTGTGGAGCCCCTGCTGATGTCCCTTCCAACGAGCTGCTGGGGCTAGAGTACCTGTTCGGCCAGAGCGCGGGTGAATCTGGACCCTTTTCCCTTAAGGACATTGTAAATGATGGACCTGGtccagaggaggaggtggttcAGCCCGGGCAGCCCCATCCAGAGTCCGATGAGGCGTACCAGAGCGACGTGGAGGCACATGATGATGCGCTGGATGTCATCATGCCCCACATAACGCTCACCAGCGACGAAACCTCCACTGTTCACCCTCCAGCCTTTgaGGATGCCTGCAGTCCAAACCCTTTGCCCGGCTTTTCAAAGCTGGAACGGTTCTGCTCTGTGCTGGTGGAGATTGGCCTGACGGAGGACAAGCTGTCACTAAGCTCAGAGCAGAGGAAGGACGTCCTGGACGCCTGGAGCAAAGTGGACGAGCATGACAAACAGCCACAGCAGTTTAACCAGCTGTACAGAACCCACTGGGGCAACACCCTGTACTGCCCAACCAAAAGAGACGACCTTGTTGATGCTGCTTTAGTACACCTATGGACATATGGCAATAGAAATATAATAAGAACTTCCATGATCCTTAATACtatcaataaacaaacaaatattaatACAACCCTCAAATGAAAACTATAGTTGAATCTAACTTCATCATCTTATACTTTTAGTGGGGTGAGTGACACCACCCATCACAATACTTGAAAGAAGTTAATGTGATATACAAAAATGGCCTTTGTGCTCCCTGTACATAGTCATGCatgacatacaaacacaataacATCAAAGGATAATGGCTTTATTCTGGATTCATTGAGTAAGTGTGCTTAATGAGTTGTATAATTGTTGAATATGTCATATTTGCAGTTGTTTGTACTGTTTATTTCAACATCAGTAGTCTAGTGCTCACAAAATAGTTTGACCACTTGGGAGAGACCCTGAATTCATTGCCATCTTCTGATATTTACATATTTGTCCACACACCTGCAAAATGTCACCCATTCACACTGAGGGAATTTGTACTTTGGTACAGCTGACCCCCACTGGCAgtgctggaatgtaactaagcgCATTTCCCTATATAAAGATATATACTTCATCCATCATGGAATTACAGTGTATTTGTTGACCTTTTAACCCAGCTTCACGTCTTGTTTGTAGCTTGTAGCCATATAGCTCCAGCTTTCAGGCAATAAGTTTGGTGTCTTTGTGACGTTAGCACTTCTAGAAGTTTAGTAATCTGGCCTGGAAGACAGTGACTTTTTGGAGACTTTTCAAAGACTTTGCACGAGTATATCCAGACTTTTTGGGGTATTTAGCTTATGACATACAAATATTTTCTGTTGACTTCTTTCATTCTCAGTGTGTAATCTAAAGGGAACTGTActaaataatgaatgaaaacagtCAAAGCTGTAATAAGCTAACGCTTAACTTTTTCGGTCAGAATAAACTTGCTTTGGTTTGTCA
>XM_039802283.1
AAGACGAAGGGCTCTCACCCCTCCATGCTTGCTGCCACCTTGGAGTAGAAGGATGCTTGTCTTCAGAGGAAGAGCTCTCACCCTTTCACCTGCGCTCCTTCACGATGGTAGAAGGGTTGGTGTCTCCACTAGACGAAGGTCTCTCACCCCTTCGTCCGTGCTCCCTCAAGATGGTGGGAGGGTTGAGGTCTTCAGGAGAGGAAGGTCTCTAACTCCTTCGTTTGGACTTCTTCGAAGAAGAGTCCATATCTCCTGAAGACCGAGGTCTTGCAAAGAATTTTAGTCCAAAAATGGATCTAAACTTTTTCTCAATTATTTCTCGTTTGTATACTGCCGTTTTGAAACTgcaagtacaaacacacacacacacagcaattacttcagaagatgaagaggaagggCTCTCAGCCCTTTTTTGTTGCTGCTTCCTCGTGGTAGAAGGCTGGTCATCTTCAGAAGATGAAGACGAAGGGTCTTCACCTCTCCATGCTTGCTGCCGCCTTGGAGTAGAAGGATGCTTGTCttcagaggatgaagaggaagggcCCCTTCGTACTTGCTGCCTGGTGGTAGAGGGCTGGTTTTCTGCACAAGACAAAGGGCTCTCACCCCTTTGCCTGTGCTCCTTCATGTTGGTAGAAGGGTTGGTGCCCACGATGAACAAAGAGCTCACATCCCTTCATTCTTGTTGCCTGGTGGTAGAAGGCTGGTTGTCTTCAGAAGATGAAGACGAAGGGCTCTCACCCCTCCATACTGGCTGCCGCCGCCTTGGAGTAGAAGGCTGCTTGTCttcagaggatgaagaggaagggcTCTCACCCCTCCGTACTTGCTGCCTGGTACAAGGGAACACCATGATTAAAGTGTGGCGGCAGCTACATGAAAATCATAATGAGGAGTACCTTCATCGTAAGGATCTGTACACCACACTCTTCGTGACTGTATCAGAAGCCGGAGGGATTGTCTCTGTATTTGGACACACAGTCCAGGCTCCACCTCCTCAGAGAGCGCTTCCATCCCCGCTGCTCCTGCACCACCCCGTCCTGCTGGCAGAGGCCAACAATGTGCAGGATTACCGGAACCAGATCCTCTCCACTTTTGGCACTGTGCTGAAAATGGATTCCACCAAGAAAGTGGTAACGAAGCTGTCTGGCGGGGGCAAAGGCTCATCTGAGCGGTTCACCAGCATCGTAAACGAGCAGTCCCAGATAGTTTTGTTTGTGCTAACCTGTGAGGAGTCCACCGAGAAGCTGAAACCAATGTGCCGTGGAGTCATGGACAGGTTCCGGCTGGCCAGTCAAGCTGTGCCCAAAAACCTATTTGTGGACCATGGGTGTTGCCCTGCACAGGGACCAACAGGGACAGAGACTTTCTTCCAGCCTTGGGGGGACAGTGGTGTGGTTGTGCGTCGGGACATCTTCCGCTGGATGCACCGGTTTGACGCAGCAAAAGGCACACTGCAAGTACGCTGTGTTCAAGTCGACTCTAGCTGGGGCTGTGATGGCCTACAACCGCACCGACCTGGAGCTGCTCATCAAGGCCATCAAAGCCAAGAACCCGGCAATGCTGAACTCTGTCCCAGACAACATTTCAAGGGGCCACCTTAAACACCACGTGCGTAGGGTCAGACCTCGCCATCGAGAAGATGATGAGATGTGGGCAAGCCAGCAGCGACACCTGGAGTGCATCCAGGATCCTCAAGGCATGATCATGTACAGGCTGGCGCGTACCGCAGACATCAACAATGTGGACGTGCCCTTCTACAAATGTCTGCGTGGAAGCAACAGCCTGGAAGGATTCCACAAAACTCTTCCACACATGATTCCAGCACGGCCCTATCAGGTTTACCTGATAAGTGGCGTTGCACGGTGGAACTCGGACAGGAGCTCGGGTGCCGTGTTTGGAGGCAGAGGACGCCATTGATCGACCGCCTCAACACCCGCTGTCAGCAGCTATTCAGAGAGACTGTGGAGCCCCTGCTGATGTCCCTTCCAACGAGCTGCTGGGGCTAGAGTACCTGTTCGGCCAGAGCGCGGGTGAATCTGGACCCTTTTCCCTTAAGGACATTGTAAATGATGGACCTGGtccagaggaggaggtggttcAGCCCGGGCAGCCCCATCCAGAGTCCGATGAGGCGTACCAGAGCGACGTGGAGGCACATGATGATGCGCTGGATGTCATCATGCCCCACATAACGCTCACCAGCGACGAAACCTCCACTGTTCACCCTCCAGCCTTTgaGGATGCCTGCAGTCCAAACCCTTTGCCCGGCTTTTCAAAGCTGGAACGGTTCTGCTCTGTGCTGGTGGAGATTGGCCTGACGGAGGACAAGCTGTCACTAAGCTCAGAGCAGAGGAAGGACGTCCTGGACGCCTGGAGCAAAGTGGACGAGCATGACAAACAGCCACAGCAGTTTAACCAGCTGTACAGAACCCACTGGGGCAACACCCTGTACTGCCCAACCAAAAGAGACGACCTTGTTGATGCTGCTTTAGTACACCTATGGACATATGGCAATAGAAATATAATAAGAACTTCCATGATCCTTAATACtatcaataaacaaacaaatattaatACAACCCTCAAATGAAAACTATAGTTGAATCTAACTTCATCATCTTATACTTTTAGTGGGGTGAGTGACACCACCCATCACAATACTTGAAAGAAGTTAATGTGATATACAAAAATGGCCTTTGTGCTCCCTGTACATAGTCATGCatgacatacaaacacaataacATCAAAGGATAATGGCTTTATTCTGGATTCATTGAGTAAGTGTGCTTAATGAGTTGTATAATTGTTGAATATGTCATATTTGCAGTTGTTTGTACTGTTTATTTCAACATCAGTAGTCTAGTGCTCACAAAATAGTTTGACCACTTGGGAGAGACCCTGAATTCATTGCCATCTTCTGATATTTACATATTTGTCCACACACCTGCAAAATGTCACCCATTCACACTGAGGGAATTTGTACTTTGGTACAGCTGACCCCCACTGGCAgtgctggaatgtaactaagcgCATTTCCCTATATAAAGATATATACTTCATCCATCATGGAATTACAGTGTATTTGTTGACCTTTTAACCCAGCTTCACGTCTTGTTTGTAGCTTGTAGCCATATAGCTCCAGCTTTCAGGCAATAAGTTTGGTGTCTTTGTGACGTTAGCACTTCTAGAAGTTTAGTAATCTGGCCTGGAAGACAGTGACTTTTTGGAGACTTTTCAAAGACTTTGCACGAGTATATCCAGACTTTTTGGGGTATTTAGCTTATGACATACAAATATTTTCTGTTGACTTCTTTCATTCTCAGTGTGTAATCTAAAGGGAACTGTActaaataatgaatgaaaacagtCAAAGCTGTAATAAGCTAACGCTTAACTTTTTCGGTCAGAATAAACTTGCTTTGGTTTGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802281.1 True 3491 mRNA 0.49 5 31485063 31489526
XM_039802283.1 False 3436 mRNA 0.49 5 31485063 31489526

Neighbor

gene id symbol gene type direction distance location
LOC120561065 NA coding upstream 23619 31456500 ~ 31461444 (+)
LOC120560681 LOC108242800,LOC106510782,LOC101474983 coding upstream 168641 31315299 ~ 31316422 (+)
hs3st1l2 LOC102790965,LOC100694141,LOC103362344,LOC102206456,LOC102298111 coding upstream 184618 31273898 ~ 31300445 (+)
LOC120559964 NA coding upstream 244023 31237268 ~ 31241040 (+)
LOC120561480 NA coding upstream 356303 31126860 ~ 31128760 (+)
LOC120560726 LOC103353430,LOC108242814,LOC103397877 coding downstream 23782 31513308 ~ 31565163 (+)
dapk1 dapk1 coding downstream 80516 31570042 ~ 31660267 (+)
ctsla LOC104932682 coding downstream 180999 31670525 ~ 31675115 (+)
kank1a kank1 coding downstream 210000 31699526 ~ 31757504 (+)
dmrt1 NA coding downstream 280766 31770292 ~ 31802453 (+)
LOC120560111 LOC108434293 non-coding upstream 62 31478501 ~ 31485001 (+)
G66107 NA non-coding upstream 66803 31409955 ~ 31418260 (+)
G66092 LOC103362337,LOC101472255,LOC102204493,LOC102311726,LOC100707713 non-coding upstream 75907 31351198 ~ 31409156 (+)
G66069 NA non-coding upstream 166589 31317576 ~ 31318474 (+)
G66071 NA non-coding upstream 173616 31310943 ~ 31311447 (+)
LOC120561307 NA non-coding downstream 269662 31759188 ~ 31763773 (+)
G66253 NA non-coding downstream 759475 32249001 ~ 32249240 (+)
G66255 NA non-coding downstream 801246 32290772 ~ 32291019 (+)
G66294 NA non-coding downstream 981659 32471185 ~ 32474048 (+)
G66295 NA non-coding downstream 984961 32474487 ~ 32475080 (+)
LOC120561064 NA other upstream 591783 30857580 ~ 30893280 (+)
G65899 taok3 other upstream 906904 30574086 ~ 30578159 (+)
LOC120560820 NA other upstream 1233544 30246887 ~ 30251519 (+)
fbxo21 fbxo21 other upstream 1272955 30186848 ~ 30212108 (+)
ubac1 ubac1 other upstream 2133307 29344580 ~ 29351756 (+)
dmrt3a dmrt3 other downstream 318269 31807795 ~ 31811553 (+)
adamts3 adamts3,LOC100699019,LOC101479253,LOC102313231 other downstream 543050 32032576 ~ 32209534 (+)
G66231 NA other downstream 636767 32126293 ~ 32136966 (+)
G66256 slc4a5,LOC102211952,LOC101484802 other downstream 832981 32322507 ~ 32329990 (+)
G66263 LOC106536102 other downstream 875334 32364860 ~ 32369984 (+)

Expression


Co-expression Network