rhbdd3 (rhbdd3)


Basic Information

Item Value
gene id rhbdd3
gene name rhbdd3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19357954 ~ 19362474 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802288.1
CCTCTCAAacggagaaaagaaaaaaaggaatttgGTAAAACCGAAATCAGACTGTTATTTGGGTTTggttttctcccttttctcgtTTTTGAAATCAGAAACCAAAAACGGAAATACGGGTCAGGGTATGTTTTCCATTTATTCGTGTTTGAATTGAAACGAaaatcgaaaaaaaacaaaaaacactctATTTCCGTTTGTTCGTTTCGTTGTTCAAACGATGAAACAAATTATGAAAGCGTACACGGACCAAGAAGAAGTCATATGATTCAGTTTTCACAAGACAAGCCGAAAGGATTATTGTACCAATGTGAAGTTGTTCATGCTAACTGTGACAGTGGGTCCAGTAGGTGGCGGTACGATTATGTCAATGGGTACGACGCATTTACTCTAGTTTGCCAACTGTCGTAACGTAGTGCGGAAGTGGTTATCCATCCATAGCGCTATCATCTTTTATCAATGTCTTTTATATATATCAATGGATgtcatagatatatctatgtcATAGGCAGTATATAGAGCGCtatgaatgttttcattttcgTATTTAAATACACGTATAAGTCGCGTATTGAGGAAATAGTTATTTTATAATAGCAGTTACACTCGCAGGCTCGCTGTACGAGTACAATCGGTGGCAGAGAGGATTTGACAAGATAAGTTGTGTAGTATTTTTGCAGCCAGTATACTAACgttactgttgtggatttatatTTATGCCGTAGACTCCAGCTCCCACACTCAATATTGTGAGAAATAAATAGGGTTATATATCTGTACCCCTTTCATTTTTGCAAGACTTTGTGCCCGTTATGATTACAAACAGATGCTTCTTTACCAGAATTATGGCACAAAAGCACAAGTGAGTGGAGAAACTACAGCTAATGCTAAATAATGCTTCGTATATCGTCAGTATGGTTTTGGTTTGGATCAGATCGCCCTGGATTCTGTCTGGGGACATCTTTATTGATAACACTCATGCTGCTGATGTATGCTGTTGGCATCCAGGCAAGTCTCAGCTTAGGTCCAGGTGGAGACTTCCCAAGGGTCAGAGATGTGTTCCTGTATGCTTTCAGTCATGATGAGCTGCCCTCTCTGCTGGTTAGTGTTGCTTTCCTGCTGTTGGTTGGGCCGTGTCAGGAGCGTCGCTGGGGAACTGTCGCCTTCCTCGCCCTCTCCATCCTGACAATGACCATATTACCTCTTCTTTACACCCTGGTCCTCTTTGTCGGTGGGGGTGAGGCGAGTCGGATCTGTGGTTACTCTGCAATCCAGCTTGCCCTGTTTGCAGCGCATTGTCGTCAAGTGGCACAGAGGAGGCTGCTGAGGTGTTTGCCAGTCTGGTTTCTCCCCTGGCTTCTTCTGCTGAtgggtctgctgctgctgcccggGACCCCTGCCCTGCTTAACTTCTGCACAATATTCATCGGACACAATTATCACCAGCCCTTCATTGGGATGTTACAGGAGCTGGAGGAGGTCAGGGTCTTGGACTTCATTCCTGATTGGCTGTATGTTCGCACTTCAGCCAGGTTCAGATTGCCCACCTACACTACCTCACAGAGATCTAGATCACTTTCTCAGATGATGCCTGAAGATCAGGCAGCTGCTCCCCCTATGAGGGATCCATCTGTTTTGAACCCCCACCCATGGGTGGATCCAGTGCCTGCCTGGATAATGAAAGAGTTTGCTGCAATGTCAGAGGCCGAGGGGTTGGAGGAACAAATGCTAAGGGCAGGAATACTGGCATCATTACAGGATGCTCCTGACAACCCTGATGCTAAAGTGGAGGTGCCCAAATCATCAGTTTCCTCTCTGCGACTCCAGCAGCTGGAGAAGATGGGCTTCCCCACAGAGAAAGCTGTACTGGCGTTAGCGGCCTCAAAACAGCTAGATGGCGCCATTTCTCTGCTCATTGATGACGGCGTCGGAGAACAGGCGGTGGTGGTATCGAAAGGGAAGAGCCCTCTGATGCCGGGGAGTACGTAGACGACCTCACACTCCTGGACAGTTTGCTCTTGTGCAGTAAACTGAACTTACATTATGCTTGGGTTTTGCTGAGCTTTAATATTAGTTTTTCCCTGTGGGCTACTTGTAGAACTAATTTAATGATGAGAATTCATAGGGGGAGGAAGAACTGAGTTGTTCTTTTGCCATGACTGGGAATCTAATCAAGTGTAGATGCAAACTTGACTGTGTTGGAGACCATTTTTGTATCTGCACATAAAATGTACATTGGAGAGAGTGAATGTAATTTACTTATGCTGTAATCACGTTTAATGAATACTGTTgtaacacaaataaatacaggggacatgttaaaaaacaaa

Function

symbol description
rhbdd3 Predicted to enable serine-type endopeptidase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RHBDD3 (rhomboid domain containing 3).

NR:

description
rhomboid domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802288.1 True 2330 mRNA 0.44 5 19357954 19362474

Neighbor

gene id symbol gene type direction distance location
si:ch211-225b11.4 LOC103353536,LOC104950175 coding downstream 107117 19237905 ~ 19250837 (-)
pik3ip1 pik3ip1 coding downstream 123388 19227784 ~ 19234566 (-)
wscd2 wscd2,LOC102782304 coding downstream 218517 19122703 ~ 19139437 (-)
iscu iscu,LOC104937683 coding downstream 271298 19084932 ~ 19086656 (-)
LOC120561036 dao coding downstream 357290 18992985 ~ 19000664 (-)
ccdc117 ccdc117 coding upstream 170205 19532679 ~ 19536142 (-)
ank1a LOC103374899,LOC102197896,LOC108234527,LOC101476008,LOC106585259,LOC104941581 coding upstream 192909 19555383 ~ 19647018 (-)
ebf2 LOC101476299,LOC100704273 coding upstream 308545 19671019 ~ 19703093 (-)
LOC120561341 NA coding upstream 362944 19725418 ~ 19730638 (-)
usp39 usp39,LOC102783496 coding upstream 391659 19754133 ~ 19761050 (-)
G62957 NA non-coding downstream 64474 19293277 ~ 19293480 (-)
G62956 dnah10 non-coding downstream 65933 19291756 ~ 19292021 (-)
G62955 NA non-coding downstream 66311 19291422 ~ 19291643 (-)
G62954 dnah10,LOC102798403 non-coding downstream 66668 19291028 ~ 19291286 (-)
G62953 dnah10,LOC102798403 non-coding downstream 67443 19290295 ~ 19290511 (-)
G62991 rasl10a,LOC102798989 non-coding upstream 79206 19441680 ~ 19449021 (-)
G63034 NA non-coding upstream 91377 19453851 ~ 19454055 (-)
G63050 NA non-coding upstream 143014 19505488 ~ 19509264 (-)
LOC120560999 NA non-coding upstream 152194 19514668 ~ 19517452 (-)
G63060 NA non-coding upstream 167947 19530421 ~ 19530626 (-)
si:ch211-225b11.1 LOC103353539,LOC101465611,LOC100705171 other downstream 120868 19179505 ~ 19237086 (-)
ficd ficd other downstream 255480 19100244 ~ 19102474 (-)
mmab mmab other downstream 620548 18734908 ~ 18737406 (-)
G62626 LOC103357464 other downstream 845693 18510155 ~ 18512261 (-)
zgc:158398 NA other downstream 865547 18488162 ~ 18492407 (-)
LOC120560442 LOC104920315,LOC103374896,LOC100704901 other upstream 186977 19549451 ~ 19554908 (-)
LOC120561342 NA other upstream 348974 19711448 ~ 19731573 (-)
LOC120561469 NA other upstream 746942 20109416 ~ 20124872 (-)
G63345 NA other upstream 906646 20269120 ~ 20282211 (-)
LOC120560417 LOC104920278,LOC103361005,LOC106523804,LOC103398708,LOC101066291,LOC101475922 other upstream 1089120 20451594 ~ 20477805 (-)

Expression


Co-expression Network