gal3st1a (gal3st1)


Basic Information

Item Value
gene id gal3st1a
gene name gal3st1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18622821 ~ 18628475 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802340.1
acatgcagcactgcgtcgaggactgatcctctgtatatgggcacacactctaccagGTAATCCTTGATTCTGCTGGACCATGGCTGGCAAGCAAGGGAGGCAGTGGAGGTCCATGTGCAAAGGCCTGGTCCTGGGTACCCTCCTGACCAGCTGCATGATCCTGCTTTACTGCCTCTCCACTCCCCAGATCCACTACACTCTGCCTGAAGTTCCAGTGCCTTATTCCTGTGCCCATCGTCCATCCCAGCTCCATCCCAAACCAACCACAAACAGCTCACAACAAACCCCGGGTCAGACCTGCACTCCTAAGGTGGATATCATGTTCATGAAGACCCACAAAACAGCCAGCAGCACCTTCCTAAACGTCCTTTTTCGCTTTGGGGAGAAGCACCGGCTCAAATTTGCCTTCCCTGACAGCAGAAATGACTTCTTCTATCCATCTCTTTTCCAACGCTCCCAGGTTAAAGACTACAGACCTGGGATGTGCTTCAATATTATCTGTAATCACATGCGCCTTAATGCACCTGAGGTGGCCAAGTTGCTACCTATGGACACTTCCTACATCACTATTCTGCGAGACCCTGCAGAGCTTTTTGAGTCATCCTTCCACTATTTTGGCCAGCTGGTGCCTTTTACCTGGAAGATACCAGGTGATGATAAGCTGACTGAGTTTCTACGTGACCCCAATTACTACTTTGATCCACAGGGCTTCAACTCTTTCTACCTCAAGAATCTGCTGTTCTTCGACTTTGGACAGGACAACACTCTGGAGCTGGATGATCCGCAGGTAGAAGAGGTAATCAGATTCATTACTGAGCGTTTTCAGCTGGTCATGTTGGTGGAATACTTTGAGGAATCACTCATCCTTCTCAAGGATGCCCTCTGCTGGGAGCTGGACGACGTGCTCTTCTTCAAGCTTAACGCCCGCAAGGGATCCACTGTGTCTAAACTCACCCCTGAGCTGAGGGCCCGGGCTCTTGAGTGGAATGCTATTGACTGGAAGCTATACCAGCATTTCAACCACACCTTTTGGAAAAGAGTAGATGCATATGGACGGCGGCGCATGGCTGAGGATGTGGCAGAACTCAAGAGAAGGAACACGGAGATGGCATCCATCTGCATTGAGGGTGGTCGTGCTGTAGAAGCTGGCAGCATCCAAGAGACTGCCATGCAGCCCTGGCAGCCCATCGGACAGAAATCCATCATGGGCTATAACCTGAAGAAGAATGTGGACAAGGCACATCGAAAGTTGTGTCGAAAGATGTTGATGCCAGAGCTTCAGTACTTAACAGAGCTTGGGGTTAACCTGTGGATCACCAAGTTGTGGGGCCATGTCCGAGATATCCTTAACTGGTGACTAGACATGTGAGCAAGGGGGCCAACTCAACTCTGACAGAATGTATTGAAACAGACTGTGTGGCTAATAGAGTGAAATGTTTAAGTTTTCTGTCACATTTCAATCCTATGAcctgtcttgttttgtttaaatgtgtCAACATTGACTTGTTTGCTTTTCATATGATTGTGTGCTGTAATGTATCTGATGGATGTTTGAGAAAAACACTTCACAATCTACAAATACTGAACCAGTTTCCTAAACGCAGATGAGGCCTAGTATTGTTCTCTATGTTTGTGAGTCAattatacaaaatgtaaatgttcttACTCTCAGATGTGAGCTTGTTTTAATGGAGCAGATGAGGGAACAATGACGTCTGGGACTACTTTGATAAGCTTTTTAATGgaataaagacaaaaatgttGCCATCCCTGCCAACTTTAAAGGTTCTTTGAAGGCACAGAAAGAATGGTACTTTGCTTTGAGCTTAATATTGTCTTTGATGTCCATCCCTCAGAGTTGAAACATCTAAGTTCTAAGAGACTGAAAGACCACTAAGGGCTGAAGTACAGATGTGAAAATAGTGAATGTAAGTACTACATCCTACTTTACTGTCTGTGGAGGACAAAAACATCCATCGTTTTTAAAGTAAGTGAACAAATACAGACGTTTCTAATGGCAGACGTTTTCACATTCACAAGGAAAGCACAGGGGCAACAAATGATCATTCTGTTCCTACAGCTAGCCATCGTTTTTgttattaattacacctgtgcagtaacatgtcaaaatgtctgtcaTGAAATAGGTCTGATCAATAATATTTAAAGGAATCAATACATTAGAAGTACAGCACTATgcattcaaaaagaaaaataatttccTTATTCATTTACTTTTCTTATCCATTTTTATAGCATATAATGTGTTGTATGTTGAGCTTTCTGCCATATGATATAAAATGTTCCCTTCTTTGCAA
>XM_039802341.1
TCAGACTCCAGTGTCTCCACTCAATAGCCCTCTGTATGTAGACACAGAATGGGAACTATACAGCCCCTCTCGTCTCCTCCCTTTTTGTCTTTCTCCCTGCCCTCTTTCTTCACATTGAATGACAAGTGCATGTCCCCTGACACACTTCCTGACGTCACAGATGGATAGATGAGCCTCCCTGCAGAGCTTTATTCAGCGAGGTTCGTTTTTAGAATTGAAAGTTGAGGGGGAGGCGGCAGGTGGCCCAAGGCATCAGGTGTGCATGTAGAGAGGCAGCAACCAGATGAATGAGCTCCGTAGTGCTGGGCATGCGACAAGGGAAGCACGGGACTGTGCTGCAGTATGTGCATGTCGAGATCTGACATAAGAACGGCTTGGGAAAAGAAGAGGACAATGCAGTTGGACAAGAaacacttttagtttttctttggaTTTATGTATGAGGGTAATCCTTGATTCTGCTGGACCATGGCTGGCAAGCAAGGGAGGCAGTGGAGGTCCATGTGCAAAGGCCTGGTCCTGGGTACCCTCCTGACCAGCTGCATGATCCTGCTTTACTGCCTCTCCACTCCCCAGATCCACTACACTCTGCCTGAAGTTCCAGTGCCTTATTCCTGTGCCCATCGTCCATCCCAGCTCCATCCCAAACCAACCACAAACAGCTCACAACAAACCCCGGGTCAGACCTGCACTCCTAAGGTGGATATCATGTTCATGAAGACCCACAAAACAGCCAGCAGCACCTTCCTAAACGTCCTTTTTCGCTTTGGGGAGAAGCACCGGCTCAAATTTGCCTTCCCTGACAGCAGAAATGACTTCTTCTATCCATCTCTTTTCCAACGCTCCCAGGTTAAAGACTACAGACCTGGGATGTGCTTCAATATTATCTGTAATCACATGCGCCTTAATGCACCTGAGGTGGCCAAGTTGCTACCTATGGACACTTCCTACATCACTATTCTGCGAGACCCTGCAGAGCTTTTTGAGTCATCCTTCCACTATTTTGGCCAGCTGGTGCCTTTTACCTGGAAGATACCAGGTGATGATAAGCTGACTGAGTTTCTACGTGACCCCAATTACTACTTTGATCCACAGGGCTTCAACTCTTTCTACCTCAAGAATCTGCTGTTCTTCGACTTTGGACAGGACAACACTCTGGAGCTGGATGATCCGCAGGTAGAAGAGGTAATCAGATTCATTACTGAGCGTTTTCAGCTGGTCATGTTGGTGGAATACTTTGAGGAATCACTCATCCTTCTCAAGGATGCCCTCTGCTGGGAGCTGGACGACGTGCTCTTCTTCAAGCTTAACGCCCGCAAGGGATCCACTGTGTCTAAACTCACCCCTGAGCTGAGGGCCCGGGCTCTTGAGTGGAATGCTATTGACTGGAAGCTATACCAGCATTTCAACCACACCTTTTGGAAAAGAGTAGATGCATATGGACGGCGGCGCATGGCTGAGGATGTGGCAGAACTCAAGAGAAGGAACACGGAGATGGCATCCATCTGCATTGAGGGTGGTCGTGCTGTAGAAGCTGGCAGCATCCAAGAGACTGCCATGCAGCCCTGGCAGCCCATCGGACAGAAATCCATCATGGGCTATAACCTGAAGAAGAATGTGGACAAGGCACATCGAAAGTTGTGTCGAAAGATGTTGATGCCAGAGCTTCAGTACTTAACAGAGCTTGGGGTTAACCTGTGGATCACCAAGTTGTGGGGCCATGTCCGAGATATCCTTAACTGGTGACTAGACATGTGAGCAAGGGGGCCAACTCAACTCTGACAGAATGTATTGAAACAGACTGTGTGGCTAATAGAGTGAAATGTTTAAGTTTTCTGTCACATTTCAATCCTATGAcctgtcttgttttgtttaaatgtgtCAACATTGACTTGTTTGCTTTTCATATGATTGTGTGCTGTAATGTATCTGATGGATGTTTGAGAAAAACACTTCACAATCTACAAATACTGAACCAGTTTCCTAAACGCAGATGAGGCCTAGTATTGTTCTCTATGTTTGTGAGTCAattatacaaaatgtaaatgttcttACTCTCAGATGTGAGCTTGTTTTAATGGAGCAGATGAGGGAACAATGACGTCTGGGACTACTTTGATAAGCTTTTTAATGgaataaagacaaaaatgttGCCATCCCTGCCAACTTTAAAGGTTCTTTGAAGGCACAGAAAGAATGGTACTTTGCTTTGAGCTTAATATTGTCTTTGATGTCCATCCCTCAGAGTTGAAACATCTAAGTTCTAAGAGACTGAAAGACCACTAAGGGCTGAAGTACAGATGTGAAAATAGTGAATGTAAGTACTACATCCTACTTTACTGTCTGTGGAGGACAAAAACATCCATCGTTTTTAAAGTAAGTGAACAAATACAGACGTTTCTAATGGCAGACGTTTTCACATTCACAAGGAAAGCACAGGGGCAACAAATGATCATTCTGTTCCTACAGCTAGCCATCGTTTTTgttattaattacacctgtgcagtaacatgtcaaaatgtctgtcaTGAAATAGGTCTGATCAATAATATTTAAAGGAATCAATACATTAGAAGTACAGCACTATgcattcaaaaagaaaaataatttccTTATTCATTTACTTTTCTTATCCATTTTTATAGCATATAATGTGTTGTATGTTGAGCTTTCTGCCATATGATATAAAATGTTCCCTTCTTTGCAA

Function

symbol description
gal3st1 Enables galactosylceramide sulfotransferase activity. Involved in glycerolipid metabolic process and sphingolipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of plasma membrane.

NR:

description
galactosylceramide sulfotransferase-like

GO: NA

KEGG:

id description
K01019 GAL3ST1; galactosylceramide sulfotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802340.1 False 2318 mRNA 0.44 3 18622821 18626453
XM_039802341.1 True 2707 mRNA 0.45 3 18622821 18628475

Neighbor

gene id symbol gene type direction distance location
lztr1 lztr1 coding downstream 1667 18613470 ~ 18621154 (-)
cldn26 LOC103357467,LOC104947832 coding downstream 11127 18610705 ~ 18611694 (-)
LOC120560137 aifm3 coding downstream 12879 18512509 ~ 18609942 (-)
pes pes1,LOC101476782,LOC102794482 coding upstream 1492 18629967 ~ 18637041 (-)
pole pole,LOC102794752 coding upstream 14396 18642871 ~ 18659829 (-)
foxn4 foxn4 coding upstream 56986 18685461 ~ 18692897 (-)
kctd10 kctd10 coding upstream 86946 18715421 ~ 18720543 (-)
trpv4 trpv4 coding upstream 219262 18847737 ~ 18861234 (-)
G62625 NA non-coding downstream 82806 18539126 ~ 18540015 (-)
G62630 NA non-coding downstream 87540 18534933 ~ 18535281 (-)
G62629 NA non-coding downstream 100946 18521564 ~ 18521875 (-)
G62586 plekha2 non-coding downstream 224875 18394836 ~ 18397946 (-)
G62571 NA non-coding downstream 265068 18355242 ~ 18357753 (-)
G62733 NA non-coding upstream 118718 18747193 ~ 18748609 (-)
G62771 NA non-coding upstream 208499 18836974 ~ 18845777 (-)
G62772 NA non-coding upstream 276844 18905319 ~ 18906567 (-)
G62817 NA non-coding upstream 328782 18957257 ~ 18961477 (-)
G62872 NA non-coding upstream 459288 19087763 ~ 19088373 (-)
G62626 LOC103357464 other downstream 110560 18510155 ~ 18512261 (-)
zgc:158398 NA other downstream 130414 18488162 ~ 18492407 (-)
iqcd NA other downstream 179803 18437676 ~ 18443018 (-)
G62582 LOC106098714,LOC103357453,LOC102788116 other downstream 236552 18383005 ~ 18386269 (-)
G62580 tacc1,LOC101470878,LOC102206806 other downstream 242319 18377602 ~ 18380502 (-)
mmab mmab other upstream 106433 18734908 ~ 18737406 (-)
ficd ficd other upstream 471769 19100244 ~ 19102474 (-)
si:ch211-225b11.1 LOC103353539,LOC101465611,LOC100705171 other upstream 551030 19179505 ~ 19237086 (-)
LOC120560442 LOC104920315,LOC103374896,LOC100704901 other upstream 920976 19549451 ~ 19554908 (-)
LOC120561342 NA other upstream 1082973 19711448 ~ 19731573 (-)

Expression


Co-expression Network