LOC120560154 (nefl,LOC102797482,LOC104959585)


Basic Information

Item Value
gene id LOC120560154
gene name nefl,LOC102797482,LOC104959585
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2262909 ~ 2266743 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802356.1
TACACACAGCACTGAAATGTCATTTACCACAAAGTGCCTTGTTGCTCCACCGCTTATCCCCGCCTCCTCCATCTCCAACACTCATCCTCACCCCACCCCATCTCTCCCTTGGCTGAGACTGGCTAGCTGGCACCATTATCAATTCCTTCTGTCAGCATGCCTGCAAAAAAAAGCTTACGTCACAGTCATTACTGGCTCTATAAAAGCCAGTGTAATGCAGATTCACTGTGCAGTCAACCCAGCTACATTCCTAGACATAGAGCAGCCTGTTTCTCGAGTCATGGCTTCCAGCGGCTTTGACCCTTACTTCCCTTCTACTTACAAGAGGAGGGTAGTTGTGCGCAGTGCAGGATatggagctggaggaggaaTAGGATCAAGGTCTGCCTACTCCAGCCACTCCGCCCCAATAACTTCCTATGCATCTTCACGCAGAAGTTATCCAGCACACACCCGAGCTATTTCCAGCTACTCCTCCATGCTTTCTGCTCCAGAGTCTGCAGTTGCCACTGAAGTTCGCCTTGACCAAGCAGCCCAGGTCAGCTCTGAGTTCAAAGTACTGCGGACCCAGGAGAAGGCTGAGCTGCAGGACCTGAATGACCGCTTTGTAAACTTCATTGACAGGGTCCATGAACTGGAGCAGCAGAACAAGTTGCTGGAGACTgaactcctgctgctcaggcaGAGGCAGGCGGAGCCGTCCAACATTCGGGCCCTGTATGAGCATGAACTCCGCCAGCTCCGTGCTGCTGTGGAAGAGGCCCGCCATGAGAAGCATGCAGCCCAGCACCACAGGGATGAGATGGAGAACGTGTTAGGTAACATGCAAAAGCGCTACGAGGAGGAAGTGCTTGGCAGAGAGGAAGCAGAGGGCAGGCTCATGGATGCCAGGAAGGGAGCAGATGAAGCTGCACTGGCCCGGGCTGAGCTGGAGAAAAGAGTTGGGATCCTGCTGGATGAGCTGGCCTTCCTGAAGCACCTCTGTGAGAGTGAGATAGCAGAGCTGCAGGCCCAAATACAATACAGCGCAGAGGTGTCAGTGGAGATGGAGGTCGCCAAACCCGACCTATCCGCTGCTCTCCGTGACATCCGAGCCCAATATGAGAAGCTGGCCCATCGCAACCTCCAATCAGCCGAAGAATGGTTCTGCAACAAGGTAAATGTGATGACAGTGGGCACTTCCCGCAACACAGAGGGTGCACGTAACGCCAAAGACGAGGCTGCAGAATACCGCCGGCTCCTCAAAGCCAGGACGCTGGAGATCGATGCCTGCCGTGAGATGAATCAAACTCTGGAAAACCAACTGCAGGAAGTGGAAGAGAAACAGAGCGCTGAGATCTCCGCTCTGCAGGATGCGATAAGTCAACTGGAGGAAGAGTTGAGGGCAAACAAGAATGACATGGCTCGCTACATGAAAGATTACCAGGACCTCTTGAACGTGAAGATGGCCTTGGATATTGAGATTGCAGCCTACAGGAAGCTCCTTGAAGGAGAAGAGAACCGTCTAAATGTGGCAGGACCGGGGTCCTTCCACGTTTACTCCCAATCCACGTACGCTGCTCCGTCCTACGGAAGAAGCCAGTTCTCCATGCCGTTTTCAGCCGCTTCAGCTTCAGCTCCGTACATGCTGAGCTCCCGCTTGTATACTTCATCGCTCTCCACAGAGGAGACAATATCCGCAAGCCAAGCACAGCAGGCGGAGGCCAGCCCTCctcaagaggaggaggaggaggaggtgaaggaAGAGCAGGTGGAAGAGGAAGATAAGGAAGAAGTAGAGGAGAGGCAGGGAGaacagaaggaggaggaggaggaggaggaggaggaggaggcagaggaagatCAGGGagaagagggggaggaagaggtggaggaggcggaagaaaagggaaaacaagaagaggaagaagcagaTGGAGAAGAGGGTGAGGCAGAGGAtggagaaaaagaagatgaggaggaaggaggagaggaggacgcCAAGCAGCAAGAGGAAGAGGGTGACGACGAGGGTGAGAAGGAGGAAAAAGAAGCTGAAAAGCAAGAGGAGGTGGAGGCCAAAGAGAAAAACCCATAAATACAAAAGTTTAAATtgaaatgctttaaaaaaaaatacctgctAGCATTGCAGCAGAAGGATGTCTTCTCCGGTGCTCGAAATGTACAGAGATAGCTCTCTAATTCAAACCAAATTAAAATCAGAAGTCAACATGTTGGTGAACAAATGCTCTGTATGATCAACTTGAGTGACCAACAGCATGTATGCAAACTGTACCAGCTAAGAAATGAAACATTGTAAAagcttgatgatgatgatgaagacagGATGTGACAATAGTGTCTAGAGTAGAAATTCTGCTTTGAGGAGATGTGTAAGcaaacacctgtgtgtgttttactgtcACCAATACTGTACGCCTGTCTGTACTGTGTGTGCAATACCCAGTTTGAAATGCCTTACTTCAAGTCCTCACTTAGTGCTTTAAATCCATGATGTGCTGCGTTAAACTCCAATAAAGCCTTGAAGCCTTGTCAACCCA

Function

symbol description
nefl Enables identical protein binding activity and protein C-terminus binding activity. A structural constituent of cytoskeleton. Involved in axonal transport and neurofilament bundle assembly. Located in axon and neurofilament. Implicated in Charcot-Marie-Tooth disease (multiple); amyotrophic lateral sclerosis; and invasive ductal carcinoma. Biomarker of several diseases, including COVID-19; Lewy body dementia; autoimmune disease (multiple); neurodegenerative disease (multiple); and prion disease (multiple).

NR:

description
PREDICTED: neurofilament light polypeptide

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802356.1 True 2540 mRNA 0.51 5 2262909 2266743

Neighbor

gene id symbol gene type direction distance location
klhl22 klhl22 coding upstream 59843 2192912 ~ 2203066 (+)
LOC120560792 gnrh1 coding upstream 102282 2157612 ~ 2160627 (+)
kctd9a kctd9 coding upstream 106320 2140097 ~ 2156589 (+)
ccdc92 ccdc92 coding upstream 208428 2037572 ~ 2054481 (+)
ncor2 ncor2 coding upstream 314194 1804636 ~ 1948715 (+)
LOC120561412 lrrtm4,LOC104959581,LOC103353625,LOC101488074,LOC100703069,LOC102799547 coding downstream 99007 2365750 ~ 2434942 (+)
LOC120560453 NA coding downstream 271211 2537954 ~ 2539133 (+)
anapc5 anapc5,LOC102800026 coding downstream 294006 2560749 ~ 2577050 (+)
lrrc75ba lrrc75b,LOC104956515,LOC102775864 coding downstream 334147 2600890 ~ 2616973 (+)
asphd2 asphd2 coding downstream 363761 2630504 ~ 2634683 (+)
G58478 NA non-coding upstream 130635 2131948 ~ 2132274 (+)
G58382 NA non-coding upstream 173116 2074820 ~ 2089793 (+)
G58390 lgi3 non-coding upstream 191426 2067585 ~ 2071483 (+)
G58384 NA non-coding upstream 199907 2062620 ~ 2063002 (+)
G58383 NA non-coding upstream 200340 2062074 ~ 2062569 (+)
G58574 NA non-coding downstream 169641 2436384 ~ 2437472 (+)
G58597 NA non-coding downstream 256696 2523439 ~ 2523638 (+)
G58598 NA non-coding downstream 256898 2523641 ~ 2523934 (+)
G58599 NA non-coding downstream 257464 2524207 ~ 2524567 (+)
G58601 NA non-coding downstream 259309 2526052 ~ 2526270 (+)
lmx1bb lmx1b,LOC102213269,LOC100696266 other upstream 1425048 789405 ~ 837861 (+)
LOC120560799 NA other upstream 2050526 210742 ~ 212383 (+)
dock5 dock5 other downstream 6935 2273678 ~ 2312665 (+)
lman2lb NA other downstream 611631 2878374 ~ 2883861 (+)
LOC120560521 tjp2 other downstream 1168422 3435165 ~ 3522756 (+)
G59086 NA other downstream 1850536 4117279 ~ 4117631 (+)
G59172 sub1 other downstream 2157398 4424141 ~ 4429981 (+)

Expression


Co-expression Network