kcnip3b (kcnip3,LOC102307840,LOC102210345,LOC104951840,LOC103397788,LOC101482209)


Basic Information

Item Value
gene id kcnip3b
gene name kcnip3,LOC102307840,LOC102210345,LOC104951840,LOC103397788,LOC101482209
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26197240 ~ 26245476 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802416.1
cattCCTTCGCATCCAGTGGAGCGGCAGTCGGAGATTGAGGGTCCGCGCAGAGAGGACGCACACCTTCGGGCAGAAAACACCCGTTAGCCTACAACACAAGAAAACATGCAGGCGGATGGCAAGGTGGTCGATGGTAGCCTGCTGGGAGATGCCAACGGCGTCGAACCTGCGCCGGGCAGAATGAAGGATTCTGGGAAGTGGCAGAAGCCGCGGTTCTCTCGGAAAGCTCTGATGAAGTGTTGCCTGGTTAAATGGATTATCGCCAGTACACAGCCACAGGacaaagATGaGAGCAGCGACAGTGACTTGGAGCTGTCAACGGTGCGTCACCAACCAGAGGGTCTGGATCAGCTGCAGGCTCAGACCAAGTTCACCAGGAAGGAACTTCAGTCCCTCTATCGAGGCTTCAAGAACGAGTGTCCCAGTGGGCTGGTTGATGAGGAGACATTCAAGACCATCTATTCTCAGTTCTTTCCCCAAGGAGATGCAACCACCTACGCTCACTTCCTGTTCAACGCATTTGACATCGACAGGAACGGTTCAATCCGCTTTGAGGACTTTGTCATCGGCCTGTCGGTGTTGCTCAGAGGTTCGGTCACTGAGAAGCTCAACTGGGCCTTCAACCTCTATGACATTAATAAGGACGGCTACATCACCAAAGAGGAGATGCTGGCGATTATGAAGTCAATCTACGACATGATGGGGAGGTACACCTACCCCTGTGTGAGAGATGAAGCGCCCTCTGAACACGTGGACAAGTTCTTCCAGAAAATGGATAAAAACCGAGATGGTGTAGTGACCATTGAAGAGTTCATTGAGACCTGTCAGAAGgaCGAGAACATCATGAACTCCATGCAGCTGTTTGAGAATGTGATATAAGAAAGCCCACCTGcacaactcacacacaaacatagtaaccccaaccctaacccagGAACTAGACGTTTTTTATTTCTCGCCACACTCCTTTAGCTGTATCTTGCAAACTGCTTCTGGATTAAAAAGGACTGCTACagacagaagaagagaagagtttCCTGGATAAAAATTCCCCCGTCTGTccggtgtgttttttgtgtcctAATTGAAGAAACACGAAAAGCTCCTTGTGTTTCTATCGTCGGACAAAAATAATCAACAACAACCAACAAGGAATGGAGAAGCTTACAATATTCCTCTGACCTGAGCACACAAGGATACAAGCTTTAACACTACACCtcacctctctcacacacactgtttctctttcccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagctgttgttTCCTCAAGAGTTGTTAGAGCACTGGATGAGGTGAACTAAGAGAATAAATAttgcaaaagaaaaagagaaatgaaCTTAAGCATGTTTGTCATCAAATATGTGATGTGGAATAAGCTTGCACTACACTTTTATGACTGTATTATATGCGCCTGAAGTAAAGGCACTGTAGATACCTGCACCTGATACACCACtggtgtgtatgtatatatgtatagttAATAATTATATATCCCACCTTGTATTGGCCTCATCTGTGCTGCACTGGGTGAAGGAATAGGACCAGAACTGaatttttgttttagaaatcTCTGTTTAACATTATGTTTAGTAACAGTTCTTcacagattattaaaaaaaatctcctttttttgtattttggaaGATTATGCTTTGCTGGTCAGATTGGAAAATGGAGTCTGTACAGTACTGTGAAGAAGCAAAAGGACTGTCAAAAGTGTGTTCTTATGCTGAATTATGCTTTATCTTGGTTCTTCAGTATCTTCGAGCATGCTGACTCTAAGTCCCACAGtattatgtacagtacagtaagaCCTTTGTGATGTTGATTAATTAAAGATGCTCTCAGCTGCGA
>XM_039802417.1
cattCCTTCGCATCCAGTGGAGCGGCAGTCGGAGATTGAGGGTCCGCGCAGAGAGGACGCACACCTTCGGGCAGAAAACACCCGTTAGCCTACAACACAAGAAAACATGCAGGCGGATGGCAAGGTGGTCGATGGTAGCCTGCTGGGAGATGCCAACGGCGTCGAACCTGCGCCGGGCAGAATGAAGGATTCTGGGAAGTGGCAGAAGCCGCGGTTCTCTCGGAAAGCTCTGATGAAGTGTTGCCTGGTTAAATGGATTATCGCCAGTACACAGCCACAGGacaaagaGAGCAGCGACAGTGACTTGGAGCTGTCAACGGTGCGTCACCAACCAGAGGGTCTGGATCAGCTGCAGGCTCAGACCAAGTTCACCAGGAAGGAACTTCAGTCCCTCTATCGAGGCTTCAAGAACGAGTGTCCCAGTGGGCTGGTTGATGAGGAGACATTCAAGACCATCTATTCTCAGTTCTTTCCCCAAGGAGATGCAACCACCTACGCTCACTTCCTGTTCAACGCATTTGACATCGACAGGAACGGTTCAATCCGCTTTGAGGACTTTGTCATCGGCCTGTCGGTGTTGCTCAGAGGTTCGGTCACTGAGAAGCTCAACTGGGCCTTCAACCTCTATGACATTAATAAGGACGGCTACATCACCAAAGAGGAGATGCTGGCGATTATGAAGTCAATCTACGACATGATGGGGAGGTACACCTACCCCTGTGTGAGAGATGAAGCGCCCTCTGAACACGTGGACAAGTTCTTCCAGAAAATGGATAAAAACCGAGATGGTGTAGTGACCATTGAAGAGTTCATTGAGACCTGTCAGAAGgaCGAGAACATCATGAACTCCATGCAGCTGTTTGAGAATGTGATATAAGAAAGCCCACCTGcacaactcacacacaaacatagtaaccccaaccctaacccagGAACTAGACGTTTTTTATTTCTCGCCACACTCCTTTAGCTGTATCTTGCAAACTGCTTCTGGATTAAAAAGGACTGCTACagacagaagaagagaagagtttCCTGGATAAAAATTCCCCCGTCTGTccggtgtgttttttgtgtcctAATTGAAGAAACACGAAAAGCTCCTTGTGTTTCTATCGTCGGACAAAAATAATCAACAACAACCAACAAGGAATGGAGAAGCTTACAATATTCCTCTGACCTGAGCACACAAGGATACAAGCTTTAACACTACACCtcacctctctcacacacactgtttctctttcccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagctgttgttTCCTCAAGAGTTGTTAGAGCACTGGATGAGGTGAACTAAGAGAATAAATAttgcaaaagaaaaagagaaatgaaCTTAAGCATGTTTGTCATCAAATATGTGATGTGGAATAAGCTTGCACTACACTTTTATGACTGTATTATATGCGCCTGAAGTAAAGGCACTGTAGATACCTGCACCTGATACACCACtggtgtgtatgtatatatgtatagttAATAATTATATATCCCACCTTGTATTGGCCTCATCTGTGCTGCACTGGGTGAAGGAATAGGACCAGAACTGaatttttgttttagaaatcTCTGTTTAACATTATGTTTAGTAACAGTTCTTcacagattattaaaaaaaatctcctttttttgtattttggaaGATTATGCTTTGCTGGTCAGATTGGAAAATGGAGTCTGTACAGTACTGTGAAGAAGCAAAAGGACTGTCAAAAGTGTGTTCTTATGCTGAATTATGCTTTATCTTGGTTCTTCAGTATCTTCGAGCATGCTGACTCTAAGTCCCACAGtattatgtacagtacagtaagaCCTTTGTGATGTTGATTAATTAAAGATGCTCTCAGCTGCGA
>XM_039802418.1
CTAATGTTGTTTTGCCGTTTTAGGGCATGCAAGATGAGAACACTTTGGTAtttcatgtactgtatttcaATAAGTCGTTTGTGTTTACCTGCACTTTCTCCCACCTAATGGGAGCAAAATCATGTAAATGGACATTGAATTCTTTGTTTTTCccaaaagacattttcatcTAAAACCAAGATGTGATTCATGAGTGTAAACTATGACGTGAGGACTGATAATAGCTGTTTGGATTAAGAGGGTGCGCAGTAACTTGTGTCTTTGCCATTCTGAGCTCCTGAGAGTGTGTGCTGGAGGAAAGTCTGGAAAGTGACTCTAAACGTCTCCTTTAATGCATCGTAATAAATGGCTAGTGACACAACCCCCATTTTCCCTCATGAGTCTAGAGAGAGAGGTTTTCCATATATGTCGGCTTCCACATATTTTCCACTTCAGCATCAGTGTTGACATTATAGAGCAGCCTTCGTCCAGCCTGCTGGCCTGGTTCTCATGCTGCCTCCTGTGCCTGGAAACAAACCCATGCAGTCGCCCAACAACAAGACTTGATTCCTGTCACTTCTTGGCTCACCTCTGTTGAAAACACTTGTTGTTGACTTGCCCAGCCCAGCGTTACTCGTATCGGCCCAGGCTTCCTTTCATCTCTCCCCAGGGCCAGGCCTTCTCGTGCAGGCTTGGCCCTGAGTGGGCTCCCCCTGGCCTGACATCATGGGGATCCAGGGCATGGAGCTGTTTGCCATCGGTGTGGTCATCATCCTTTTCATGGCAGTTCTCAAGCAGTTTGGCATCTTGGAGCCCATGTCCTCATTTGAAGATGaGAGCAGCGACAGTGACTTGGAGCTGTCAACGGTGCGTCACCAACCAGAGGGTCTGGATCAGCTGCAGGCTCAGACCAAGTTCACCAGGAAGGAACTTCAGTCCCTCTATCGAGGCTTCAAGAACGAGTGTCCCAGTGGGCTGGTTGATGAGGAGACATTCAAGACCATCTATTCTCAGTTCTTTCCCCAAGGAGATGCAACCACCTACGCTCACTTCCTGTTCAACGCATTTGACATCGACAGGAACGGTTCAATCCGCTTTGAGGACTTTGTCATCGGCCTGTCGGTGTTGCTCAGAGGTTCGGTCACTGAGAAGCTCAACTGGGCCTTCAACCTCTATGACATTAATAAGGACGGCTACATCACCAAAGAGGAGATGCTGGCGATTATGAAGTCAATCTACGACATGATGGGGAGGTACACCTACCCCTGTGTGAGAGATGAAGCGCCCTCTGAACACGTGGACAAGTTCTTCCAGAAAATGGATAAAAACCGAGATGGTGTAGTGACCATTGAAGAGTTCATTGAGACCTGTCAGAAGgaCGAGAACATCATGAACTCCATGCAGCTGTTTGAGAATGTGATATAAGAAAGCCCACCTGcacaactcacacacaaacatagtaaccccaaccctaacccagGAACTAGACGTTTTTTATTTCTCGCCACACTCCTTTAGCTGTATCTTGCAAACTGCTTCTGGATTAAAAAGGACTGCTACagacagaagaagagaagagtttCCTGGATAAAAATTCCCCCGTCTGTccggtgtgttttttgtgtcctAATTGAAGAAACACGAAAAGCTCCTTGTGTTTCTATCGTCGGACAAAAATAATCAACAACAACCAACAAGGAATGGAGAAGCTTACAATATTCCTCTGACCTGAGCACACAAGGATACAAGCTTTAACACTACACCtcacctctctcacacacactgtttctctttcccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagctgttgttTCCTCAAGAGTTGTTAGAGCACTGGATGAGGTGAACTAAGAGAATAAATAttgcaaaagaaaaagagaaatgaaCTTAAGCATGTTTGTCATCAAATATGTGATGTGGAATAAGCTTGCACTACACTTTTATGACTGTATTATATGCGCCTGAAGTAAAGGCACTGTAGATACCTGCACCTGATACACCACtggtgtgtatgtatatatgtatagttAATAATTATATATCCCACCTTGTATTGGCCTCATCTGTGCTGCACTGGGTGAAGGAATAGGACCAGAACTGaatttttgttttagaaatcTCTGTTTAACATTATGTTTAGTAACAGTTCTTcacagattattaaaaaaaatctcctttttttgtattttggaaGATTATGCTTTGCTGGTCAGATTGGAAAATGGAGTCTGTACAGTACTGTGAAGAAGCAAAAGGACTGTCAAAAGTGTGTTCTTATGCTGAATTATGCTTTATCTTGGTTCTTCAGTATCTTCGAGCATGCTGACTCTAAGTCCCACAGtattatgtacagtacagtaagaCCTTTGTGATGTTGATTAATTAAAGATGCTCTCAGCTGCGA
>XM_039802419.1
CTAATGTTGTTTTGCCGTTTTAGGGCATGCAAGATGAGAACACTTTGGTAtttcatgtactgtatttcaATAAGTCGTTTGTGTTTACCTGCACTTTCTCCCACCTAATGGGAGCAAAATCATGTAAATGGACATTGAATTCTTTGTTTTTCccaaaagacattttcatcTAAAACCAAGATGTGATTCATGAGTGTAAACTATGACGTGAGGACTGATAATAGCTGTTTGGATTAAGAGGGTGCGCAGTAACTTGTGTCTTTGCCATTCTGAGCTCCTGAGAGTGTGTGCTGGAGGAAAGTCTGGAAAGTGACTCTAAACGTCTCCTTTAATGCATCGTAATAAATGGCTAGTGACACAACCCCCATTTTCCCTCATGAGTCTAGAGAGAGAGGTTTTCCATATATGTCGGCTTCCACATATTTTCCACTTCAGCATCAGTGTTGACATTATAGAGCAGCCTTCGTCCAGCCTGCTGGCCTGGTTCTCATGCTGCCTCCTGTGCCTGGAAACAAACCCATGCAGTCGCCCAACAACAAGACTTGATTCCTGTCACTTCTTGGCTCACCTCTGTTGAAAACACTTGTTGTTGACTTGCCCAGCCCAGCGTTACTCGTATCGGCCCAGGCTTCCTTTCATCTCTCCCCAGGGCCAGGCCTTCTCGTGCAGGCTTGGCCCTGAGTGGGCTCCCCCTGGCCTGACATCATGGGGATCCAGGGCATGGAGCTGTTTGCCATCGGTGTGGTCATCATCCTTTTCATGGCAGTTCTCAAGCAGTTTGGCATCTTGGAGCCCATGTCCTCATTTGAAGaGAGCAGCGACAGTGACTTGGAGCTGTCAACGGTGCGTCACCAACCAGAGGGTCTGGATCAGCTGCAGGCTCAGACCAAGTTCACCAGGAAGGAACTTCAGTCCCTCTATCGAGGCTTCAAGAACGAGTGTCCCAGTGGGCTGGTTGATGAGGAGACATTCAAGACCATCTATTCTCAGTTCTTTCCCCAAGGAGATGCAACCACCTACGCTCACTTCCTGTTCAACGCATTTGACATCGACAGGAACGGTTCAATCCGCTTTGAGGACTTTGTCATCGGCCTGTCGGTGTTGCTCAGAGGTTCGGTCACTGAGAAGCTCAACTGGGCCTTCAACCTCTATGACATTAATAAGGACGGCTACATCACCAAAGAGGAGATGCTGGCGATTATGAAGTCAATCTACGACATGATGGGGAGGTACACCTACCCCTGTGTGAGAGATGAAGCGCCCTCTGAACACGTGGACAAGTTCTTCCAGAAAATGGATAAAAACCGAGATGGTGTAGTGACCATTGAAGAGTTCATTGAGACCTGTCAGAAGgaCGAGAACATCATGAACTCCATGCAGCTGTTTGAGAATGTGATATAAGAAAGCCCACCTGcacaactcacacacaaacatagtaaccccaaccctaacccagGAACTAGACGTTTTTTATTTCTCGCCACACTCCTTTAGCTGTATCTTGCAAACTGCTTCTGGATTAAAAAGGACTGCTACagacagaagaagagaagagtttCCTGGATAAAAATTCCCCCGTCTGTccggtgtgttttttgtgtcctAATTGAAGAAACACGAAAAGCTCCTTGTGTTTCTATCGTCGGACAAAAATAATCAACAACAACCAACAAGGAATGGAGAAGCTTACAATATTCCTCTGACCTGAGCACACAAGGATACAAGCTTTAACACTACACCtcacctctctcacacacactgtttctctttcccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagctgttgttTCCTCAAGAGTTGTTAGAGCACTGGATGAGGTGAACTAAGAGAATAAATAttgcaaaagaaaaagagaaatgaaCTTAAGCATGTTTGTCATCAAATATGTGATGTGGAATAAGCTTGCACTACACTTTTATGACTGTATTATATGCGCCTGAAGTAAAGGCACTGTAGATACCTGCACCTGATACACCACtggtgtgtatgtatatatgtatagttAATAATTATATATCCCACCTTGTATTGGCCTCATCTGTGCTGCACTGGGTGAAGGAATAGGACCAGAACTGaatttttgttttagaaatcTCTGTTTAACATTATGTTTAGTAACAGTTCTTcacagattattaaaaaaaatctcctttttttgtattttggaaGATTATGCTTTGCTGGTCAGATTGGAAAATGGAGTCTGTACAGTACTGTGAAGAAGCAAAAGGACTGTCAAAAGTGTGTTCTTATGCTGAATTATGCTTTATCTTGGTTCTTCAGTATCTTCGAGCATGCTGACTCTAAGTCCCACAGtattatgtacagtacagtaagaCCTTTGTGATGTTGATTAATTAAAGATGCTCTCAGCTGCGA

Function

symbol description
kcnip3 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in cytosol. Predicted to be part of voltage-gated potassium channel complex.

NR:

description
PREDICTED: calsenilin-like isoform X2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23855 KCNIP; Kv channel-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802416.1 False 1920 mRNA 0.45 9 26197240 26245476
XM_039802417.1 False 1917 mRNA 0.45 8 26197240 26245476
XM_039802418.1 True 2444 mRNA 0.44 8 26229778 26245476
XM_039802419.1 False 2441 mRNA 0.44 7 26229778 26245476

Neighbor

gene id symbol gene type direction distance location
pcna pcna coding upstream 12880 26181011 ~ 26184360 (+)
zgc:152830 LOC103357146 coding upstream 17124 26174224 ~ 26180116 (+)
gpat2 LOC101483931,LOC102796756,LOC102305881,LOC102195621 coding upstream 35632 25980908 ~ 26161608 (+)
adra2b LOC104943288,LOC102796455,LOC102308546,LOC103357149,LOC102212827,LOC100694621,LOC101484392,LOC105931407 coding upstream 232753 25958799 ~ 25964487 (+)
dusp2 dusp2,LOC106948589,LOC103145864,LOC102224120,LOC103470063 coding upstream 244661 25949454 ~ 25952579 (+)
slc23a2 slc23a2,LOC107394182 coding downstream 3651 26249127 ~ 26291466 (+)
LOC120561147 rassf2 coding downstream 50275 26295751 ~ 26307628 (+)
sprn2 NA coding downstream 79273 26324749 ~ 26328928 (+)
plpp5 plpp5,LOC102777825 coding downstream 138933 26384409 ~ 26394401 (+)
cdc45 cdc45 coding downstream 150322 26395798 ~ 26402661 (+)
G64677 NA non-coding upstream 268082 25928924 ~ 25929158 (+)
G64663 NA non-coding upstream 274852 25922163 ~ 25922388 (+)
G64658 NA non-coding upstream 279147 25917765 ~ 25918093 (+)
G64657 NA non-coding upstream 279764 25917187 ~ 25917476 (+)
G64643 NA non-coding upstream 280348 25915944 ~ 25916892 (+)
G64764 NA non-coding downstream 58374 26303850 ~ 26321956 (+)
G64834 NA non-coding downstream 266989 26512465 ~ 26514759 (+)
G64836 polb non-coding downstream 286276 26531752 ~ 26533420 (+)
G64838 polb non-coding downstream 289536 26535012 ~ 26537695 (+)
G64839 NA non-coding downstream 292792 26538268 ~ 26538541 (+)
LOC120560359 NA other upstream 268644 25926087 ~ 25928596 (+)
LOC120560031 LOC104941040,LOC103357154,LOC102795853 other upstream 281663 25914279 ~ 25915577 (+)
LOC120561182 LOC104948667,LOC104930137,LOC103397628,LOC103366370,LOC107092578,LOC102226292,LOC106956829,LOC106919698,LOC103470079,LOC103141747 other upstream 500664 25684964 ~ 25696576 (+)
cdc14b cdc14b,LOC102776968,LOC103141798,LOC106948523 other upstream 1359792 24823718 ~ 24837448 (+)
prxl2c aaed1 other upstream 1374174 24821314 ~ 24823066 (+)
nsd3 whsc1l1 other downstream 113644 26359120 ~ 26383843 (+)
G64814 cldn5,LOC103357131 other downstream 167393 26412869 ~ 26414597 (+)
c6h22orf39 clg12h22orf39 other downstream 248808 26494284 ~ 26496987 (+)
cltcl1 LOC100691387,LOC103359525 other downstream 368761 26614237 ~ 26644167 (+)
si:dkey-178e17.1 slc25a1,LOC100697273,LOC101470788,LOC103359526,LOC102784907,LOC107394264,LOC103145904 other downstream 399185 26644661 ~ 26661895 (+)

Expression


Co-expression Network